Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

16383704 .. 16391498

Gene Structure 7795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1104000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2928 bp

ATGAAGCGGGAATTGGCTTGTGTTTTGAAGGGTCAGACTCGGCTCGCTGATTCAGTGGCTGGGACTCAGGACGAGTCCCAGACGAGTCCGTTTGTTGTATATGAGAGACTTAATCGTAAGAGGTTTAAGGGTGCGGTTGTGAATGGTGTGATTGTCTATACCCGAGAGAGAAGGGCTCGGATCAAGGGCGGTAATGGGGTTTCGGAGGGGGCGGAGATAAATGGGCGGAATGGCTCGGAAAAGCCGAGAATTGAGGAAACCCCATCTCATCAATTAGTTGAATGTTTAGTTAAAGATGAGTCAAATTGCAATTTGGAGATACCCAGTTGTAGACATGAGGGTGGCAGTGAGCGGTCAGGGTCTTCGTGTGAGGAGCACGATATGGAAGCAGACTTAGTTGAAATTGTAGTTAAAGATGAGCCCAATTATCATGAGGGGGAAACAGATATGAAAGGCGGGGCATTGAGGCGGTTTACTCGATCAGCATTGAGACCCAAGTTTGAGCCTACTGTGGAAAATGCATCAGGGTCTGTGCCTGTTGAAGTGATTTCAAATATAGAGGGGGAAGATACAGTTGGAGTCAGCATGCTGACATCGCCACTGAAGAATAAGCTAGAATTGAAAATGTCAAAGAAGATTGTGGTGGACAGGAAACCTACAACAGTCAAAGAGCTCTTTGACACTGGCTTGGTTGATGGGGTGCAAGTGATTTACATGGGCAGCAAGAAGGCATTCGGTCTGCGGGGCACAATAAGGGATGGTGGAATTTTGTGTTCATGCATACTGTGCAACGGCGGCAGAGTTATTCCACCGTCCCAATTTGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTATATTTGTTTTGAGAATGGAAAGAGTCTGCTTGATCTCTTGAAGTCGTGCAGAAATGCTTCTTTGCATACATTGGAAACAACAATTCAGAAGTTCATCAGTTCTTCACCCATGGAGAAGTATTTTACTTGTAAAAAGTGTAGTGTGTCTTTTCCTCCATACTGTGCTCTGGGTGATGGATCTCTTTGCTATTCTTGCATGGAGCCGAAGCAGCCTGAGTGCAGCCTAACTCATGAGAGAGGCAATAGTCTCAGTTCTTTGATACCTGTTTCAATCTCAAAGTCCTCCAAGAGTGCAATCTCAAAGTCCCGGAAAAGTGCAATCTCAAAGTCCCTGAAAAGTACAATCTCAAAGTCCTTGAAAAGTGCAATCTCAAAACCCTTGAGAAGTGCAATCTCAACTCCCCAGAAAAATGCAGTGTCAAAATCCCCCAAGAGTGCTCCACTCTATTTGTCACTGAAAAAGAAGACCCAGTTGAATACAAGAAAGTCATCAACGCCAGTTTTGATCTCAGATCCGTCAAAAAGTTCTTCTCCAGAGAGTTCAGATTATAAGAGTGGATGGAAGATAACACCAAAGTTGATCTTCAAAATCAATTCTGATCTCAAGGCCCCCCAGTACTTCTTCAGTGTATTTTTCTTCGCAGAAGAAAAGTCAGTGGAGGATTACAACAAAGTAGATCAGCGGCTGCATAAGTTGGTTTTCGAGGAAGGTGGATTGCCTGACGGAACAGAAGTAGCATATTATGCACGCGGACAGAAATTGCTAGTTGGTTACAAGAAAGGATTTGGAATATTTTGTTGTTGCTGCAACAGTGAGGTCAGCCCGTCACAGTTTGAGGCCCATGCAGGTTGGGCCACACGCAGGAAACCCTATGCATACATTTACACATCTAACGGAGTGTCTCTCCACGAGTTGGCTATATCTTTGTCAAGAGGTCGGAAATATGCAGCCAAGGATAATGATGACTTGTGCATCATTTGTGCCGATGGTGGGAATCTTGTGCTTTGTGATGGATGCCCTAGGGCCTTCCACAGAGACTGTGCTTCTCTACCAAGTGTTCCTCGTGGTGACTGGTACTGTAAGTTTTGTCAAAATATGTTTCAAAGAGAAAAGTTTGTGGAACATAATGAAAATGCTGTTGCTGCTGGAAGGATTGATGGAATTGATCCTATAGAACAGATAACCCAAAGATGCATTCGTATTGTCAAAGACATAGAAGCTGAACTAACTGGATGCGTTTTATGTAGAGGTTATGATTTTAGCAAATCAGGATTTGGTCCACGAACTATTATACTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAATTTAAAGGAATTGCCAAAAGGGAAGTGGTTTTGTTGCGCAGACTGCAGTAGAATTCATTCTATTTTGCAAAGGTTGCTGACTAGAGGAGCTGAGAAGCTTCCTGACTCTCATTTGGATGTTATAAAGAAGAAGATGGAGGCAAATGGTTTGGAGACTGTCAGTGGGTTTGATGTGAGATGGAGACTTATTAGTGGCAAAATTGCTTCTCAGGAATGTCGTTTTTTACTTTCAAAGGCTGTTGCTATCTTCCACGATTGCTTTGATCCTATAGTTGATGCAGAATCTGGGCGAGACCTTATTCCCGCCATGGTTTATGGAAGGAATGTTAGGAGCCAAGAATTTGGGAATATGTACTGTGCAATACTGATGGTCAACTCAACTGTGGTATCAGCTGGAATTATACGTGTTTTTGGTCATGAAGTTGCTGAACTTCCTTTGGTCGCCACTAGTAATGGTAACCATGGCAAGGGCTACTTCCAACTATTGTTCTCCTGCATTGAAAAGCTGCTAGCTTTCTTGAATGTGAAAAGTATTGTGCTGCCGGCTGCGGAAGAAGCAGAATCCATATGGACCGATAAATTTGGTTTTACAAAAATGAAGCCGGAGCAGCTCACCACCTACCGAAGAACCTGCTACCAAATGGTGACATTCAAAGGAACGTCAATGCTACATAAAAGGGTTCCCGAGTGCCGGGTTGTAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

976

Amino Acids

108.23

Weight (kDa)

8.96

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	249 - 304	8.3e-12	Tify domain binding domain
TDBD	PF16135	548 - 593	5.9e-13	Tify domain binding domain
PHD-1st_NSD	PF23011	608 - 652	1.7e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	612 - 651	2.5e-07	PHD-finger
IDM1_C	PF23209	827 - 965	4.6e-53	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1413, 2342
Acc16I	TGCGCA	1 cut(s)	2257
Acc36I	ACCTGC	2 cut(s)	1700, 2858
AccB7I	CCANNNNNTGG	1 cut(s)	1777
AccBSI	CCGCTC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	331
AccII	CGCG	1 cut(s)	1614
AclWI	GGATC	5 cut(s)	188, 1048, 1370, 2024, 2477
AcsI	RAATTY	5 cut(s)	765, 2218, 2271, 2558, 2798
AcuI	CTGAAG	2 cut(s)	623, 1471
AfaI	GTAC	4 cut(s)	1204, 1481, 1940, 2573
AfiI	CCNNNNNNNGG	5 cut(s)	1725, 1777, 1854, 2686, 2910
AflIII	ACRYGT	1 cut(s)	2623
AhlI	ACTAGT	1 cut(s)	2666
AjuI	GAANNNNNNNTTGG	9 cut(s)	28, 558, 590, 810, 842, 2043, 2075, 2172, 2204
AluBI	AGCT	9 cut(s)	613, 673, 2084, 2309, 2317, 2612, 2725, 2732, 2830
AluI	AGCT	9 cut(s)	613, 673, 2084, 2309, 2317, 2612, 2725, 2732, 2830
Alw21I	GWGCWC	4 cut(s)	378, 675, 1030, 1303
Alw26I	GTCTC	8 cut(s)	100, 484, 1115, 1770, 1893, 2366, 2395, 2505
