Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

33022869 .. 33030815

Gene Structure 7947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3078 bp

ATGAAGCGAGATTTGGCTTATGTATTGGAGGGCCAGTCTCAACTCGCCGATTCTGTGGTTGGGACTCGCGCCGAGGAGGCGAGCCCTACGCTTCGAGTTTATGAGAGACTGAACTCCAAGAGATTCAAAGGCGCTATTGTTGATGGTTTGATTGTGTATACGCGGGCCAGGAGGCCCGGGATCAATGGCCGGAGTGGTTTGTCGGAGGATGCGAAAGCCGCCGCCGTCGCCGCCGGGAGTAAAAGATTGGATGAGGTCAGAAATGATGGAAGCGTTTCTGCTCCGGCGTTTGAGAGTGATCAGCTGACTGAAGTTGTAGTTAGGGATGAAGGGAGTACCGGTTTGGTGATACCTAGGAGTAGGGGTGGGAAGGGGAGTGAGATATGGGTGCCTTTTGTTGGGGATCACGATATCGATGGGGAGTTGGTTGAAGTTGTAGTTAGAGAAGAGGACAATTGTAGTTTCGAAATGAGTAGAAAGCGCTCTGCTGCCTTGAATGGCAGAGCTGCTAATAGTAGAAAGAGGGGAAAGGATTCACAACCAAGGTCGTCGAGGAGGAAGCGCTTCACGCGATCCACATTGAGACCTAGTGTCGAGCCTCCGGTGGAAAATGGATCAGTGGCTGTGCTAGGATCAGAGGCTTTGCCTGGATCAGAGGCTGTGACAGGGTTAGAGATTGTGCCAGTTGAAGCGATTTCTGATGTAGAGGAGGAGAAACTAGTTGAAGTCAGTACACTGCTGTCAAATAGTAAGCTAGAATTGAAAATGTCGAAAAAGGTTGTGCTTGACAGGAAGCCTACTACTGTCAAGGAGCTGTTTGATACAGGCTTGGTTGATGGGGTAACAGTGATTTACATGGGTAGCAAGAAGGCGTTTGGTCTGCGGGGCACAATAAGAGACGGAGGGATTTTGTGTTCATGTATATCTTGCAATGGCTGCAGAGTCATTCCACCATCTCAATTCGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTACATTTGCCTTGAGAATGGAAGGAGCCTGCTTGATCTTCTGAAGGTGTGCAGGAATGCTTCGCTGCATACATTGGAGACAACAATTCAGAAGTTCATCAATTCTTCACCAATAGACAAATATTTCACTTGTAAAAACTGTAGCGTCTCCTTTCCTCCGTATTGTGCTCTGGAAGATGGATCGCTTTGCTATTCTTGCATGGAGTCAAATAAACCTGACAGCCCATCTCAGGAAACTAGTAAAAATCTCAGAGCTTTGCTGCCTGCTTCGTTGTCAATGTCCCCGAAAAATGCAAAGTCCCCAAAAACTGCAACACCGAAGTCTGCAAGAAATGGAATTTTAAAGACTCCTAAAAGTACAATCTTAAGGCCCCCAAGAGGTGCTATCTCAAAGTCCCCCAAAAGTGCAATCTTAAATTCCACAAAGAGGGCAATCTCAAAGCTCCCAAAAACTGCAATTTCAAAGTCTCCCAAGAGTGCTTCTCTTTGGAAGACAACTAAGTTATCAACACCAGTTTCGATCTCAAGTCCATCAAAAAGTGCTTCTCCAATGCGCTCAGAATATAAGGGTGGATGGAAGATAACATCAAAGTCATCAAAATCAGTCCTGATCTCAAGGTCCCCAAGTGCTGCTTCAATGTATTTTTCTTCACAAAAGAAAAGTCAGTGGAGGATTACAACCAAAGATCAGCGCCTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGATGGAAGCGAAGTAGCATATTATGCCCGTGGACAGAAATTGCTAGTTGGTTATAAAAAGGGTTTTGGAATATTTTGCCGTTGCTGCAACACCGAGGTGAGCCCCTCGCAGTTTGAGGCTCATGCAGGTTGGGCTACACGCAGGAAACCCTATGCATACATTTATACCTCCAATGGCGTGTCTCTCCACGAATTGGCCATATCTTTGTCAAGGGGTCGCAAGTATTCAGCCAAAGATAATGATGACTTGTGCATCATTTGTGCAGATGGCGGGAATCTTGTTCTTTGTGATGGATGCCCACGGGCCTTCCACAGAGATTGTGCATCTCTATCAGGTGTCCCTCGTGGTGACTGGTACTGTAAGTTTTGCCAGAATATGTTTCAAAGGGAGAAGTTTGTGGAACATAATGAAAATGCTGTTGCTGCTGGAAGGGTTGAAGGAATTGATCCTATAGAACAGATAACTCAAAGATGCATCCGTATTGTCAAAGACATTGAAGCTGAACTTACTGGATGTGTATTATGTAGGGGGTATGATTTTAGCAAATCGGGATTTGGTCCACGTACTATTATACTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAACTTGAAGGAATTGCCAAAGGGGAAATGGTTTTGTTGCACAGAATGCAATAAAATTCAATCTATTTTGCAAAAGTGTTTATCAAGGGGAGCTGAGGAGCTCCCAGATTCTCATTTGGATATTATGAAGAGAAAGCACGAGGAAAATGGTTTGGAGACTGTCAATGGTTTTGATGTCAGATGGAGACTTATTAGTGGCAAAATGGCTTCTCAAGAATCTCGGTTATTGCTTTCAAAGGCTGTTGCTATCTTCCATGATTGCTTTGATCCAATAATCGATGCAGAATCTGGGCGTGATCTCATTCCTGCCATGGTTTATGGAAGGAATGTGAGGAGCCAAGAATATGGGGGGATGTACTGTGCAATTCTTATGGTCAACTCAACTGTTGTATCAGCTGCTATTATTCGTGTTTTTGGTCAAGAAGTTGCTGAGCTTCCTTTAGTTGCTACAAGTAGTGGTAACCATGGCAAGGGCTACTTCCAATCATTATTTTCCTGCATTGAGAAGCTGCTAGCTTTCTTGAGTGTGAAGAACCTTGTGCTGCCGGCTGCCCCAGAAGCAGAATCCATATGGACAGAAAAATTTGGTTTTACAAAGATAGATCCAGACCAGCTTATTAACTACAGACGGACTTGCTACCAAATGATAACCTTCAAAGGAACATCAATGTTGCATAAAAAGGTTCCTGAATGTCGACTTGTAAATACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1026

Amino Acids

112.85

Weight (kDa)

9.24

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	296 - 351	3.7e-12	Tify domain binding domain
TDBD	PF16135	597 - 642	9.4e-14	Tify domain binding domain
PHD-1st_NSD	PF23011	657 - 701	5e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	661 - 700	9.3e-07	PHD-finger
IDM1_C	PF23209	876 - 1015	4.5e-54	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1785
Acc36I	ACCTGC	1 cut(s)	1847
AccB1I	GGYRCC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	1924
AccI	GTMKAC	2 cut(s)	158, 3058
AccII	CGCG	3 cut(s)	69, 163, 571
AciI	CCGC	6 cut(s)	163, 219, 222, 231, 883, 2001
AcoI	YGGCCR	2 cut(s)	187, 1926
AcsI	RAATTY	4 cut(s)	1338, 1417, 2418, 2945
AcuI	CTGAAG	2 cut(s)	330, 1064
AfaI	GTAC	7 cut(s)	337, 733, 1004, 1360, 2087, 2296, 2720
AfeI	AGCGCT	2 cut(s)	482, 563
AfiI	CCNNNNNNNGG	6 cut(s)	398, 1231, 1379, 1428, 1924, 2833
AflII	CTTAAG	1 cut(s)	1366
AgeI	ACCGGT	1 cut(s)	338
AhdI	GACNNNNNGTC	1 cut(s)	590
AhlI	ACTAGT	2 cut(s)	718, 1238
AjnI	CCWGG	2 cut(s)	167, 646
AjuI	GAANNNNNNNTTGG	5 cut(s)	28, 1618, 1650, 2319, 2351
AleI	CACNNNNGTG	1 cut(s)	1826
AloI	GAACNNNNNNTCC	2 cut(s)	898, 930
