Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

10461679 .. 10469495

Gene Structure 7817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGAAGCGGGAATTGGCTTGTGTATTGGGGGGCCAGACGCTCGCTGATTCAGTGGCTGGGACTAAGACCGAGTCCCAGACGAGTCCTTTTGTGCGTGTTTATGAGAGAGTTAATTATAAGAGGTTTAAGGGTGCGGTTGTGAATGGTGTGATTGTTTATACCCGAGAGAGAAGGGCTCGGATCAATGGCGGTAATGGGGTTTCGGGTGGCGCAGAGATAAATGGGTTTAAGAGCTCGGAAAAGCTGAGAATTGACGGAAGCCCTTCTCCTCAATTAGTTGAATGTTTAGTTAAAGATGAGGCAAATGGCAATTTGGTGATACCCAGGTGTAGAAATGAGGGTGACAGTGAGCAGTCAGGGCCTCCGGGTGATGAGCACGATTTGGAAGCTGACTTGGTTGAAGTTATAGTTAAAGATCAGCCCCATTATCATGAGGGAGAAACGGATACATCGGGGTCTACTGTGGAAAATGCATCAGGGTCTGTGCCAGTTGAAGTGATTTCAAATATAGAGGGGGAAGATACAGTTGGAGTTGGCTTGCTGGCATCGCCACTGAAGAATAAGCTAGAATTGAAAATGTCAAAGAAGATTGTGCTGGACAGGAAACCTACAACAGTCAAAGAGCTATTTGACACTGGCTTGGTTGATGGGGTGCAAGTTATTTACATGGGCAGCAAGAAGGCATTCGGTCTGCGGGGCATAATACAGGATGGTGGGATTTTGTGTTCATGCATACCGTGCAACGGCTGCAGAGTTATTCCACCATCCCAATTTGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTATATTTGTTTTGAGAACGGAAGGAGTCTGCTTGATCTCTTGAAGTCATGCAGAAATGCTTCTTTGCAAGCATTGGAGACAACAATTCAGAAGTTCATTAGTTCTTCACCCATGGAAAAGTATTTTAGTTGTAAAAAATGTAGTGTGTCTTTTCCTCCATACTGTGCTCTGGGTGATGGATCTCTTTGCTATTCTTGCATGGAGCCGAAGCAGCCTGAGTGCAGTCTAACTCATGAGAATGGCAACAGTCTCAGATCCTTGATGCCTGTTTCAATCTCGAAGTCCTCAAATAGTGCAATCTCAAAGTCCCTGAAAAGTGCAATCATGAAGTCCCCAAAAATTGGAATCTCAAAGTCCCTGAGAAGTGAAATCTTAAAACCCCTAAGAAGTGCAATCTCAAAACCCCTGAAAAGTTCAATCTCAACTCCCCTGAAAAGTGCAGTGTCAAAATCCCCCAAAAGTGCTCCACTCTATATGTCACTGGAAAAGAAGACCCAGTTGAAGACAAGAAAGTTATCAACACCACTTTTGATCTCAGATCCCTCCAAAAGTGCTTCTCCAGAGTGTTCAGATTATAAGAGTAGATGGAAGATAACACAAAAATCATCTAAACCAATTCTGATCTCAAGGTCCCTTGGTTCTTCTTCAGTGTATTTTTCTTCGCTGAAGAAAAGTCAGTGGAGGATTACGACAAAAGATCAGCGGCTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGACGGAACAGAAGTAGCATATTATGCACGTGGGCAGAAATTACTAGTTGGTTACAAGAAAGGATTTGGAATATTTTGCCGTTGCTGCAACAGTGAGGTCAGCCCGTCACAGTTTGAGGCCCATGCAGGTTGGGCCACACGCAGGAAACCCTATGCATACATTTACACATCTAACGGAGTGTCTCTCCACGAGTTGGCTTTATCTTTGTCAAGAGGTCGGAAATATGCAGCCAAGGATAATGATGACTTGTGCATCATTTGTGCAGATGGTGGGAATCTTGTGCTTTGTGATGGATGCCCAAGGGCCTTCCACAGAGACTGTGCCTCTCTACCAAGTGTTCCTCGTGGTGACTGGTATTGTAAGTTTTGCCAAAATATGTTTCAAAGAGAAAAGTTTGTGGAACATAATGAAAATGCTGTTGCCGCTGGAAGGATTGATGGAATTGATCCTATAGAACAGATAACCCAAAGATGCATTCGTATTGTCAAAGACATAGAAGCTGAACTAACTGGATGCTTTTTATGTAGAGGTTATGATTTTAGCAAATCAGGATTTGGTCCACGAACTATTATACTGTGTGATCAGTGTGAGAAGGAATTTCATGTTGGCTGTTTGAAGAAACATAAAATGTCAAATTTAAAGGAATTGCCAAAAGGGAAGTGGTTTTGTTGTGCAGACTGCAGCAGAATTCATTCTATTTTGCAAAAGTTGCTAACTAGAGGAGCGGAGAAGCTTCCTGACTCTCTTTTGGATGTTATAAAGAAGAAGATGGAGGCAAATGGTTTGGAGGCTGTCAGTGGATTTGATGTGAGATGGAGACTTATTAGTGGCAGAATTGCTTCTCAGGAATGTCGCTTATTACTTTCAAAGGCTGTTGCTATCTTTCATGATTGCTTTGATCCTATAATTGACGCTGAATCTGGGCGAGACCTTATTCCAGCCATGGTTTATGGAAGGAATGTTAGGAGCCAAGAATTCGGAAATATGTGCTGTGCAATACTGATGGTCAACTCAACTGTGGTATCAGCTGGAATTATACGTGTTTTTGGTCATGAAGTTGCTGAACTTCCTTTGGTCGCCACTAGTAATGGTAACCATGGCAAGGGCTACTTCCAATTATTGTTTTCCTGCGTTGAGAAGCTGCTAGCTTTCTTGAGTGTGAAGAGTATTGTGTTGCCGGCTGCTGAAGAAGCAGAATCCATATGGACCGACAGATTTGGTTTTACAAAAATGAAGCCGGAACAGCTTACCAACTACAGAAGAACTTGCTACCAAATGGTGACCTTCAAAGGAACATCGATGCTACATAAACGGGTTCCCGAGTGTCGGGTTGTAAGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

966

Amino Acids

106.45

Weight (kDa)

9.04

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	233 - 288	9.5e-12	Tify domain binding domain
TDBD	PF16135	538 - 583	1.4e-13	Tify domain binding domain
PHD-1st_NSD	PF23011	598 - 642	1.7e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	602 - 641	2.5e-07	PHD-finger
IDM1_C	PF23209	817 - 955	5.1e-51	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	117, 1389, 2312
Acc36I	ACCTGC	1 cut(s)	1670
AccB7I	CCANNNNNTGG	2 cut(s)	1154, 1747
AccBSI	CCGCTC	1 cut(s)	2279
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	7 cut(s)	7, 134, 189, 694, 1516, 1977, 2279
AclWI	GGATC	6 cut(s)	188, 1000, 1062, 1346, 1994, 2447
AcsI	RAATTY	4 cut(s)	2150, 2188, 2241, 2528
AcuI	CTGAAG	4 cut(s)	575, 1443, 1499, 2760
AcvI	CACGTG	1 cut(s)	1583
AfaI	GTAC	1 cut(s)	2893
AfiI	CCNNNNNNNGG	7 cut(s)	743, 1154, 1695, 1747, 1983, 2656, 2880
AflIII	ACRYGT	1 cut(s)	2593
AhlI	ACTAGT	2 cut(s)	1597, 2636
AjnI	CCWGG	1 cut(s)	323
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
Alw21I	GWGCWC	4 cut(s)	236, 378, 982, 1279
Alw26I	GTCTC	6 cut(s)	884, 1067, 1740, 1863, 2365, 2475
AlwI	GGATC	6 cut(s)	188, 1000, 1062, 1346, 1994, 2447
AlwNI	CAGNNNCTG	4 cut(s)	56, 482, 1519, 1872
Ama87I	CYCGRG	2 cut(s)	162, 2873
AoxI	GGCC	5 cut(s)	31, 359, 1671, 1686, 1857
ApoI	RAATTY	4 cut(s)	2150, 2188, 2241, 2528
