Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Reverse (-)

11044772 .. 11053875

Gene Structure 9104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17100.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3165 bp

ATGAAGCGAGAGTTGGCTTCTGTTTCCGAGGAGGGCCAGTCTCAACTCGCCGAGCCTGCGCTTCGTGTTTACGAGAGGCTCAGCTCCTCCAAGAGGTTCAAAGGCGCTATTGTGAATGGCTTGATTGTGTATACGCGGGCGAGGAGGCCTGGGATCAATGGCCGGGGCGGCGTATCGGAGGAGGCGGAAGCTGATGGGAGGAAGAGATTCGATGATGAGGCGAGAAATGATGGAGGCGTTTCGGCTCGGGGTTTCGAGAGTGATCAGCTGACTGAAGTTGAAGTTAGGGATGAGGGGAGCGGCGGGGTGGAGATACCTTGGAGTAGGAAAGGGAAGGGGAGTGAGCTGCGGTGGCCGTTTGCGGAGGATCATGATATCGGTGGGGAGTTGGTTGAGGTTGTAGTTAGAGAAGAGAGTAATTTTAGTTTGGAAATGAGTAGGAAGGGGTATGCCGCCTTAAGCGGCAGTGCTGGTAGTGGTCCTCGTAAGAGGAGGAGGAAGGGTTCACAAGCCAGGTCATCCAGGAGGAAGCATTTTACGCGATCCACATCCAGAGCTAGTGTCAAGCCTCCGGTGGAAAATGGATCAGAGGCTGCGCAGGGATCAGAGGCTGCGCAAGTATCAGAGGCTGCGAAAGGATCAGAGGCTGTGCCAGTATCAGAGGTTGTGCAAGAATTGGAGGTTTTGGCGGTATCAGAGGCTCTTCCAGTATCAGAGGAGGCTGTGCCAGGGTCAGAGGTTGTGCCAGAATTGGAGGTTTTGGCGGTATCAAAGGCTCTGCCGGTATCAGAGGAGGCTGTGCCAGCTGAAGTGATTTCTGATGTAGAAGAGGAGAAATTAGTTGACATGAGTACACTGTTGTCAAATAGTAAGCTAGAATTGAAGATGTCGAAAAAGGTTGTGCTAGACAGGAAGCCTACTACTGTCAAGGAGCTGTTTGATACAGGCTTGGTTGATGGGATAACAGTGATTTACATGGGTAGCAAGAAGGCATTTGGTCTGCGGGGCACAATAAGAGATGGAGGGATTTTGTGTTATTGCGTATCTTGCAATGGCTGCAGAGTCATTCCACCATCTCAATTCGAGATTCATGCTTGTAAAACGTACAGACGAGCAGCACAATATATTTGCCTTGCGAATGGAAGGAGTCTTCTTGATCTTTTGAAGGTGTGCAGAAATGCTTCTCTGCATGCATTGGAGGCAACAATTCAGAAGTTCATCAATTCTTCACCAATAGACAAATATTTCACTTGTCAAAAATGCAGTGTGTCTTTTCCTCCATATTGTGCCGTGGAAGATGGATCTCTTTGCTATTCGTGCATGGAGTCAGACAATCCTGGATGGAGCCCATCGAAGGAAGCTAGTAAAAGTCTCAGAGCTTTGTTGCCTGCTTCCCCAAAAACTGCTACATCAAAGTCTGCAAAAAATGGAATCTCAAAGACTCCGAAAAGTACCATATTAAGACCGCCGAGGAGTGCGATCTCAAAATCCCCCAAAAGTGGACTTTTAAAGTCCCCAAAGAGGGCAATTTCAAAGCTGACACATAGTGCAATTGCCAAGTCTCCCAAGAGTGCTTCACTTTGGAAGACAACAAAGTTATCAACACCTGTTTCGATTTCAAGTCCATCAAAAAGTGCTTCTCCAATGCGCTCAGAATATAAGAGTGGATGGAAGATAACATCAAAGTCGTCAAAATCTGTTCTGATCTCAAGGTCCCCAAGTGCTGCTTCATTGTATTTTTCGTCACAAAAGAAAAGTCAGTGGAGGATTACAACTAAAGATCAGCGCCTGCATAAGTTGGTATTTGAGGAAGGTGGATTGCCTGATGGAAGCGAAGTGGCTTATTATGCCCGTGGACAGAAATTGCTAGTTGGTTATAAAAAGGGTTTTGGAATATTTTGCCGTTGCTGCAACACTGAGGTCAGCCCATCGCAGTTTGAAGCTCATGCGGGTTGGGCTACACGTAGAAAACCCTATGCATACATATATACCTCCAATGGCGTGTCTCTCCATGAATTAGCCATATCTTTGTCGAGGGGGCGCAAGTATTCAGCTAAAGATAATGATGACTTGTGCATCATTTGTGCAGATGGTGGGAATCTTGTTCTTTGTGATGGATGCCCTCGGGCCTTCCACAGAGATTGTGCATCTCTATCAGGTGTCCCTCGTGGTGACTGGTACTGTAAGTTTTGCCAGAATATGTTTCAAAGGGAGAAGTTTGTGGAACATAATGAAAATGCTGTCGCTGCCGGAAGGGTTGAAGGAATTGATCCTATTGAACAGATAACACAAAGATGCATCCGTATTGTCAAAGACATCGAAGCTGAACTTACTGGATGTGTATTATGTAGGGGGTATGATTTTAGCAAATCAGGATTTGGTCCACGTACTATTATTCTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAACTTGAAGGAATTGCCAAAGGGGAAATGGTTTTGTTGCACAGATTGCAGTAAAATTCAATCTATTTTGCAAAAGTGTCTATCAAGGGGAGCTGAAGAGCTCCCAGAATCTCATTTGGATATTATGAAGAAAAAGCATGAGGGAAACGGTTTGGAGACGGTCAATGGTTTTGATGTCAGATGGAGACTTATCAGTGGAAAAATGGCTTCTCAGGAATCTCGGTTATTGCTTTCAAAGGCTGTTGCTATCTTCCATGATTGCTTTGATCCAATAATTGATGCCGAATCAGGGCGTGATCTCATTCCTGCCATGGTTTATGGAAGGAATGTTAGGAGTCAAGAATATGGGGGGATGTACTGTGCAATTCTAATGGTCAACTCAACTGTCGTATCAGCTGCAATTATTCGTGTTTTTGGTCAAGAAGTTGCTGAGCTTCCTTTAGTCGCAACAAGTAGTGGTAATCATGGCAAGGGCTACTTCCAATCATTGTTTTCCTGCATTGAGAAGCTGCTAGCCTTCTTGAGTGTGAAGAACCTTGTGCTGCCAGCTGCCCCAGAAGCAGAATCCATATGGACGGAAAAATTTGGTTTTACAAAGATAGATCCAGACCAGCTTATCAACTACAGACGGACTTGCTACCAAATGATTACCTTCAAAGGAACATCAATGCTGCATAAAAAGCTCTCTGCTTCCAGTTCATGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1055

Amino Acids

115.58

Weight (kDa)

9.06

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	336 - 391	6.5e-11	Tify domain binding domain
TDBD	PF16135	628 - 673	9.7e-14	Tify domain binding domain
PHD-1st_NSD	PF23011	688 - 732	5.2e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	692 - 731	9.6e-07	PHD-finger
IDM1_C	PF23209	907 - 1046	4.7e-54	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1878
Acc16I	TGCGCA	2 cut(s)	597, 615
AccB7I	CCANNNNNTGG	1 cut(s)	3156
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	2 cut(s)	136, 541
AcoI	YGGCCR	2 cut(s)	160, 353
AcsI	RAATTY	2 cut(s)	2511, 3038
AcuI	CTGAAG	3 cut(s)	294, 828, 2571
AdeI	CACNNNGTG	1 cut(s)	1547
AfaI	GTAC	6 cut(s)	853, 1106, 1453, 2180, 2389, 2813
AfiI	CCNNNNNNNGG	7 cut(s)	93, 1354, 1499, 1521, 1522, 2745, 3156
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	1961
AjnI	CCWGG	5 cut(s)	148, 512, 521, 727, 1336
AjuI	GAANNNNNNNTTGG	5 cut(s)	28, 1711, 1743, 2412, 2444
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
Alw21I	GWGCWC	1 cut(s)	2559
Alw26I	GTCTC	6 cut(s)	45, 1376, 1566, 2010, 2606, 2635
AlwNI	CAGNNNCTG	5 cut(s)	593, 611, 629, 647, 1789
Ama87I	CYCGRG	2 cut(s)	246, 2124
AoxI	GGCC	5 cut(s)	34, 146, 160, 353, 2127