Alw21I	GWGCWC	2 cut(s)	1171, 2466
AlwNI	CAGNNNCTG	4 cut(s)	623, 659, 1696, 2651
Ama87I	CYCGRG	1 cut(s)	176
Aor51HI	AGCGCT	2 cut(s)	482, 563
AoxI	GGCC	7 cut(s)	31, 165, 173, 187, 1370, 1926, 2034
ApoI	RAATTY	4 cut(s)	1338, 1417, 2418, 2945
ArsI	GACNNNNNNTTYG	2 cut(s)	1648, 1680
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	3 cut(s)	274, 532, 563
AspA2I	CCTAGG	1 cut(s)	353
AspLEI	GCGC	6 cut(s)	71, 134, 483, 564, 1557, 1695
AspS9I	GGNCC	7 cut(s)	31, 165, 174, 1371, 1620, 2034, 2288
AsuC2I	CCSGG	3 cut(s)	177, 178, 235
AsuHPI	GGTGA	4 cut(s)	358, 1101, 1840, 2090
AsuII	TTCGAA	1 cut(s)	465
AsuNHI	GCTAGC	1 cut(s)	2875
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	1620, 2288
AvrII	CCTAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	890
BaeI	ACNNNNGTAYC	2 cut(s)	2736, 2769
BalI	TGGCCA	1 cut(s)	1928
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	3 cut(s)	86, 1835, 2466
BauI	CACGAG	2 cut(s)	2073, 2501
BbsI	GAAGAC	1 cut(s)	1499
Bbv12I	GWGCWC	2 cut(s)	1171, 2466
BbvCI	CCTCAGC	1 cut(s)	2457
BceAI	ACGGC	2 cut(s)	209, 1794
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BciT130I	CCWGG	2 cut(s)	169, 648
BclI	TGATCA	2 cut(s)	298, 2311
BcnI	CCSGG	3 cut(s)	177, 178, 235
BcuI	ACTAGT	2 cut(s)	718, 1238
BfaI	CTAG	8 cut(s)	354, 588, 629, 719, 755, 1239, 1775, 2876
BfmI	CTRYAG	4 cut(s)	937, 1141, 2181, 2986
BfoI	RGCGCY	4 cut(s)	135, 484, 565, 1696
BfrI	CTTAAG	1 cut(s)	1366
BfuAI	ACCTGC	1 cut(s)	1847
BglI	GCCNNNNNGGC	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	353
BlpI	GCTNAGC	1 cut(s)	2793
Bme1390I	CCNGG	5 cut(s)	169, 177, 178, 235, 648
Bme18I	GGWCC	2 cut(s)	1620, 2288
BmeRI	GACNNNNNGTC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	7 cut(s)	31, 165, 174, 1371, 1620, 2034, 2288
BmiI	GGNNCC	6 cut(s)	390, 1028, 1373, 1622, 2699, 3048
BmrFI	CCNGG	5 cut(s)	169, 177, 178, 235, 648
BmsI	GCATC	7 cut(s)	199, 1992, 2015, 2063, 2192, 2214, 2632
BmtI	GCTAGC	1 cut(s)	2879
BpiI	GAAGAC	1 cut(s)	1499
BplI	GAGNNNNNCTC	2 cut(s)	1468, 1500
Bpu10I	CCTNAGC	1 cut(s)	2457
Bpu1102I	GCTNAGC	1 cut(s)	2793
Bpu14I	TTCGAA	1 cut(s)	465
BpuEI	CTTGAG	5 cut(s)	1034, 1510, 1600, 2559, 2905
BpuMI	CCSGG	3 cut(s)	177, 178, 235
Bsa29I	ATCGAT	2 cut(s)	414, 2640
BsaAI	YACGTR	1 cut(s)	2294
