Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007633.1

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

128451 .. 130536

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007633.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgttctggtggctttatagaagtcctaacagagttgaggatccctcaaagccatggccaattattctctggctccaaggtggacctggagcttcaggagttgggattgggaacttcgaagaggttgggccattggacaccaatttgaagccaaggaattcaacgtggttgcaaaaggcagatcttttatttgtggataacccagttggaaccggattcagttttgcgtttggtctgcggggcacaataagagacggagggattttgtgttcatgtatatcttgcaatggctgcagagtcattccaccatctcaattcgagattcatgcttgtaaaacatacagacgagcagcacagtacatttgccttgagaatggaaggagcctgcttgatcttatgaaggtgtgcaggaatgcttctctgcatacattggaggcaacaattcagaagttcatcaattcttcaccaatagacaaatatttcacttgtaaaaactgtagcgtctcctttcctccttattgtgctctggaagatggatcgctttgctattcttgcatggagtcaaataaacctcacagcccatctcaggaatctagtaaaaatctcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

203

Amino Acids

22.61

Weight (kDa)

8.44

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	3 cut(s)	35, 48, 544
AcoI	YGGCCR	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	2 cut(s)	148, 162
AjnI	CCWGG	1 cut(s)	85
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	2 cut(s)	246, 508
AlwI	GGATC	3 cut(s)	35, 48, 544
AoxI	GGCC	2 cut(s)	56, 128
ApeKI	GCWGC	2 cut(s)	291, 350
ApoI	RAATTY	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	83, 128
AsuHPI	GGTGA	1 cut(s)	456
AsuII	TTCGAA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	278, 362
BccI	CCATC	3 cut(s)	316, 527, 589
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	246, 508
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	2 cut(s)	292, 496
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	292, 351
BlsI	GCNGC	2 cut(s)	293, 352
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	83, 128
BmiI	GGNNCC	4 cut(s)	42, 74, 211, 383
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	53, 76, 152
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	53, 76, 152
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	278, 362
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	2 cut(s)	58, 130
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	246, 508
BsmBI	CGTCTC	2 cut(s)	246, 508
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	58, 130
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	245, 526
Bsp143I	GATC	4 cut(s)	40, 181, 391, 536
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	2 cut(s)	58, 130
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	4 cut(s)	42, 74, 211, 383
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	3 cut(s)	35, 48, 544
BspT104I	TTCGAA	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	53, 76, 152
BssMI	GATC	4 cut(s)	40, 181, 391, 536
BssT1I	CCWWGG	3 cut(s)	53, 76, 152
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	357, 497
Bst6I	CTCTTC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	585, 605
BstDSI	CCRYGG	1 cut(s)	53
BstKTI	GATC	4 cut(s)	43, 184, 394, 539
BstMAI	GTCTC	2 cut(s)	246, 508
BstMBI	GATC	4 cut(s)	40, 181, 391, 536
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 552
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	292, 496
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	278, 362
BstX2I	RGATCY	2 cut(s)	40, 181
BstYI	RGATCY	2 cut(s)	40, 181
BsuRI	GGCC	2 cut(s)	58, 130
BtgI	CCRYGG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	386
Cfr13I	GGNCC	2 cut(s)	83, 128
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	54, 273, 326, 556
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	585, 605
DpnI	GATC	4 cut(s)	42, 183, 393, 538
DpnII	GATC	4 cut(s)	40, 181, 391, 536
EaeI	YGGCCR	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	3 cut(s)	53, 76, 152
Eco47I	GGWCC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	3 cut(s)	53, 76, 152
ErhI	CCWWGG	3 cut(s)	53, 76, 152
Esp3I	CGTCTC	2 cut(s)	246, 508
FaeI	CATG	4 cut(s)	57, 276, 329, 559
FaiI	YATR	9 cut(s)	18, 55, 274, 278, 327, 340, 398, 426, 557
FatI	CATG	4 cut(s)	53, 272, 325, 555
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	292, 351
Fsp4HI	GCNGC	2 cut(s)	292, 351
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	2 cut(s)	292, 351
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	58, 130
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	490
Hin1II	CATG	4 cut(s)	57, 276, 329, 559
HinfI	GANTC	5 cut(s)	216, 297, 322, 560, 590
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	456
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	447, 608
Hpy188III	TCNNGA	4 cut(s)	96, 319, 527, 587
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	372, 394
HpyCH4III	ACNGT	2 cut(s)	357, 497
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	6 cut(s)	172, 285, 294, 408, 424, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 552
HpyF3I	CTNAG	2 cut(s)	585, 605
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	4 cut(s)	57, 276, 329, 559
Kzo9I	GATC	4 cut(s)	40, 181, 391, 536
LmnI	GCTCC	3 cut(s)	78, 89, 381
Lsp1109I	GCAGC	2 cut(s)	278, 362
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	164
MalI	GATC	4 cut(s)	42, 183, 393, 538
MboI	GATC	4 cut(s)	40, 181, 391, 536
MboII	GAAGA	3 cut(s)	131, 453, 542
MflI	RGATCY	2 cut(s)	40, 181
MhlI	GDGCHC	2 cut(s)	245, 526
MlsI	TGGCCA	1 cut(s)	58
MluCI	AATT	6 cut(s)	60, 142, 157, 314, 441, 457
MluNI	TGGCCA	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	306, 569
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	7 cut(s)	31, 55, 115, 251, 427, 522, 582
Mox20I	TGGCCA	1 cut(s)	58
MscI	TGGCCA	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	58
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	291, 552
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	40, 181, 391, 536
NlaIII	CATG	4 cut(s)	57, 276, 329, 559
NlaIV	GGNNCC	4 cut(s)	42, 74, 211, 383
NspV	TTCGAA	1 cut(s)	117
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	216, 322, 590
PkrI	GCNGC	2 cut(s)	293, 352
PleI	GAGTC	2 cut(s)	305, 568
PpsI	GAGTC	2 cut(s)	305, 568
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	42, 74, 211, 383
PspPI	GGNCC	2 cut(s)	83, 128
PstI	CTGCAG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	40, 181
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	2 cut(s)	292, 351
Sau3AI	GATC	4 cut(s)	40, 181, 391, 536
Sau96I	GGNCC	2 cut(s)	83, 128
SchI	GAGTC	2 cut(s)	306, 569
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	245, 526
SetI	ASST	7 cut(s)	82, 88, 94, 126, 167, 405, 574
SfcI	CTRYAG	2 cut(s)	292, 496
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	6 cut(s)	60, 142, 157, 314, 441, 457
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	3 cut(s)	53, 76, 152
TaaI	ACNGT	2 cut(s)	357, 497
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	117, 318
TasI	AATT	6 cut(s)	60, 142, 157, 314, 441, 457
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	216, 322, 590
TseI	GCWGC	2 cut(s)	291, 350
TspDTI	ATGAA	4 cut(s)	261, 314, 413, 442
TspGWI	ACGGA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	66, 83
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.