AlwI	GGATC	5 cut(s)	188, 1048, 1370, 2024, 2477
AlwNI	CAGNNNCTG	5 cut(s)	59, 530, 1549, 1902, 2504
Ama87I	CYCGRG	2 cut(s)	162, 2903
AoxI	GGCC	4 cut(s)	1470, 1701, 1716, 1887
ApoI	RAATTY	5 cut(s)	765, 2218, 2271, 2558, 2798
Asp700I	GAANNNNTTC	3 cut(s)	731, 919, 2275
AspA2I	CCTAGG	1 cut(s)	1883
AspLEI	GCGC	1 cut(s)	2258
AspS9I	GGNCC	6 cut(s)	1471, 1702, 1716, 1887, 2141, 2790
AsuC2I	CCSGG	2 cut(s)	1171, 2912
AsuHPI	GGTGA	5 cut(s)	960, 1046, 1943, 2824, 2875
AsuNHI	GCTAGC	1 cut(s)	2728
AvaI	CYCGRG	2 cut(s)	162, 2903
AvaII	GGWCC	2 cut(s)	2141, 2790
AvrII	CCTAGG	1 cut(s)	1883
BaeGI	GKGCMC	1 cut(s)	749
BaeI	ACNNNNGTAYC	2 cut(s)	2589, 2622
BanII	GRGCYC	3 cut(s)	178, 423, 675
BauI	CACGAG	2 cut(s)	1772, 1926
BbsI	GAAGAC	2 cut(s)	354, 1334
Bbv12I	GWGCWC	4 cut(s)	378, 675, 1030, 1303
BceAI	ACGGC	1 cut(s)	808
BcgI	CGANNNNNNTGC	2 cut(s)	2832, 2866
BclI	TGATCA	1 cut(s)	2164
BcnI	CCSGG	2 cut(s)	1171, 2912
BcoDI	GTCTC	8 cut(s)	100, 484, 1115, 1770, 1893, 2366, 2395, 2505
BcuI	ACTAGT	1 cut(s)	2666
BfaI	CTAG	6 cut(s)	614, 1628, 1884, 2301, 2667, 2729
BfmI	CTRYAG	3 cut(s)	2034, 2263, 2487
BfuAI	ACCTGC	2 cut(s)	1700, 2858
BlnI	CCTAGG	1 cut(s)	1883
BmcAI	AGTACT	1 cut(s)	1481
Bme1390I	CCNGG	2 cut(s)	1171, 2912
Bme18I	GGWCC	2 cut(s)	2141, 2790
BmeT110I	CYCGRG	2 cut(s)	162, 2903
BmgT120I	GGNCC	6 cut(s)	1471, 1702, 1716, 1887, 2141, 2790
BmiI	GGNNCC	4 cut(s)	1065, 1473, 2552, 2901
BmrFI	CCNGG	2 cut(s)	1171, 2912
BmrI	ACTGGG	3 cut(s)	318, 1327, 1471
BmsI	GCATC	6 cut(s)	530, 1845, 1868, 2045, 2087, 2485
BmtI	GCTAGC	1 cut(s)	2732
BmuI	ACTGGG	3 cut(s)	318, 1327, 1471
BpiI	GAAGAC	2 cut(s)	354, 1334
BplI	GAGNNNNNCTC	4 cut(s)	160, 192, 1752, 1784
BpmI	CTGGAG	1 cut(s)	1380
BpuEI	CTTGAG	2 cut(s)	1264, 1451
BpuMI	CCSGG	2 cut(s)	1171, 2912
BsaAI	YACGTR	1 cut(s)	2624
BsaI	GGTCTC	2 cut(s)	484, 2505
BsaJI	CCNNGG	5 cut(s)	972, 1815, 1883, 2526, 2680
Bsc4I	CCNNNNNNNGG	5 cut(s)	1725, 1777, 1854, 2686, 2910
Bse118I	RCCGGY	1 cut(s)	2761
Bse1I	ACTGG	7 cut(s)	324, 688, 1333, 1361, 1477, 1940, 2098
BseDI	CCNNGG	5 cut(s)	972, 1815, 1883, 2526, 2680
BseGI	GGATG	5 cut(s)	763, 1427, 1883, 2102, 2341
BseLI	CCNNNNNNNGG	5 cut(s)	1725, 1777, 1854, 2686, 2910