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	9 cut(s)	72, 176, 353, 542, 1759, 1824, 2030, 2673, 2827
BsaWI	WCCGGW	2 cut(s)	338, 601
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 325, 349, 355, 379
Bsc4I	CCNNNNNNNGG	6 cut(s)	398, 1231, 1379, 1428, 1924, 2833
Bse118I	RCCGGY	2 cut(s)	338, 2908
Bse1I	ACTGG	5 cut(s)	34, 683, 1514, 2087, 2245
Bse3DI	GCAATG	1 cut(s)	937
BseBI	CCWGG	2 cut(s)	169, 648
BseCI	ATCGAT	2 cut(s)	414, 2640
BseDI	CCNNGG	9 cut(s)	72, 176, 353, 542, 1759, 1824, 2030, 2673, 2827
BseGI	GGATG	8 cut(s)	214, 256, 331, 1580, 2030, 2205, 2249, 2721
BseLI	CCNNNNNNNGG	6 cut(s)	398, 1231, 1379, 1428, 1924, 2833
BseMI	GCAATG	1 cut(s)	937
BseMII	CTCAG	5 cut(s)	1244, 1264, 1572, 2448, 2784
BseNI	ACTGG	5 cut(s)	34, 683, 1514, 2087, 2245
BseRI	GAGGAG	6 cut(s)	89, 568, 722, 725, 2474, 2710
BseSI	GKGCMC	1 cut(s)	890
BsgI	GTGCAG	2 cut(s)	1072, 2013
Bsh1236I	CGCG	3 cut(s)	69, 163, 571
BshFI	GGCC	7 cut(s)	33, 167, 175, 189, 1372, 1928, 2036
BshNI	GGYRCC	1 cut(s)	388
BshTI	ACCGGT	1 cut(s)	338
BshVI	ATCGAT	2 cut(s)	414, 2640
BsiHKAI	GWGCWC	2 cut(s)	1171, 2466
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	7 cut(s)	177, 190, 234, 284, 339, 602, 2909
BslFI	GGGAC	6 cut(s)	76, 1267, 1285, 1381, 1606, 2054
BslI	CCNNNNNNNGG	6 cut(s)	398, 1231, 1379, 1428, 1924, 2833
BsmBI	CGTCTC	2 cut(s)	891, 1153
BsmFI	GGGAC	6 cut(s)	76, 1267, 1285, 1381, 1606, 2054
BsmI	GAATGC	2 cut(s)	1063, 2414
BsnI	GGCC	7 cut(s)	33, 167, 175, 189, 1372, 1928, 2036
Bso31I	GGTCTC	1 cut(s)	577
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	465
Bsp1286I	GDGCHC	5 cut(s)	86, 890, 1171, 1835, 2466
Bsp1720I	GCTNAGC	1 cut(s)	2793
Bsp19I	CCATGG	2 cut(s)	2673, 2827
BspACI	CCGC	6 cut(s)	163, 219, 222, 231, 883, 2001
BspANI	GGCC	7 cut(s)	33, 167, 175, 189, 1372, 1928, 2036
BspCNI	CTCAG	5 cut(s)	1243, 1263, 1571, 2449, 2785
BspDI	ATCGAT	2 cut(s)	414, 2640
BspFNI	CGCG	3 cut(s)	69, 163, 571
BspLI	GGNNCC	6 cut(s)	390, 1028, 1373, 1622, 2699, 3048
BspMAI	CTGCAG	1 cut(s)	941
BspMI	ACCTGC	1 cut(s)	1847
BspOI	GCTAGC	1 cut(s)	2879
BspT104I	TTCGAA	1 cut(s)	465
BspT107I	GGYRCC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	1366
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	937
BsrFI	RCCGGY	2 cut(s)	338, 2908
BsrI	ACTGG	5 cut(s)	34, 683, 1514, 2087, 2245