ApoI	RAATTY	2 cut(s)	2511, 3038
ArsI	GACNNNNNNTTYG	2 cut(s)	1741, 1773
Asp700I	GAANNNNTTC	2 cut(s)	206, 1180
AspLEI	GCGC	7 cut(s)	61, 107, 598, 616, 1650, 1788, 2043
AspS9I	GGNCC	5 cut(s)	34, 479, 1713, 2127, 2381
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	1221, 2183
AsuNHI	GCTAGC	1 cut(s)	2968
AvaI	CYCGRG	2 cut(s)	246, 2124
AvaII	GGWCC	3 cut(s)	479, 1713, 2381
BaeGI	GKGCMC	1 cut(s)	1010
BaeI	ACNNNNGTAYC	2 cut(s)	2829, 2862
BanII	GRGCYC	2 cut(s)	1349, 2559
BauI	CACGAG	1 cut(s)	2166
BbsI	GAAGAC	2 cut(s)	1142, 1592
Bbv12I	GWGCWC	1 cut(s)	2559
BceAI	ACGGC	3 cut(s)	340, 1274, 1887
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BciT130I	CCWGG	5 cut(s)	150, 514, 523, 729, 1338
BclI	TGATCA	2 cut(s)	262, 2404
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	6 cut(s)	45, 1376, 1566, 2010, 2606, 2635
BfaI	CTAG	6 cut(s)	558, 875, 905, 1362, 1868, 2969
BfmI	CTRYAG	2 cut(s)	1057, 3079
BfoI	RGCGCY	2 cut(s)	108, 1789
BfrI	CTTAAG	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	168
BlpI	GCTNAGC	2 cut(s)	80, 2886
Bme1390I	CCNGG	6 cut(s)	150, 164, 514, 523, 729, 1338
Bme18I	GGWCC	3 cut(s)	479, 1713, 2381
BmeT110I	CYCGRG	2 cut(s)	246, 2124
BmgT120I	GGNCC	5 cut(s)	34, 479, 1713, 2127, 2381
BmiI	GGNNCC	2 cut(s)	1346, 1715
BmrFI	CCNGG	6 cut(s)	150, 164, 514, 523, 729, 1338
BmsI	GCATC	6 cut(s)	2085, 2108, 2156, 2285, 2307, 2725
BmtI	GCTAGC	1 cut(s)	2972
BpiI	GAAGAC	2 cut(s)	1142, 1592
Bpu1102I	GCTNAGC	2 cut(s)	80, 2886
BpuEI	CTTGAG	2 cut(s)	1693, 2998
BpuMI	CCSGG	1 cut(s)	164
BsaAI	YACGTR	2 cut(s)	1964, 2387
BsaBI	GATNNNNATC	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 487, 517
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 1354, 1499, 1521, 1522, 2745, 3156
Bse118I	RCCGGY	1 cut(s)	781
Bse1I	ACTGG	6 cut(s)	37, 653, 707, 2180, 2338, 3150
Bse3DI	GCAATG	1 cut(s)	1057
Bse8I	GATNNNNATC	1 cut(s)	547
BseBI	CCWGG	5 cut(s)	150, 514, 523, 729, 1338
BseGI	GGATG	9 cut(s)	295, 518, 548, 1346, 1673, 2123, 2298, 2342, 2814
BseJI	GATNNNNATC	1 cut(s)	547
BseLI	CCNNNNNNNGG	7 cut(s)	93, 1354, 1499, 1521, 1522, 2745, 3156
BseMI	GCAATG	1 cut(s)	1057
BseMII	CTCAG	6 cut(s)	94, 1387, 1665, 1908, 2681, 2877
BseNI	ACTGG	6 cut(s)	37, 653, 707, 2180, 2338, 3150
BseSI	GKGCMC	1 cut(s)	1010
BsgI	GTGCAG	2 cut(s)	1192, 2106
Bsh1236I	CGCG	2 cut(s)	136, 541
BshFI	GGCC	5 cut(s)	36, 148, 162, 355, 2129