BseMII	CTCAG	6 cut(s)	80, 1068, 1126, 1386, 2301, 2441
BseNI	ACTGG	7 cut(s)	324, 688, 1333, 1361, 1477, 1940, 2098
BseRI	GAGGAG	2 cut(s)	386, 2319
BseSI	GKGCMC	1 cut(s)	749
BseYI	CCCAGC	1 cut(s)	59
BsgI	GTGCAG	2 cut(s)	931, 1102
Bsh1236I	CGCG	1 cut(s)	1614
BshFI	GGCC	4 cut(s)	1472, 1703, 1718, 1889
BsiHKAI	GWGCWC	4 cut(s)	378, 675, 1030, 1303
BsiHKCI	CYCGRG	2 cut(s)	162, 2903
BsiSI	CCGG	4 cut(s)	1171, 2762, 2822, 2911
BslFI	GGGAC	5 cut(s)	61, 76, 799, 1153, 1177
BslI	CCNNNNNNNGG	5 cut(s)	1725, 1777, 1854, 2686, 2910
BsmAI	GTCTC	8 cut(s)	100, 484, 1115, 1770, 1893, 2366, 2395, 2505
BsmFI	GGGAC	5 cut(s)	61, 76, 799, 1153, 1177
BsmI	GAATGC	2 cut(s)	731, 2058
BsnI	GGCC	4 cut(s)	1472, 1703, 1718, 1889
Bso31I	GGTCTC	2 cut(s)	484, 2505
BsoBI	CYCGRG	2 cut(s)	162, 2903
Bsp1286I	GDGCHC	7 cut(s)	178, 378, 423, 675, 749, 1030, 1303
Bsp19I	CCATGG	3 cut(s)	972, 2526, 2680
BspANI	GGCC	4 cut(s)	1472, 1703, 1718, 1889
BspCNI	CTCAG	6 cut(s)	79, 1069, 1125, 1385, 2302, 2440
BspFNI	CGCG	1 cut(s)	1614
BspHI	TCATGA	3 cut(s)	430, 1093, 2635
BspLI	GGNNCC	4 cut(s)	1065, 1473, 2552, 2901
BspMAI	CTGCAG	1 cut(s)	2267
BspMI	ACCTGC	2 cut(s)	1700, 2858
BspOI	GCTAGC	1 cut(s)	2732
BspPI	GGATC	5 cut(s)	188, 1048, 1370, 2024, 2477
BspTNI	GGTCTC	2 cut(s)	484, 2505
BsrBI	CCGCTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	2761
BsrI	ACTGG	7 cut(s)	324, 688, 1333, 1361, 1477, 1940, 2098
BssAI	RCCGGY	1 cut(s)	2761
BssECI	CCNNGG	5 cut(s)	972, 1815, 1883, 2526, 2680
BssSI	CACGAG	2 cut(s)	1772, 1926
BssT1I	CCWWGG	5 cut(s)	972, 1815, 1883, 2526, 2680
Bst2BI	CACGAG	2 cut(s)	1772, 1926
BstAPI	GCANNNNNTGC	3 cut(s)	786, 1607, 2293
BstBAI	YACGTR	1 cut(s)	2624
BstC8I	GCNNGC	5 cut(s)	45, 587, 1612, 2730, 2763
BstDEI	CTNAG	7 cut(s)	66, 394, 1077, 1112, 1372, 2310, 2427
BstDSI	CCRYGG	3 cut(s)	972, 2526, 2680
BstEII	GGTNACC	1 cut(s)	2675
BstF5I	GGATG	5 cut(s)	763, 1427, 1883, 2102, 2341
BstFNI	CGCG	1 cut(s)	1614
BstHHI	GCGC	1 cut(s)	2258
BstMAI	GTCTC	8 cut(s)	100, 484, 1115, 1770, 1893, 2366, 2395, 2505
BstNSI	RCATGY	1 cut(s)	589
BstPI	GGTNACC	1 cut(s)	2675
BstSCI	CCNGG	2 cut(s)	1169, 2910
BstSFI	CTRYAG	3 cut(s)	2034, 2263, 2487
BstSLI	GKGCMC	1 cut(s)	749
BstUI	CGCG	1 cut(s)	1614
BstV2I	GAAGAC	2 cut(s)	354, 1334