BssAI	RCCGGY	2 cut(s)	338, 2908
BssECI	CCNNGG	9 cut(s)	72, 176, 353, 542, 1759, 1824, 2030, 2673, 2827
BssNAI	GTATAC	1 cut(s)	159
BssSI	CACGAG	2 cut(s)	2073, 2501
BssT1I	CCWWGG	4 cut(s)	353, 542, 2673, 2827
Bst1107I	GTATAC	1 cut(s)	159
Bst2BI	CACGAG	2 cut(s)	2073, 2501
Bst2UI	CCWGG	2 cut(s)	169, 648
Bst4CI	ACNGT	8 cut(s)	805, 847, 1002, 1142, 2090, 2524, 2723, 2749
Bst6I	CTCTTC	2 cut(s)	441, 2486
BstAFI	CTTAAG	1 cut(s)	1366
BstAPI	GCANNNNNTGC	3 cut(s)	936, 1754, 2409
BstBAI	YACGTR	1 cut(s)	2294
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	7 cut(s)	82, 165, 1031, 1266, 1697, 2877, 2910
BstDEI	CTNAG	6 cut(s)	1230, 1250, 1500, 1558, 2457, 2793
BstDSI	CCRYGG	4 cut(s)	1759, 2030, 2673, 2827
BstEII	GGTNACC	1 cut(s)	2822
BstF5I	GGATG	8 cut(s)	214, 256, 331, 1580, 2030, 2205, 2249, 2721
BstFNI	CGCG	3 cut(s)	69, 163, 571
BstH2I	RGCGCY	4 cut(s)	135, 484, 565, 1696
BstHHI	GCGC	6 cut(s)	71, 134, 483, 564, 1557, 1695
BstNI	CCWGG	2 cut(s)	169, 648
BstPI	GGTNACC	1 cut(s)	2822
BstSCI	CCNGG	5 cut(s)	167, 175, 176, 233, 646
BstSFI	CTRYAG	4 cut(s)	937, 1141, 2181, 2986
BstSLI	GKGCMC	1 cut(s)	890
BstUI	CGCG	3 cut(s)	69, 163, 571
BstV2I	GAAGAC	1 cut(s)	1499
BstX2I	RGATCY	1 cut(s)	2965
BstXI	CCANNNNNNTGG	1 cut(s)	2708
BstYI	RGATCY	1 cut(s)	2965
BstZ17I	GTATAC	1 cut(s)	159
Bsu15I	ATCGAT	2 cut(s)	414, 2640
BsuRI	GGCC	7 cut(s)	33, 167, 175, 189, 1372, 1928, 2036
BsuTUI	ATCGAT	2 cut(s)	414, 2640
BtgI	CCRYGG	4 cut(s)	1759, 2030, 2673, 2827
BtsCI	GGATG	8 cut(s)	214, 256, 331, 1580, 2030, 2205, 2249, 2721
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	5 cut(s)	624, 734, 852, 1673, 2321
BveI	ACCTGC	1 cut(s)	1847
Cac8I	GCNNGC	7 cut(s)	82, 165, 1031, 1266, 1697, 2877, 2910
CaiI	CAGNNNCTG	4 cut(s)	623, 659, 1696, 2651
CfoI	GCGC	6 cut(s)	71, 134, 483, 564, 1557, 1695
Cfr10I	RCCGGY	2 cut(s)	338, 2908
Cfr13I	GGNCC	7 cut(s)	31, 165, 174, 1371, 1620, 2034, 2288
Cfr9I	CCCGGG	1 cut(s)	176
ClaI	ATCGAT	2 cut(s)	414, 2640
CseI	GACGC	1 cut(s)	1135
Csp6I	GTAC	7 cut(s)	336, 732, 1003, 1359, 2086, 2295, 2719
CspAI	ACCGGT	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	2030, 2065
CviQI	GTAC	7 cut(s)	336, 732, 1003, 1359, 2086, 2295, 2719
DdeI	CTNAG	6 cut(s)	1230, 1250, 1500, 1558, 2457, 2793
DraI	TTTAAA	1 cut(s)	1344