BsiHKAI	GWGCWC	1 cut(s)	2559
BsiHKCI	CYCGRG	2 cut(s)	246, 2124
BsiSI	CCGG	4 cut(s)	163, 572, 782, 2250
BslFI	GGGAC	3 cut(s)	1498, 1699, 2147
BslI	CCNNNNNNNGG	7 cut(s)	93, 1354, 1499, 1521, 1522, 2745, 3156
BsmAI	GTCTC	6 cut(s)	45, 1376, 1566, 2010, 2606, 2635
BsmBI	CGTCTC	1 cut(s)	2606
BsmFI	GGGAC	3 cut(s)	1498, 1699, 2147
BsnI	GGCC	5 cut(s)	36, 148, 162, 355, 2129
BsoBI	CYCGRG	2 cut(s)	246, 2124
Bsp1286I	GDGCHC	3 cut(s)	1010, 1349, 2559
Bsp1720I	GCTNAGC	2 cut(s)	80, 2886
Bsp19I	CCATGG	1 cut(s)	2766
BspANI	GGCC	5 cut(s)	36, 148, 162, 355, 2129
BspCNI	CTCAG	6 cut(s)	93, 1386, 1664, 1909, 2680, 2878
BspFNI	CGCG	2 cut(s)	136, 541
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	1346, 1715
BspMAI	CTGCAG	1 cut(s)	1061
BspOI	GCTAGC	1 cut(s)	2972
BspQI	GCTCTTC	2 cut(s)	708, 2547
BspTI	CTTAAG	1 cut(s)	457
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	1057
BsrFI	RCCGGY	1 cut(s)	781
BsrI	ACTGG	6 cut(s)	37, 653, 707, 2180, 2338, 3150
BssAI	RCCGGY	1 cut(s)	781
BssNAI	GTATAC	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	2166
BssT1I	CCWWGG	2 cut(s)	317, 2766
Bst1107I	GTATAC	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	2166
Bst2UI	CCWGG	5 cut(s)	150, 514, 523, 729, 1338
Bst4CI	ACNGT	8 cut(s)	858, 925, 967, 2183, 2606, 2617, 2816, 2842
Bst6I	CTCTTC	5 cut(s)	197, 405, 708, 822, 2547
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	2 cut(s)	1056, 2502
BstBAI	YACGTR	2 cut(s)	1964, 2387
BstC8I	GCNNGC	8 cut(s)	57, 138, 804, 1191, 1389, 1790, 2970, 3003
BstDEI	CTNAG	6 cut(s)	80, 1373, 1651, 1917, 2667, 2886
BstDSI	CCRYGG	3 cut(s)	1290, 1852, 2766
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	9 cut(s)	295, 518, 548, 1346, 1673, 2123, 2298, 2342, 2814
BstFNI	CGCG	2 cut(s)	136, 541
BstH2I	RGCGCY	2 cut(s)	108, 1789
BstHHI	GCGC	7 cut(s)	61, 107, 598, 616, 1650, 1788, 2043
BstMAI	GTCTC	6 cut(s)	45, 1376, 1566, 2010, 2606, 2635
BstNI	CCWGG	5 cut(s)	150, 514, 523, 729, 1338
BstNSI	RCATGY	1 cut(s)	1193
BstSCI	CCNGG	6 cut(s)	148, 162, 512, 521, 727, 1336
BstSFI	CTRYAG	2 cut(s)	1057, 3079
BstSLI	GKGCMC	1 cut(s)	1010
BstUI	CGCG	2 cut(s)	136, 541
BstV2I	GAAGAC	2 cut(s)	1142, 1592
BstX2I	RGATCY	2 cut(s)	1301, 3058
BstYI	RGATCY	2 cut(s)	1301, 3058
BstZ17I	GTATAC	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	36, 148, 162, 355, 2129
BtgI	CCRYGG	3 cut(s)	1290, 1852, 2766