BstX2I	RGATCY	2 cut(s)	1040, 1375
BstXI	CCANNNNNNTGG	1 cut(s)	2561
BstYI	RGATCY	2 cut(s)	1040, 1375
BsuRI	GGCC	4 cut(s)	1472, 1703, 1718, 1889
BtgI	CCRYGG	3 cut(s)	972, 2526, 2680
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	5 cut(s)	763, 1427, 1883, 2102, 2341
BtsI	GCAGTG	2 cut(s)	352, 1284
BveI	ACCTGC	2 cut(s)	1700, 2858
Cac8I	GCNNGC	5 cut(s)	45, 587, 1612, 2730, 2763
CaiI	CAGNNNCTG	5 cut(s)	59, 530, 1549, 1902, 2504
CciI	TCATGA	3 cut(s)	430, 1093, 2635
CfoI	GCGC	1 cut(s)	2258
Cfr10I	RCCGGY	1 cut(s)	2761
Cfr13I	GGNCC	6 cut(s)	1471, 1702, 1716, 1887, 2141, 2790
Csp6I	GTAC	4 cut(s)	1203, 1480, 1939, 2572
CspCI	CAANNNNNGTGG	2 cut(s)	1293, 1328
CviQI	GTAC	4 cut(s)	1203, 1480, 1939, 2572
DdeI	CTNAG	7 cut(s)	66, 394, 1077, 1112, 1372, 2310, 2427
DraI	TTTAAA	1 cut(s)	2223
EciI	GGCGGA	2 cut(s)	227, 241
Ecl136II	GAGCTC	1 cut(s)	673
Eco130I	CCWWGG	5 cut(s)	972, 1815, 1883, 2526, 2680
Eco24I	GRGCYC	3 cut(s)	178, 423, 675
Eco31I	GGTCTC	2 cut(s)	484, 2505
Eco47I	GGWCC	2 cut(s)	2141, 2790
Eco53kI	GAGCTC	1 cut(s)	673
Eco57I	CTGAAG	2 cut(s)	623, 1471
Eco88I	CYCGRG	2 cut(s)	162, 2903
Eco91I	GGTNACC	1 cut(s)	2675
EcoICRI	GAGCTC	1 cut(s)	673
EcoO109I	RGGNCCY	2 cut(s)	1471, 1887
EcoO65I	GGTNACC	1 cut(s)	2675
EcoRI	GAATTC	1 cut(s)	2271
EcoT14I	CCWWGG	5 cut(s)	972, 1815, 1883, 2526, 2680
EcoT22I	ATGCAT	4 cut(s)	523, 782, 1741, 2060
EcoT38I	GRGCYC	3 cut(s)	178, 423, 675
ErhI	CCWWGG	5 cut(s)	972, 1815, 1883, 2526, 2680
FalI	AAGNNNNNCTT	4 cut(s)	1430, 1462, 2678, 2710
FaqI	GGGAC	5 cut(s)	61, 76, 799, 1153, 1177
FauI	CCCGC	3 cut(s)	449, 735, 2530
FauNDI	CATATG	1 cut(s)	2786
FbaI	TGATCA	1 cut(s)	2164
FblI	GTMKAC	1 cut(s)	331
FokI	GGATG	5 cut(s)	770, 1434, 1890, 2109, 2348
FriOI	GRGCYC	3 cut(s)	178, 423, 675
FspBI	CTAG	6 cut(s)	614, 1628, 1884, 2301, 2667, 2729
FspI	TGCGCA	1 cut(s)	2257
GlaI	GCGC	1 cut(s)	2257
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	1380
HaeIII	GGCC	4 cut(s)	1472, 1703, 1718, 1889
HapII	CCGG	4 cut(s)	1171, 2762, 2822, 2911
HhaI	GCGC	1 cut(s)	2258
Hin6I	GCGC	1 cut(s)	2256
HinP1I	GCGC	1 cut(s)	2256
HincII	GTYRAC	1 cut(s)	2593
HindII	GTYRAC	1 cut(s)	2593
HindIII	AAGCTT	1 cut(s)	2315
HpaII	CCGG	4 cut(s)	1171, 2762, 2822, 2911