DriI	GACNNNNNGTC	1 cut(s)	590
EaeI	YGGCCR	2 cut(s)	187, 1926
Eam1104I	CTCTTC	2 cut(s)	441, 2486
Eam1105I	GACNNNNNGTC	1 cut(s)	590
EarI	CTCTTC	2 cut(s)	441, 2486
Ecl136II	GAGCTC	1 cut(s)	2464
Eco130I	CCWWGG	4 cut(s)	353, 542, 2673, 2827
Eco24I	GRGCYC	3 cut(s)	86, 1835, 2466
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	2 cut(s)	1620, 2288
Eco47III	AGCGCT	2 cut(s)	482, 563
Eco53kI	GAGCTC	1 cut(s)	2464
Eco57I	CTGAAG	2 cut(s)	330, 1064
Eco88I	CYCGRG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	2822
EcoICRI	GAGCTC	1 cut(s)	2464
EcoO109I	RGGNCCY	2 cut(s)	1371, 1620
EcoO65I	GGTNACC	1 cut(s)	2822
EcoRII	CCWGG	2 cut(s)	167, 646
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	4 cut(s)	353, 542, 2673, 2827
EcoT22I	ATGCAT	2 cut(s)	1888, 2207
EcoT38I	GRGCYC	3 cut(s)	86, 1835, 2466
ErhI	CCWWGG	4 cut(s)	353, 542, 2673, 2827
Esp3I	CGTCTC	2 cut(s)	891, 1153
FalI	AAGNNNNNCTT	6 cut(s)	1618, 1650, 2220, 2252, 2825, 2857
FaqI	GGGAC	6 cut(s)	76, 1267, 1285, 1381, 1606, 2054
FauI	CCCGC	3 cut(s)	156, 876, 1994
FauNDI	CATATG	1 cut(s)	2933
FbaI	TGATCA	2 cut(s)	298, 2311
FblI	GTMKAC	2 cut(s)	158, 3058
FokI	GGATG	8 cut(s)	221, 263, 338, 1587, 2037, 2192, 2256, 2728
FriOI	GRGCYC	3 cut(s)	86, 1835, 2466
FspBI	CTAG	8 cut(s)	354, 588, 629, 719, 755, 1239, 1775, 2876
GlaI	GCGC	6 cut(s)	70, 133, 482, 563, 1556, 1694
HaeII	RGCGCY	4 cut(s)	135, 484, 565, 1696
HaeIII	GGCC	7 cut(s)	33, 167, 175, 189, 1372, 1928, 2036
HapII	CCGG	7 cut(s)	177, 190, 234, 284, 339, 602, 2909
HgaI	GACGC	1 cut(s)	1135
HhaI	GCGC	6 cut(s)	71, 134, 483, 564, 1557, 1695
Hin6I	GCGC	6 cut(s)	69, 132, 481, 562, 1555, 1693
HinP1I	GCGC	6 cut(s)	69, 132, 481, 562, 1555, 1693
HincII	GTYRAC	2 cut(s)	2740, 3059
HindII	GTYRAC	2 cut(s)	2740, 3059
HpaII	CCGG	7 cut(s)	177, 190, 234, 284, 339, 602, 2909
HphI	GGTGA	4 cut(s)	358, 1101, 1840, 2090
Hpy166II	GTNNAC	6 cut(s)	159, 734, 1763, 2291, 2740, 3059
Hpy8I	GTNNAC	6 cut(s)	159, 734, 1763, 2291, 2740, 3059
Hpy99I	CGWCG	2 cut(s)	230, 553
HpyCH4III	ACNGT	8 cut(s)	805, 847, 1002, 1142, 2090, 2524, 2723, 2749
HpyCH4IV	ACGT	1 cut(s)	2293
HpyF3I	CTNAG	6 cut(s)	1230, 1250, 1500, 1558, 2457, 2793
HpySE526I	ACGT	1 cut(s)	2293
HspAI	GCGC	6 cut(s)	69, 132, 481, 562, 1555, 1693
KroI	GCCGGC	1 cut(s)	2908
