Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

12232988 .. 12234564

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGCAAAGTCAACAGGGCATCACTTTCTCTCTCGAGGTTGATTAAGTACATGCAAGGAAAGGATAACAAGATTGATGTGGTTGTGGGGACTGTCACTAGCGACATTAGGCGGGAATTGGCTTGTGTTTTGGAGGGCCAAACTCCGCTCGCTGATTCAGTGGCTGGGACTCAGGCCGAGTCCCAGACGAGTCCGTGTGTTGTTTATGAGAGACTTAATCGTAAGAGGTTTAAGGGTACTATTGTGAATGGTGTGATTGTTTATACCCGAGAGAGAAGGGCTCGGATCAATGGCGGTAATGGGGTTTCGGAGGGGGCGGAGATAAATGGGCGGAAGGGCTCGGAAAAGCCGAGAATTGAGGAAACCCCTTCTCATCAATTAGTTGAATGTTTAGTTAAAGATGAGTCAAATTGCAATTTGGAGATACCCAGGTGTAGACATGAGGGTGGCAGTGAGCGGTCAGGGCCTTCGTGTGAGGAGCACGATATGGAAGCAGACTTGGTTGAAATTGTAGTTAAAGATGAGCCCAATTATCATGAGGGGGAAACAGATATGAAAGCCTACTGTGGAAAATGCATCAGGGTCTGTGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

199

Amino Acids

21.89

Weight (kDa)

6.14

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	148, 457
AccI	GTMKAC	1 cut(s)	436
AciI	CCGC	6 cut(s)	112, 146, 294, 317, 331, 457
AclWI	GGATC	1 cut(s)	293
AfaI	GTAC	2 cut(s)	50, 238
AgsI	TTSAA	2 cut(s)	386, 506
AjnI	CCWGG	1 cut(s)	428
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	293
AlwNI	CAGNNNCTG	2 cut(s)	164, 585
Ama87I	CYCGRG	2 cut(s)	34, 267
AoxI	GGCC	3 cut(s)	136, 174, 464
AspS9I	GGNCC	2 cut(s)	136, 464
AvaI	CYCGRG	2 cut(s)	34, 267
BaeI	ACNNNNGTAYC	4 cut(s)	228, 261, 416, 449
BanII	GRGCYC	3 cut(s)	283, 341, 528
Bbv12I	GWGCWC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	430
BmeT110I	CYCGRG	2 cut(s)	34, 267
BmgT120I	GGNCC	2 cut(s)	136, 464
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	2 cut(s)	29, 585
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
BsaJI	CCNNGG	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	138, 176, 466
BsiHKAI	GWGCWC	1 cut(s)	483
BsiHKCI	CYCGRG	2 cut(s)	34, 267
BslFI	GGGAC	3 cut(s)	103, 166, 181
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	3 cut(s)	103, 166, 181
BsnI	GGCC	3 cut(s)	138, 176, 466
BsoBI	CYCGRG	2 cut(s)	34, 267
Bsp1286I	GDGCHC	4 cut(s)	283, 341, 483, 528
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	6 cut(s)	112, 146, 294, 317, 331, 457
BspANI	GGCC	3 cut(s)	138, 176, 466
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	535
BspPI	GGATC	1 cut(s)	293
BsrBI	CCGCTC	2 cut(s)	148, 457
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	94, 566
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	285
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	138, 176, 466
BtsI	GCAGTG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	165, 457
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	2 cut(s)	164, 585
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	136, 464
Csp6I	GTAC	2 cut(s)	49, 237
CviAII	CATG	3 cut(s)	52, 440, 536
CviQI	GTAC	2 cut(s)	49, 237
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
EciI	GGCGGA	2 cut(s)	332, 346
Eco24I	GRGCYC	3 cut(s)	283, 341, 528
Eco88I	CYCGRG	2 cut(s)	34, 267
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	428
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	3 cut(s)	283, 341, 528
FaeI	CATG	3 cut(s)	55, 443, 539
FaiI	YATR	7 cut(s)	53, 207, 264, 441, 488, 537, 554
FaqI	GGGAC	3 cut(s)	103, 166, 181
FatI	CATG	3 cut(s)	51, 439, 535
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	436
FriOI	GRGCYC	3 cut(s)	283, 341, 528
FspBI	CTAG	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	138, 176, 466
Hin1II	CATG	3 cut(s)	55, 443, 539
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	5 cut(s)	155, 169, 179, 190, 404
Hpy166II	GTNNAC	2 cut(s)	13, 437
Hpy188I	TCNGA	3 cut(s)	285, 310, 343
Hpy188III	TCNNGA	2 cut(s)	34, 536
Hpy8I	GTNNAC	2 cut(s)	13, 437
HpyAV	CCTTC	4 cut(s)	270, 328, 378, 477
HpyCH4III	ACNGT	2 cut(s)	94, 566
HpyCH4V	TGCA	3 cut(s)	55, 414, 576
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	55, 443, 539
Kzo9I	GATC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	7 cut(s)	150, 158, 197, 415, 442, 447, 565
LweI	GCATC	2 cut(s)	29, 585
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	287
MbiI	CCGCTC	2 cut(s)	148, 457
MboI	GATC	1 cut(s)	285
MhlI	GDGCHC	4 cut(s)	283, 341, 483, 528
MluCI	AATT	7 cut(s)	116, 354, 377, 409, 415, 507, 529
MlyI	GAGTC	4 cut(s)	163, 188, 199, 413
MnlI	CCTC	8 cut(s)	30, 127, 219, 304, 352, 436, 469, 532
Mph1103I	ATGCAT	1 cut(s)	578
MseI	TTAA	5 cut(s)	45, 216, 231, 396, 516
MslI	CAYNNNNRTG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	1 cut(s)	463
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	3 cut(s)	55, 443, 539
NmeAIII	GCCGAG	2 cut(s)	202, 375
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	34
PagI	TCATGA	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	155
PleI	GAGTC	4 cut(s)	163, 187, 198, 412
PpsI	GAGTC	4 cut(s)	163, 187, 198, 412
Psp6I	CCWGG	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	136, 464
PstNI	CAGNNNCTG	2 cut(s)	164, 585
RsaI	GTAC	2 cut(s)	50, 238
RsaNI	GTAC	2 cut(s)	49, 237
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	5 cut(s)	45, 216, 231, 396, 516
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	2 cut(s)	136, 464
SchI	GAGTC	4 cut(s)	163, 188, 199, 413
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	4 cut(s)	283, 341, 483, 528
SetI	ASST	3 cut(s)	41, 230, 434
SfaNI	GCATC	2 cut(s)	29, 585
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	7 cut(s)	116, 354, 377, 409, 415, 507, 529
SsiI	CCGC	6 cut(s)	112, 146, 294, 317, 331, 457
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	2 cut(s)	94, 566
TaqI	TCGA	1 cut(s)	35
TasI	AATT	7 cut(s)	116, 354, 377, 409, 415, 507, 529
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	5 cut(s)	45, 216, 231, 396, 516
Tru9I	TTAA	5 cut(s)	45, 216, 231, 396, 516
TscAI	CASTG	2 cut(s)	165, 457
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	2 cut(s)	165, 457
XceI	RCATGY	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	436
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.