Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

35751562 .. 35753188

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGGTGTGCAGGAATGCTTCTCTGCATACATTGGAGGCAACAATTCAGAAGTTCATCAATTCTTCACCAATAGACAAATATTTCACTTGTAAAAACTGTAGCGTCTCCTTTCCTCCTTATTGTGCTCTGGAAGATGGATCGCTTTGCTATTCTTGCATGGAGTCAAATAAACCTCACAGCCCATCTCAGGAATCTAGTAAAAATCTCAGAGCTTTGCTGCTTGCTTCGTTGTCAATGTCCCCGAAAAATGCTAAGTCCCCAAAAACTGCAACACCAAAGTCTGCAAGAAATGGAATTTTAAAGACTCCTAAAAGTACAATCTTAAGGCCCCCAAGAGGTGCTATCTCAAAGTCCCCCAAAAGTGCAATGTCAGTGTCAGTGTTCGAAGCTATGACCGGAGACTTCATGAGACCCAGAATTGATGAGGTAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

9.63

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	297
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	190, 338
AflII	CTTAAG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	215, 392
AluI	AGCT	2 cut(s)	215, 392
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	3 cut(s)	112, 396, 406
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	60
AsuII	TTCGAA	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	131, 193
BcoDI	GTCTC	3 cut(s)	112, 396, 406
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	100
BfrI	CTTAAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 338
Bse3DI	GCAATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	190, 338
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	203, 223
BseXI	GCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	3 cut(s)	226, 244, 340
BslI	CCNNNNNNNGG	2 cut(s)	190, 338
BsmAI	GTCTC	3 cut(s)	112, 396, 406
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	3 cut(s)	226, 244, 340
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	331
Bso31I	GGTCTC	1 cut(s)	406
Bsp119I	TTCGAA	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	202, 222
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	148
BspT104I	TTCGAA	1 cut(s)	387
BspTI	CTTAAG	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	375
BssMI	GATC	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	325
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	189, 209, 255
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	3 cut(s)	112, 396, 406
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	381, 387
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	160, 409
CviJI	RGCY	4 cut(s)	183, 215, 331, 392
CviKI_1	RGCY	4 cut(s)	183, 215, 331, 392
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	189, 209, 255
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DraI	TTTAAA	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	406
EcoO109I	RGGNCCY	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	2 cut(s)	163, 412
FaiI	YATR	5 cut(s)	30, 161, 395, 410, 439
FaqI	GGGAC	3 cut(s)	226, 244, 340
FatI	CATG	2 cut(s)	159, 408
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	163, 412
HinfI	GANTC	3 cut(s)	164, 194, 307
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	51, 212
Hpy188III	TCNNGA	3 cut(s)	131, 191, 409
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	6 cut(s)	12, 28, 159, 272, 287, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	3 cut(s)	189, 209, 255
Hsp92II	CATG	2 cut(s)	163, 412
Kzo9I	GATC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	116, 176, 412, 430
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	2 cut(s)	57, 146
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	4 cut(s)	45, 61, 297, 420
MlyI	GAGTC	2 cut(s)	173, 301
MnlI	CCTC	5 cut(s)	31, 126, 186, 332, 421
MseI	TTAA	2 cut(s)	302, 326
MspCI	CTTAAG	1 cut(s)	325
MspI	CCGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	163, 412
NlaIV	GGNNCC	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	387
PagI	TCATGA	1 cut(s)	408
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	172, 301
PpsI	GAGTC	2 cut(s)	172, 301
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	330
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	302, 326
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	330
SchI	GAGTC	2 cut(s)	173, 301
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	6 cut(s)	9, 178, 217, 343, 394, 432
SfcI	CTRYAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	45, 61, 297, 420
SspI	AATATT	1 cut(s)	83
SspMI	CTAG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	387
TasI	AATT	4 cut(s)	45, 61, 297, 420
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	302, 326
Tru9I	TTAA	2 cut(s)	302, 326
TscAI	CASTG	2 cut(s)	381, 387
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	17, 46, 397
TspRI	CASTG	2 cut(s)	381, 387
Vha464I	CTTAAG	1 cut(s)	325
XapI	RAATTY	1 cut(s)	297
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.