BtgZI	GCGATG	1 cut(s)	1914
BtsCI	GGATG	9 cut(s)	295, 518, 548, 1346, 1673, 2123, 2298, 2342, 2814
BtsI	GCAGTG	2 cut(s)	472, 1270
BtsIMutI	CAGTG	8 cut(s)	472, 854, 972, 1270, 1766, 1914, 2414, 2656
Cac8I	GCNNGC	8 cut(s)	57, 138, 804, 1191, 1389, 1790, 2970, 3003
CaiI	CAGNNNCTG	5 cut(s)	593, 611, 629, 647, 1789
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	7 cut(s)	61, 107, 598, 616, 1650, 1788, 2043
Cfr10I	RCCGGY	1 cut(s)	781
Cfr13I	GGNCC	5 cut(s)	34, 479, 1713, 2127, 2381
Csp6I	GTAC	6 cut(s)	852, 1105, 1452, 2179, 2388, 2812
CspCI	CAANNNNNGTGG	2 cut(s)	2123, 2158
CviQI	GTAC	6 cut(s)	852, 1105, 1452, 2179, 2388, 2812
DdeI	CTNAG	6 cut(s)	80, 1373, 1651, 1917, 2667, 2886
DraI	TTTAAA	1 cut(s)	1509
DraIII	CACNNNGTG	1 cut(s)	1547
EaeI	YGGCCR	2 cut(s)	160, 353
Eam1104I	CTCTTC	5 cut(s)	197, 405, 708, 822, 2547
EarI	CTCTTC	5 cut(s)	197, 405, 708, 822, 2547
EciI	GGCGGA	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	2557
Eco130I	CCWWGG	2 cut(s)	317, 2766
Eco147I	AGGCCT	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	1349, 2559
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	479, 1713, 2381
Eco53kI	GAGCTC	1 cut(s)	2557
Eco57I	CTGAAG	3 cut(s)	294, 828, 2571
Eco88I	CYCGRG	2 cut(s)	246, 2124
EcoICRI	GAGCTC	1 cut(s)	2557
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	1713
EcoRII	CCWGG	5 cut(s)	148, 512, 521, 727, 1336
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	317, 2766
EcoT22I	ATGCAT	3 cut(s)	1195, 1981, 2300
EcoT38I	GRGCYC	2 cut(s)	1349, 2559
ErhI	CCWWGG	2 cut(s)	317, 2766
Esp3I	CGTCTC	1 cut(s)	2606
FalI	AAGNNNNNCTT	6 cut(s)	1711, 1743, 2313, 2345, 2918, 2950
FaqI	GGGAC	3 cut(s)	1498, 1699, 2147
FauI	CCCGC	4 cut(s)	129, 296, 996, 1942
FauNDI	CATATG	1 cut(s)	3026
FbaI	TGATCA	2 cut(s)	262, 2404
FblI	GTMKAC	1 cut(s)	131
FokI	GGATG	9 cut(s)	302, 505, 535, 1353, 1680, 2130, 2285, 2349, 2821
FriOI	GRGCYC	2 cut(s)	1349, 2559
FspBI	CTAG	6 cut(s)	558, 875, 905, 1362, 1868, 2969
FspI	TGCGCA	2 cut(s)	597, 615
GlaI	GCGC	7 cut(s)	60, 106, 597, 615, 1649, 1787, 2042
HaeII	RGCGCY	2 cut(s)	108, 1789
HaeIII	GGCC	5 cut(s)	36, 148, 162, 355, 2129
HapII	CCGG	4 cut(s)	163, 572, 782, 2250
HhaI	GCGC	7 cut(s)	61, 107, 598, 616, 1650, 1788, 2043
Hin6I	GCGC	7 cut(s)	59, 105, 596, 614, 1648, 1786, 2041
HinP1I	GCGC	7 cut(s)	59, 105, 596, 614, 1648, 1786, 2041
HincII	GTYRAC	2 cut(s)	844, 2833