HphI	GGTGA	5 cut(s)	960, 1046, 1943, 2824, 2875
Hpy166II	GTNNAC	5 cut(s)	332, 474, 646, 2144, 2593
Hpy188I	TCNGA	9 cut(s)	36, 180, 205, 238, 951, 1375, 1408, 1462, 1803
Hpy8I	GTNNAC	5 cut(s)	332, 474, 646, 2144, 2593
HpyAV	CCTTC	8 cut(s)	22, 165, 721, 1565, 1900, 2007, 2170, 2532
HpyCH4IV	ACGT	2 cut(s)	2623, 2879
HpyF3I	CTNAG	7 cut(s)	66, 394, 1077, 1112, 1372, 2310, 2427
HpySE526I	ACGT	2 cut(s)	2623, 2879
HspAI	GCGC	1 cut(s)	2256
KroI	GCCGGC	1 cut(s)	2761
KroNI	GCCGGC	1 cut(s)	2763
Ksp22I	TGATCA	1 cut(s)	2164
LmnI	GCTCC	6 cut(s)	373, 1063, 1306, 2306, 2550, 2824
LweI	GCATC	6 cut(s)	530, 1845, 1868, 2045, 2087, 2485
MaeI	CTAG	6 cut(s)	614, 1628, 1884, 2301, 2667, 2729
MaeII	ACGT	2 cut(s)	2623, 2879
MaeIII	GTNAC	6 cut(s)	1314, 1634, 1689, 1931, 2675, 2863
MbiI	CCGCTC	1 cut(s)	352
MflI	RGATCY	2 cut(s)	1040, 1375
MhlI	GDGCHC	7 cut(s)	178, 378, 423, 675, 749, 1030, 1303
MlyI	GAGTC	8 cut(s)	31, 58, 83, 94, 308, 588, 895, 2318
MmeI	TCCRAC	3 cut(s)	556, 1781, 2722
Mph1103I	ATGCAT	4 cut(s)	523, 782, 1741, 2060
MroNI	GCCGGC	1 cut(s)	2761
MroXI	GAANNNNTTC	3 cut(s)	731, 919, 2275
MseI	TTAA	5 cut(s)	111, 126, 291, 411, 2222
MslI	CAYNNNNRTG	2 cut(s)	339, 2334
MspA1I	CMGCKG	2 cut(s)	1546, 2612
MspI	CCGG	4 cut(s)	1171, 2762, 2822, 2911
MspR9I	CCNGG	2 cut(s)	1171, 2912
Mva1269I	GAATGC	2 cut(s)	731, 2058
MvnI	CGCG	1 cut(s)	1614
NaeI	GCCGGC	1 cut(s)	2763
NciI	CCSGG	2 cut(s)	1171, 2912
NcoI	CCATGG	3 cut(s)	972, 2526, 2680
NdeI	CATATG	1 cut(s)	2786
NgoMIV	GCCGGC	1 cut(s)	2761
NheI	GCTAGC	1 cut(s)	2728
NlaIV	GGNNCC	4 cut(s)	1065, 1473, 2552, 2901
NmeAIII	GCCGAG	2 cut(s)	19, 270
NmuCI	GTSAC	4 cut(s)	1314, 1689, 1931, 2863
NsbI	TGCGCA	1 cut(s)	2257
NsiI	ATGCAT	4 cut(s)	523, 782, 1741, 2060
NspI	RCATGY	1 cut(s)	589
PaeI	GCATGC	1 cut(s)	589
PagI	TCATGA	3 cut(s)	430, 1093, 2635
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PctI	GAATGC	2 cut(s)	731, 2058
PdiI	GCCGGC	1 cut(s)	2763
PdmI	GAANNNNTTC	3 cut(s)	731, 919, 2275
PfeI	GAWTC	5 cut(s)	50, 826, 1858, 2501, 2780
PflMI	CCANNNNNTGG	1 cut(s)	1777
PfoI	TCCNGGA	1 cut(s)	1169
PleI	GAGTC	8 cut(s)	31, 58, 82, 93, 307, 587, 894, 2318
PpsI	GAGTC	8 cut(s)	31, 58, 82, 93, 307, 587, 894, 2318
Ppu21I	YACGTR	1 cut(s)	2624
PsiI	TTATAA	2 cut(s)	1413, 2342