KroNI	GCCGGC	1 cut(s)	2910
Ksp22I	TGATCA	2 cut(s)	298, 2311
LmnI	GCTCC	8 cut(s)	286, 811, 1026, 1449, 2453, 2461, 2469, 2697
LweI	GCATC	7 cut(s)	199, 1992, 2015, 2063, 2192, 2214, 2632
MaeI	CTAG	8 cut(s)	354, 588, 629, 719, 755, 1239, 1775, 2876
MaeII	ACGT	1 cut(s)	2293
MaeIII	GTNAC	4 cut(s)	661, 841, 2078, 2822
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	1 cut(s)	2965
MhlI	GDGCHC	5 cut(s)	86, 890, 1171, 1835, 2466
MlsI	TGGCCA	1 cut(s)	1928
MluNI	TGGCCA	1 cut(s)	1928
MlyI	GAGTC	4 cut(s)	58, 951, 1214, 1342
MmeI	TCCRAC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	1928
Mph1103I	ATGCAT	2 cut(s)	1888, 2207
MroNI	GCCGGC	1 cut(s)	2908
MroXI	GAANNNNTTC	3 cut(s)	274, 532, 563
MscI	TGGCCA	1 cut(s)	1928
MseI	TTAA	4 cut(s)	1343, 1367, 1415, 2982
MslI	CAYNNNNRTG	1 cut(s)	1826
Msp20I	TGGCCA	1 cut(s)	1928
MspA1I	CMGCKG	2 cut(s)	304, 2759
MspCI	CTTAAG	1 cut(s)	1366
MspI	CCGG	7 cut(s)	177, 190, 234, 284, 339, 602, 2909
MspR9I	CCNGG	5 cut(s)	169, 177, 178, 235, 648
MunI	CAATTG	1 cut(s)	454
Mva1269I	GAATGC	2 cut(s)	1063, 2414
MvaI	CCWGG	2 cut(s)	169, 648
MvnI	CGCG	3 cut(s)	69, 163, 571
NaeI	GCCGGC	1 cut(s)	2910
NciI	CCSGG	3 cut(s)	177, 178, 235
NcoI	CCATGG	2 cut(s)	2673, 2827
NdeI	CATATG	1 cut(s)	2933
NgoMIV	GCCGGC	1 cut(s)	2908
NheI	GCTAGC	1 cut(s)	2875
NlaIV	GGNNCC	6 cut(s)	390, 1028, 1373, 1622, 2699, 3048
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	661, 2078
NsiI	ATGCAT	2 cut(s)	1888, 2207
NspV	TTCGAA	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	1826
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	2 cut(s)	1063, 2414
PdiI	GCCGGC	1 cut(s)	2910
PdmI	GAANNNNTTC	3 cut(s)	274, 532, 563
PfeI	GAWTC	9 cut(s)	50, 123, 533, 967, 2005, 2471, 2579, 2648, 2927
PflMI	CCANNNNNTGG	1 cut(s)	1924
PinAI	ACCGGT	1 cut(s)	338
PleI	GAGTC	4 cut(s)	58, 950, 1213, 1342
PpsI	GAGTC	4 cut(s)	58, 950, 1213, 1342
Ppu21I	YACGTR	1 cut(s)	2294
PpuMI	RGGWCCY	1 cut(s)	1620
PsiI	TTATAA	1 cut(s)	1785
Psp124BI	GAGCTC	1 cut(s)	2466
Psp5II	RGGWCCY	1 cut(s)	1620
Psp6I	CCWGG	2 cut(s)	167, 646
PspEI	GGTNACC	1 cut(s)	2822
PspGI	CCWGG	2 cut(s)	167, 646
PspN4I	GGNNCC	6 cut(s)	390, 1028, 1373, 1622, 2699, 3048
PspPI	GGNCC	7 cut(s)	31, 165, 174, 1371, 1620, 2034, 2288
PspPPI	RGGWCCY	1 cut(s)	1620
PstI	CTGCAG	1 cut(s)	941