HindII	GTYRAC	2 cut(s)	844, 2833
HpaII	CCGG	4 cut(s)	163, 572, 782, 2250
HphI	GGTGA	2 cut(s)	1221, 2183
Hpy166II	GTNNAC	9 cut(s)	70, 132, 506, 844, 854, 1502, 1856, 2384, 2833
Hpy8I	GTNNAC	9 cut(s)	70, 132, 506, 844, 854, 1502, 1856, 2384, 2833
HpyCH4III	ACNGT	8 cut(s)	858, 925, 967, 2183, 2606, 2617, 2816, 2842
HpyCH4IV	ACGT	3 cut(s)	1103, 1963, 2386
HpyF3I	CTNAG	6 cut(s)	80, 1373, 1651, 1917, 2667, 2886
HpySE526I	ACGT	3 cut(s)	1103, 1963, 2386
HspAI	GCGC	7 cut(s)	59, 105, 596, 614, 1648, 1786, 2041
Ksp22I	TGATCA	2 cut(s)	262, 2404
LguI	GCTCTTC	2 cut(s)	708, 2547
LmnI	GCTCC	6 cut(s)	89, 297, 931, 1344, 2546, 2562
LweI	GCATC	6 cut(s)	2085, 2108, 2156, 2285, 2307, 2725
MaeI	CTAG	6 cut(s)	558, 875, 905, 1362, 1868, 2969
MaeII	ACGT	3 cut(s)	1103, 1963, 2386
MaeIII	GTNAC	2 cut(s)	1743, 2171
MbiI	CCGCTC	1 cut(s)	300
MfeI	CAATTG	1 cut(s)	1551
MflI	RGATCY	2 cut(s)	1301, 3058
MhlI	GDGCHC	3 cut(s)	1010, 1349, 2559
MlyI	GAGTC	5 cut(s)	1071, 1156, 1334, 1435, 2800
Mph1103I	ATGCAT	3 cut(s)	1195, 1981, 2300
MroXI	GAANNNNTTC	2 cut(s)	206, 1180
MseI	TTAA	3 cut(s)	458, 1460, 1508
MslI	CAYNNNNRTG	1 cut(s)	2293
MspA1I	CMGCKG	4 cut(s)	268, 806, 2852, 3005
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	4 cut(s)	163, 572, 782, 2250
MspR9I	CCNGG	6 cut(s)	150, 164, 514, 523, 729, 1338
MunI	CAATTG	1 cut(s)	1551
MvaI	CCWGG	5 cut(s)	150, 514, 523, 729, 1338
MvnI	CGCG	2 cut(s)	136, 541
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	2766
NdeI	CATATG	1 cut(s)	3026
NheI	GCTAGC	1 cut(s)	2968
NlaIV	GGNNCC	2 cut(s)	1346, 1715
NmeAIII	GCCGAG	2 cut(s)	76, 1494
NmuCI	GTSAC	2 cut(s)	1743, 2171
NsbI	TGCGCA	2 cut(s)	597, 615
NsiI	ATGCAT	3 cut(s)	1195, 1981, 2300
NspI	RCATGY	1 cut(s)	1193
PaeI	GCATGC	1 cut(s)	1193
PagI	TCATGA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	148
PciSI	GCTCTTC	2 cut(s)	708, 2547
PdmI	GAANNNNTTC	2 cut(s)	206, 1180
PfeI	GAWTC	8 cut(s)	207, 1087, 1431, 2098, 2564, 2672, 2741, 3020
PflMI	CCANNNNNTGG	1 cut(s)	3156
PfoI	TCCNGGA	2 cut(s)	521, 1336
PleI	GAGTC	5 cut(s)	1070, 1155, 1333, 1435, 2799
PpsI	GAGTC	5 cut(s)	1070, 1155, 1333, 1435, 2799
Ppu21I	YACGTR	2 cut(s)	1964, 2387
PpuMI	RGGWCCY	1 cut(s)	1713
PsiI	TTATAA	1 cut(s)	1878
Psp124BI	GAGCTC	1 cut(s)	2559
Psp5II	RGGWCCY	1 cut(s)	1713
Psp6I	CCWGG	5 cut(s)	148, 512, 521, 727, 1336
PspGI	CCWGG	5 cut(s)	148, 512, 521, 727, 1336