Asp700I	GAANNNNTTC	5 cut(s)	262, 683, 871, 2245, 2392
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	8 cut(s)	31, 359, 1443, 1672, 1686, 1857, 2111, 2760
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	7 cut(s)	328, 353, 380, 912, 998, 1913, 2845
AsuNHI	GCTAGC	1 cut(s)	2698
AvaI	CYCGRG	2 cut(s)	162, 2873
AvaII	GGWCC	3 cut(s)	1443, 2111, 2760
BaeI	ACNNNNGTAYC	4 cut(s)	311, 344, 2559, 2592
BanII	GRGCYC	2 cut(s)	178, 236
BauI	CACGAG	2 cut(s)	1742, 1896
BbrPI	CACGTG	1 cut(s)	1583
BbsI	GAAGAC	2 cut(s)	1310, 1322
Bbv12I	GWGCWC	4 cut(s)	236, 378, 982, 1279
BceAI	ACGGC	2 cut(s)	760, 1617
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	2134
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	6 cut(s)	884, 1067, 1740, 1863, 2365, 2475
BcuI	ACTAGT	2 cut(s)	1597, 2636
BfaI	CTAG	5 cut(s)	566, 1598, 2271, 2637, 2699
BfmI	CTRYAG	4 cut(s)	748, 2004, 2233, 2809
BfuAI	ACCTGC	1 cut(s)	1670
BfuI	GTATCC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	325, 366
Bme18I	GGWCC	3 cut(s)	1443, 2111, 2760
BmeT110I	CYCGRG	2 cut(s)	162, 2873
BmgT120I	GGNCC	8 cut(s)	31, 359, 1443, 1672, 1686, 1857, 2111, 2760
BmiI	GGNNCC	5 cut(s)	32, 1017, 1445, 2522, 2871
BmrFI	CCNGG	2 cut(s)	325, 366
BmrI	ACTGGG	1 cut(s)	1303
BmsI	GCATC	8 cut(s)	482, 554, 1065, 1815, 1838, 2015, 2057, 2844
BmtI	GCTAGC	1 cut(s)	2702
BmuI	ACTGGG	1 cut(s)	1303
BpiI	GAAGAC	2 cut(s)	1310, 1322
BplI	GAGNNNNNCTC	4 cut(s)	160, 192, 1722, 1754
BpmI	CTGGAG	1 cut(s)	1356
BpuEI	CTTGAG	2 cut(s)	1423, 2728
BpuMI	CCSGG	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	2852
BsaAI	YACGTR	3 cut(s)	1583, 2594, 2895
BsaI	GGTCTC	1 cut(s)	2475
BsaJI	CCNNGG	7 cut(s)	323, 924, 1447, 1785, 1853, 2496, 2650
Bsc4I	CCNNNNNNNGG	7 cut(s)	743, 1154, 1695, 1747, 1983, 2656, 2880
Bse118I	RCCGGY	1 cut(s)	2731
Bse1I	ACTGG	6 cut(s)	488, 640, 1299, 1309, 1910, 2068
BseBI	CCWGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	2852
BseDI	CCNNGG	7 cut(s)	323, 924, 1447, 1785, 1853, 2496, 2650
BseGI	GGATG	5 cut(s)	715, 764, 1853, 2072, 2311
BseLI	CCNNNNNNNGG	7 cut(s)	743, 1154, 1695, 1747, 1983, 2656, 2880
BseMII	CTCAG	6 cut(s)	236, 1020, 1078, 1163, 1362, 2411
BseNI	ACTGG	6 cut(s)	488, 640, 1299, 1309, 1910, 2068
BseRI	GAGGAG	2 cut(s)	258, 2289