PstNI	CAGNNNCTG	4 cut(s)	623, 659, 1696, 2651
PsuI	RGATCY	1 cut(s)	2965
PvuII	CAGCTG	2 cut(s)	304, 2759
RsaI	GTAC	7 cut(s)	337, 733, 1004, 1360, 2087, 2296, 2720
RsaNI	GTAC	7 cut(s)	336, 732, 1003, 1359, 2086, 2295, 2719
RseI	CAYNNNNRTG	1 cut(s)	1826
SacI	GAGCTC	1 cut(s)	2466
SalI	GTCGAC	1 cut(s)	3057
SaqAI	TTAA	4 cut(s)	1343, 1367, 1415, 2982
Sau96I	GGNCC	7 cut(s)	31, 165, 174, 1371, 1620, 2034, 2288
SchI	GAGTC	4 cut(s)	58, 951, 1214, 1342
ScrFI	CCNGG	5 cut(s)	169, 177, 178, 235, 648
SduI	GDGCHC	5 cut(s)	86, 890, 1171, 1835, 2466
SfaNI	GCATC	7 cut(s)	199, 1992, 2015, 2063, 2192, 2214, 2632
SfcI	CTRYAG	4 cut(s)	937, 1141, 2181, 2986
SfuI	TTCGAA	1 cut(s)	465
SinI	GGWCC	2 cut(s)	1620, 2288
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	1826
SmlI	CTYRAG	6 cut(s)	1013, 1366, 1525, 1615, 2574, 2884
SmoI	CTYRAG	6 cut(s)	1013, 1366, 1525, 1615, 2574, 2884
SpeI	ACTAGT	2 cut(s)	718, 1238
SsiI	CCGC	6 cut(s)	163, 219, 222, 231, 883, 2001
SspI	AATATT	2 cut(s)	1124, 1803
SspMI	CTAG	8 cut(s)	354, 588, 629, 719, 755, 1239, 1775, 2876
SstI	GAGCTC	1 cut(s)	2466
StyD4I	CCNGG	5 cut(s)	167, 175, 176, 233, 646
StyI	CCWWGG	4 cut(s)	353, 542, 2673, 2827
TaaI	ACNGT	8 cut(s)	805, 847, 1002, 1142, 2090, 2524, 2723, 2749
TaiI	ACGT	1 cut(s)	2296
TatI	WGTACW	4 cut(s)	731, 1002, 1358, 2718
TauI	GCSGC	3 cut(s)	221, 224, 233
TfiI	GAWTC	9 cut(s)	50, 123, 533, 967, 2005, 2471, 2579, 2648, 2927
Tru1I	TTAA	4 cut(s)	1343, 1367, 1415, 2982
Tru9I	TTAA	4 cut(s)	1343, 1367, 1415, 2982
TscAI	CASTG	5 cut(s)	624, 741, 852, 1673, 2321
TseFI	GTSAC	2 cut(s)	661, 2078
Tsp45I	GTSAC	2 cut(s)	661, 2078
TspDTI	ATGAA	7 cut(s)	17, 342, 906, 959, 1087, 2154, 2504
TspGWI	ACGGA	4 cut(s)	915, 1149, 2198, 3007
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	5 cut(s)	624, 741, 852, 1673, 2321
Van91I	CCANNNNNTGG	1 cut(s)	1924
Vha464I	CTTAAG	1 cut(s)	1366
VpaK11BI	GGWCC	2 cut(s)	1620, 2288
XapI	RAATTY	4 cut(s)	1338, 1417, 2418, 2945
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2388
XmaI	CCCGGG	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	158, 3058
XmnI	GAANNNNTTC	3 cut(s)	274, 532, 563
XspI	CTAG	8 cut(s)	354, 588, 629, 719, 755, 1239, 1775, 2876
Zsp2I	ATGCAT	2 cut(s)	1888, 2207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.