PspN4I	GGNNCC	2 cut(s)	1346, 1715
PspPI	GGNCC	5 cut(s)	34, 479, 1713, 2127, 2381
PspPPI	RGGWCCY	1 cut(s)	1713
PstI	CTGCAG	1 cut(s)	1061
PstNI	CAGNNNCTG	5 cut(s)	593, 611, 629, 647, 1789
PsuI	RGATCY	2 cut(s)	1301, 3058
PvuII	CAGCTG	4 cut(s)	268, 806, 2852, 3005
RsaI	GTAC	6 cut(s)	853, 1106, 1453, 2180, 2389, 2813
RsaNI	GTAC	6 cut(s)	852, 1105, 1452, 2179, 2388, 2812
RseI	CAYNNNNRTG	1 cut(s)	2293
SacI	GAGCTC	1 cut(s)	2559
SapI	GCTCTTC	2 cut(s)	708, 2547
SaqAI	TTAA	3 cut(s)	458, 1460, 1508
Sau96I	GGNCC	5 cut(s)	34, 479, 1713, 2127, 2381
SchI	GAGTC	5 cut(s)	1071, 1156, 1334, 1435, 2800
ScrFI	CCNGG	6 cut(s)	150, 164, 514, 523, 729, 1338
SduI	GDGCHC	3 cut(s)	1010, 1349, 2559
SfaNI	GCATC	6 cut(s)	2085, 2108, 2156, 2285, 2307, 2725
SfcI	CTRYAG	2 cut(s)	1057, 3079
SinI	GGWCC	3 cut(s)	479, 1713, 2381
SmiMI	CAYNNNNRTG	1 cut(s)	2293
SmlI	CTYRAG	3 cut(s)	457, 1708, 2977
SmoI	CTYRAG	3 cut(s)	457, 1708, 2977
SphI	GCATGC	1 cut(s)	1193
SseBI	AGGCCT	1 cut(s)	148
SspI	AATATT	2 cut(s)	1244, 1896
SspMI	CTAG	6 cut(s)	558, 875, 905, 1362, 1868, 2969
SstI	GAGCTC	1 cut(s)	2559
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	6 cut(s)	148, 162, 512, 521, 727, 1336
StyI	CCWWGG	2 cut(s)	317, 2766
TaaI	ACNGT	8 cut(s)	858, 925, 967, 2183, 2606, 2617, 2816, 2842
TaiI	ACGT	3 cut(s)	1106, 1966, 2389
TaqI	TCGA	8 cut(s)	210, 255, 890, 1083, 1352, 1613, 2033, 2319
TatI	WGTACW	2 cut(s)	851, 2811
TauI	GCSGC	4 cut(s)	171, 303, 455, 465
TfiI	GAWTC	8 cut(s)	207, 1087, 1431, 2098, 2564, 2672, 2741, 3020
Tru1I	TTAA	3 cut(s)	458, 1460, 1508
Tru9I	TTAA	3 cut(s)	458, 1460, 1508
TscAI	CASTG	8 cut(s)	472, 861, 972, 1270, 1766, 1921, 2414, 2656
TseFI	GTSAC	2 cut(s)	1743, 2171
Tsp45I	GTSAC	2 cut(s)	1743, 2171
TspDTI	ATGAA	8 cut(s)	17, 1079, 1207, 1719, 2028, 2247, 2597, 3144
TspGWI	ACGGA	3 cut(s)	2291, 3047, 3100
TspRI	CASTG	8 cut(s)	472, 861, 972, 1270, 1766, 1921, 2414, 2656
Van91I	CCANNNNNTGG	1 cut(s)	3156
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	3 cut(s)	479, 1713, 2381
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	2 cut(s)	2511, 3038
XceI	RCATGY	1 cut(s)	1193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2481
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	206, 1180
XspI	CTAG	6 cut(s)	558, 875, 905, 1362, 1868, 2969
Zsp2I	ATGCAT	3 cut(s)	1195, 1981, 2300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.