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	4 cut(s)	1054, 1272, 1836, 2247
BshFI	GGCC	5 cut(s)	33, 361, 1673, 1688, 1859
BshVI	ATCGAT	1 cut(s)	2852
BsiHKAI	GWGCWC	4 cut(s)	236, 378, 982, 1279
BsiHKCI	CYCGRG	2 cut(s)	162, 2873
BsiSI	CCGG	3 cut(s)	365, 2732, 2792
BslFI	GGGAC	6 cut(s)	58, 73, 1105, 1129, 1153, 1429
BslI	CCNNNNNNNGG	7 cut(s)	743, 1154, 1695, 1747, 1983, 2656, 2880
BsmAI	GTCTC	6 cut(s)	884, 1067, 1740, 1863, 2365, 2475
BsmFI	GGGAC	6 cut(s)	58, 73, 1105, 1129, 1153, 1429
BsmI	GAATGC	2 cut(s)	683, 2028
BsnI	GGCC	5 cut(s)	33, 361, 1673, 1688, 1859
Bso31I	GGTCTC	1 cut(s)	2475
BsoBI	CYCGRG	2 cut(s)	162, 2873
Bsp1286I	GDGCHC	5 cut(s)	178, 236, 378, 982, 1279
Bsp19I	CCATGG	3 cut(s)	924, 2496, 2650
BspACI	CCGC	7 cut(s)	7, 134, 189, 694, 1516, 1977, 2279
BspANI	GGCC	5 cut(s)	33, 361, 1673, 1688, 1859
BspCNI	CTCAG	6 cut(s)	237, 1021, 1077, 1164, 1361, 2410
BspDI	ATCGAT	1 cut(s)	2852
BspHI	TCATGA	5 cut(s)	430, 1045, 1137, 2440, 2605
BspLI	GGNNCC	5 cut(s)	32, 1017, 1445, 2522, 2871
BspMAI	CTGCAG	2 cut(s)	752, 2237
BspMI	ACCTGC	1 cut(s)	1670
BspOI	GCTAGC	1 cut(s)	2702
BspPI	GGATC	6 cut(s)	188, 1000, 1062, 1346, 1994, 2447
BspTNI	GGTCTC	1 cut(s)	2475
BsrBI	CCGCTC	1 cut(s)	2279
BsrFI	RCCGGY	1 cut(s)	2731
BsrI	ACTGG	6 cut(s)	488, 640, 1299, 1309, 1910, 2068
BssAI	RCCGGY	1 cut(s)	2731
BssECI	CCNNGG	7 cut(s)	323, 924, 1447, 1785, 1853, 2496, 2650
BssSI	CACGAG	2 cut(s)	1742, 1896
BssT1I	CCWWGG	6 cut(s)	924, 1447, 1785, 1853, 2496, 2650
Bst2BI	CACGAG	2 cut(s)	1742, 1896
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	2711
BstAPI	GCANNNNNTGC	4 cut(s)	738, 747, 1577, 2263
BstBAI	YACGTR	3 cut(s)	1583, 2594, 2895
BstC8I	GCNNGC	6 cut(s)	42, 539, 543, 882, 2700, 2733
BstDEI	CTNAG	8 cut(s)	63, 245, 1029, 1064, 1172, 1196, 1348, 2397
BstDSI	CCRYGG	3 cut(s)	924, 2496, 2650
BstEII	GGTNACC	2 cut(s)	2645, 2833
BstF5I	GGATG	5 cut(s)	715, 764, 1853, 2072, 2311
BstHHI	GCGC	1 cut(s)	212
BstMAI	GTCTC	6 cut(s)	884, 1067, 1740, 1863, 2365, 2475
BstNI	CCWGG	1 cut(s)	325
BstPI	GGTNACC	2 cut(s)	2645, 2833
BstSCI	CCNGG	2 cut(s)	323, 364
BstSFI	CTRYAG	4 cut(s)	748, 2004, 2233, 2809
BstV2I	GAAGAC	2 cut(s)	1310, 1322
BstX2I	RGATCY	3 cut(s)	992, 1067, 1351
BstYI	RGATCY	3 cut(s)	992, 1067, 1351