Psp124BI	GAGCTC	1 cut(s)	675
PspEI	GGTNACC	1 cut(s)	2675
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	4 cut(s)	1065, 1473, 2552, 2901
PspPI	GGNCC	6 cut(s)	1471, 1702, 1716, 1887, 2141, 2790
PstI	CTGCAG	1 cut(s)	2267
PstNI	CAGNNNCTG	5 cut(s)	59, 530, 1549, 1902, 2504
PsuI	RGATCY	2 cut(s)	1040, 1375
PvuII	CAGCTG	1 cut(s)	2612
RsaI	GTAC	4 cut(s)	1204, 1481, 1940, 2573
RsaNI	GTAC	4 cut(s)	1203, 1480, 1939, 2572
RseI	CAYNNNNRTG	2 cut(s)	339, 2334
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	5 cut(s)	111, 126, 291, 411, 2222
Sau96I	GGNCC	6 cut(s)	1471, 1702, 1716, 1887, 2141, 2790
ScaI	AGTACT	1 cut(s)	1481
SchI	GAGTC	8 cut(s)	31, 58, 83, 94, 308, 588, 895, 2318
ScrFI	CCNGG	2 cut(s)	1171, 2912
SduI	GDGCHC	7 cut(s)	178, 378, 423, 675, 749, 1030, 1303
SfaNI	GCATC	6 cut(s)	530, 1845, 1868, 2045, 2087, 2485
SfcI	CTRYAG	3 cut(s)	2034, 2263, 2487
SinI	GGWCC	2 cut(s)	2141, 2790
SmiMI	CAYNNNNRTG	2 cut(s)	339, 2334
SmlI	CTYRAG	2 cut(s)	1243, 1466
SmoI	CTYRAG	2 cut(s)	1243, 1466
SpeI	ACTAGT	1 cut(s)	2666
SphI	GCATGC	1 cut(s)	589
SspI	AATATT	1 cut(s)	1656
SspMI	CTAG	6 cut(s)	614, 1628, 1884, 2301, 2667, 2729
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	2 cut(s)	1169, 2910
StyI	CCWWGG	5 cut(s)	972, 1815, 1883, 2526, 2680
TaiI	ACGT	2 cut(s)	2626, 2882
TaqI	TCGA	2 cut(s)	478, 1566
TaqII	GACCGA	2 cut(s)	725, 2807
TatI	WGTACW	3 cut(s)	1202, 1479, 2571
TauI	GCSGC	2 cut(s)	798, 1549
TfiI	GAWTC	5 cut(s)	50, 826, 1858, 2501, 2780
Tru1I	TTAA	5 cut(s)	111, 126, 291, 411, 2222
Tru9I	TTAA	5 cut(s)	111, 126, 291, 411, 2222
TseFI	GTSAC	4 cut(s)	1314, 1689, 1931, 2863
Tsp45I	GTSAC	4 cut(s)	1314, 1689, 1931, 2863
TspDTI	ATGAA	9 cut(s)	17, 464, 765, 818, 946, 2007, 2264, 2652, 2831
TspGWI	ACGGA	4 cut(s)	78, 1368, 1602, 1773
Van91I	CCANNNNNTGG	1 cut(s)	1777
VpaK11BI	GGWCC	2 cut(s)	2141, 2790
XapI	RAATTY	5 cut(s)	765, 2218, 2271, 2558, 2798
XceI	RCATGY	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2241
XmaJI	CCTAGG	1 cut(s)	1883
XmiI	GTMKAC	1 cut(s)	331
XmnI	GAANNNNTTC	3 cut(s)	731, 919, 2275
XspI	CTAG	6 cut(s)	614, 1628, 1884, 2301, 2667, 2729
ZrmI	AGTACT	1 cut(s)	1481
Zsp2I	ATGCAT	4 cut(s)	523, 782, 1741, 2060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.