Bsu15I	ATCGAT	1 cut(s)	2852
BsuI	GTATCC	1 cut(s)	439
BsuRI	GGCC	5 cut(s)	33, 361, 1673, 1688, 1859
BsuTUI	ATCGAT	1 cut(s)	2852
BtgI	CCRYGG	3 cut(s)	924, 2496, 2650
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	5 cut(s)	715, 764, 1853, 2072, 2311
BtsI	GCAGTG	1 cut(s)	1260
BveI	ACCTGC	1 cut(s)	1670
Cac8I	GCNNGC	6 cut(s)	42, 539, 543, 882, 2700, 2733
CaiI	CAGNNNCTG	4 cut(s)	56, 482, 1519, 1872
CciI	TCATGA	5 cut(s)	430, 1045, 1137, 2440, 2605
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	2731
Cfr13I	GGNCC	8 cut(s)	31, 359, 1443, 1672, 1686, 1857, 2111, 2760
ClaI	ATCGAT	1 cut(s)	2852
CseI	GACGC	2 cut(s)	46, 2474
Csp6I	GTAC	1 cut(s)	2892
CviQI	GTAC	1 cut(s)	2892
DdeI	CTNAG	8 cut(s)	63, 245, 1029, 1064, 1172, 1196, 1348, 2397
DraI	TTTAAA	1 cut(s)	2193
Eam1104I	CTCTTC	1 cut(s)	2711
EarI	CTCTTC	1 cut(s)	2711
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	6 cut(s)	924, 1447, 1785, 1853, 2496, 2650
Eco24I	GRGCYC	2 cut(s)	178, 236
Eco31I	GGTCTC	1 cut(s)	2475
Eco47I	GGWCC	3 cut(s)	1443, 2111, 2760
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	4 cut(s)	575, 1443, 1499, 2760
Eco72I	CACGTG	1 cut(s)	1583
Eco88I	CYCGRG	2 cut(s)	162, 2873
Eco91I	GGTNACC	2 cut(s)	2645, 2833
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	3 cut(s)	359, 1443, 1857
EcoO65I	GGTNACC	2 cut(s)	2645, 2833
EcoRI	GAATTC	2 cut(s)	2241, 2528
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	6 cut(s)	924, 1447, 1785, 1853, 2496, 2650
EcoT22I	ATGCAT	4 cut(s)	475, 734, 1711, 2030
EcoT38I	GRGCYC	2 cut(s)	178, 236
ErhI	CCWWGG	6 cut(s)	924, 1447, 1785, 1853, 2496, 2650
FalI	AAGNNNNNCTT	2 cut(s)	2648, 2680
FaqI	GGGAC	6 cut(s)	58, 73, 1105, 1129, 1153, 1429
FauI	CCCGC	1 cut(s)	687
FauNDI	CATATG	1 cut(s)	2756
FbaI	TGATCA	1 cut(s)	2134
FblI	GTMKAC	1 cut(s)	458
FokI	GGATG	5 cut(s)	722, 751, 1860, 2079, 2318
FriOI	GRGCYC	2 cut(s)	178, 236
FspBI	CTAG	5 cut(s)	566, 1598, 2271, 2637, 2699
GlaI	GCGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	1356
HaeIII	GGCC	5 cut(s)	33, 361, 1673, 1688, 1859
HapII	CCGG	3 cut(s)	365, 2732, 2792
HgaI	GACGC	2 cut(s)	46, 2474
HhaI	GCGC	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	2563
HindII	GTYRAC	1 cut(s)	2563
HindIII	AAGCTT	1 cut(s)	2285
HpaII	CCGG	3 cut(s)	365, 2732, 2792
HphI	GGTGA	7 cut(s)	328, 353, 380, 912, 998, 1913, 2845
Hpy166II	GTNNAC	3 cut(s)	459, 2114, 2563
Hpy188I	TCNGA	9 cut(s)	180, 238, 903, 1067, 1351, 1384, 1434, 1773, 2534
Hpy8I	GTNNAC	3 cut(s)	459, 2114, 2563
HpyCH4IV	ACGT	3 cut(s)	1582, 2593, 2894
HpyF3I	CTNAG	8 cut(s)	63, 245, 1029, 1064, 1172, 1196, 1348, 2397
HpySE526I	ACGT	3 cut(s)	1582, 2593, 2894
HspAI	GCGC	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	2731
KroNI	GCCGGC	1 cut(s)	2733
Ksp22I	TGATCA	1 cut(s)	2134
LmnI	GCTCC	4 cut(s)	1015, 1282, 2276, 2520
LweI	GCATC	8 cut(s)	482, 554, 1065, 1815, 1838, 2015, 2057, 2844
MaeI	CTAG	5 cut(s)	566, 1598, 2271, 2637, 2699
MaeII	ACGT	3 cut(s)	1582, 2593, 2894
MaeIII	GTNAC	7 cut(s)	341, 1290, 1604, 1659, 1901, 2645, 2833
MbiI	CCGCTC	1 cut(s)	2279
MflI	RGATCY	3 cut(s)	992, 1067, 1351
MhlI	GDGCHC	5 cut(s)	178, 236, 378, 982, 1279
MlyI	GAGTC	4 cut(s)	80, 91, 847, 2288
MmeI	TCCRAC	2 cut(s)	508, 1751
Mph1103I	ATGCAT	4 cut(s)	475, 734, 1711, 2030
MroNI	GCCGGC	1 cut(s)	2731
MroXI	GAANNNNTTC	5 cut(s)	262, 683, 871, 2245, 2392
MseI	TTAA	7 cut(s)	111, 126, 228, 291, 411, 1187, 2192
MslI	CAYNNNNRTG	2 cut(s)	429, 1050
MspA1I	CMGCKG	3 cut(s)	1516, 1979, 2582
MspI	CCGG	3 cut(s)	365, 2732, 2792
MspR9I	CCNGG	2 cut(s)	325, 366
Mva1269I	GAATGC	2 cut(s)	683, 2028
MvaI	CCWGG	1 cut(s)	325
NaeI	GCCGGC	1 cut(s)	2733
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	3 cut(s)	924, 2496, 2650
NdeI	CATATG	1 cut(s)	2756
NgoMIV	GCCGGC	1 cut(s)	2731
NheI	GCTAGC	1 cut(s)	2698
NlaIV	GGNNCC	5 cut(s)	32, 1017, 1445, 2522, 2871
NmuCI	GTSAC	5 cut(s)	341, 1290, 1659, 1901, 2833
NsiI	ATGCAT	4 cut(s)	475, 734, 1711, 2030
PagI	TCATGA	5 cut(s)	430, 1045, 1137, 2440, 2605
PctI	GAATGC	2 cut(s)	683, 2028
PdiI	GCCGGC	1 cut(s)	2733
PdmI	GAANNNNTTC	5 cut(s)	262, 683, 871, 2245, 2392
PfeI	GAWTC	6 cut(s)	47, 778, 1158, 1828, 2471, 2750
PflFI	GACNNNGTC	1 cut(s)	70
PflMI	CCANNNNNTGG	2 cut(s)	1154, 1747
PleI	GAGTC	4 cut(s)	79, 90, 846, 2288
PmaCI	CACGTG	1 cut(s)	1583
PmlI	CACGTG	1 cut(s)	1583
PpsI	GAGTC	4 cut(s)	79, 90, 846, 2288
Ppu21I	YACGTR	3 cut(s)	1583, 2594, 2895
PpuMI	RGGWCCY	1 cut(s)	1443
PsiI	TTATAA	3 cut(s)	117, 1389, 2312
Psp124BI	GAGCTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	1443
Psp6I	CCWGG	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	1583
PspEI	GGTNACC	2 cut(s)	2645, 2833
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	5 cut(s)	32, 1017, 1445, 2522, 2871
PspPI	GGNCC	8 cut(s)	31, 359, 1443, 1672, 1686, 1857, 2111, 2760
PspPPI	RGGWCCY	1 cut(s)	1443
PstI	CTGCAG	2 cut(s)	752, 2237
PstNI	CAGNNNCTG	4 cut(s)	56, 482, 1519, 1872
PsuI	RGATCY	3 cut(s)	992, 1067, 1351
PsyI	GACNNNGTC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	2582
RsaI	GTAC	1 cut(s)	2893
RsaNI	GTAC	1 cut(s)	2892
RseI	CAYNNNNRTG	2 cut(s)	429, 1050
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	7 cut(s)	111, 126, 228, 291, 411, 1187, 2192
Sau96I	GGNCC	8 cut(s)	31, 359, 1443, 1672, 1686, 1857, 2111, 2760
SchI	GAGTC	4 cut(s)	80, 91, 847, 2288
ScrFI	CCNGG	2 cut(s)	325, 366
SduI	GDGCHC	5 cut(s)	178, 236, 378, 982, 1279
SfaNI	GCATC	8 cut(s)	482, 554, 1065, 1815, 1838, 2015, 2057, 2844
SfcI	CTRYAG	4 cut(s)	748, 2004, 2233, 2809
SinI	GGWCC	3 cut(s)	1443, 2111, 2760
SmiMI	CAYNNNNRTG	2 cut(s)	429, 1050
SmlI	CTYRAG	2 cut(s)	1438, 2707
SmoI	CTYRAG	2 cut(s)	1438, 2707
SpeI	ACTAGT	2 cut(s)	1597, 2636
SsiI	CCGC	7 cut(s)	7, 134, 189, 694, 1516, 1977, 2279
SspI	AATATT	1 cut(s)	1626
SspMI	CTAG	5 cut(s)	566, 1598, 2271, 2637, 2699
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	323, 364
StyI	CCWWGG	6 cut(s)	924, 1447, 1785, 1853, 2496, 2650
TaiI	ACGT	3 cut(s)	1585, 2596, 2897
TaqI	TCGA	2 cut(s)	1091, 2852
TaqII	GACCGA	3 cut(s)	83, 677, 2777
TauI	GCSGC	2 cut(s)	1519, 1979
TfiI	GAWTC	6 cut(s)	47, 778, 1158, 1828, 2471, 2750
Tru1I	TTAA	7 cut(s)	111, 126, 228, 291, 411, 1187, 2192
Tru9I	TTAA	7 cut(s)	111, 126, 228, 291, 411, 1187, 2192
TseFI	GTSAC	5 cut(s)	341, 1290, 1659, 1901, 2833
Tsp45I	GTSAC	5 cut(s)	341, 1290, 1659, 1901, 2833
TspGWI	ACGGA	5 cut(s)	270, 458, 846, 1572, 1743
Tth111I	GACNNNGTC	1 cut(s)	70
Van91I	CCANNNNNTGG	2 cut(s)	1154, 1747
VpaK11BI	GGWCC	3 cut(s)	1443, 2111, 2760
XapI	RAATTY	4 cut(s)	2150, 2188, 2241, 2528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2211
XmiI	GTMKAC	1 cut(s)	458
XmnI	GAANNNNTTC	5 cut(s)	262, 683, 871, 2245, 2392
XspI	CTAG	5 cut(s)	566, 1598, 2271, 2637, 2699
Zsp2I	ATGCAT	4 cut(s)	475, 734, 1711, 2030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.