Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Reverse (-)

15254312 .. 15263343

Gene Structure 9032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG164800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2142 bp

ATGCAGGTCATTCCACCATCTCAATTCGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTACATTTGCCTTGAGAATGGAAGGAGCCTGCTTGATCTTCTGAAGGTGTGCAGGAATGCTTCTCTGCATACATTGGAGGCAACAATTCAGAAGTTCATCAATTCTTCACCAATAGACAAATATTTCACTTGTAAAAACTGTAGCGTGTCCTTTCCTCCTTATTGTGCTCTGGAAGATGGATCGCTTTGCTATTCTTGCATGGAGTCAAATAAACCTCACAGCCCATCTCAGGAATCTAGTAAAAATCTCAGAGCTTTGCTGCCTGCTTCGTTGTCAATGTCCCCGAAAAATGCTAAGTCCCCAAAAACTGCAACACCGAAGTCTGCAAGAAATGGAATTTTAAAGACTCCTAAAAGTACAATCTTAAGGCCCCCAAGAGGTGCTATCTCAAAGTCCCCCAAAAGTGCAATCTTAAATTCCACAAAGAGGGCAATCTCAAAGCTCCCAAAAAGTGCAATTTCAAAGTCTCCCAAGAGTGCTTCTCTTTGGAAGACAACTAAATTATCAACACCAGTTTCGATCTCAAGTCCATCAAAAAGTGCTTCTCCAATGCGCTCAGAATATAAGAGTGGATGGAAGATAACATCAAAGTCATCAAAATCAGTCCTGATCTCAAGGTCCCCTAGTGCTGCTTCAATGTATTTTTCTTCACAAAAGAAAAGTCAGTGGAGGATTACAACTAAAGATCAGCGCCTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGATGGAAGCGAAGTAGCATATTATGCCCGTGGACAGAAATTGCTAGTTGGTTATAAAAAGGGTTTTGGAATATTTTGCCGTTGCTGCAACACTGAGGTGAGCCCCTCGCAGTTTGAGGCTCATGCAGGTTGGGCTACACGCAGGAAACCCTATGCATACATATATACCTCCAATGGCGTGTCTCTCCACGAATTGGCCATATCTTTGTCAAGGGGTCGCAAGTATTCAGCCAAAGATAATGATGACTTGTGCATCATTTGTGCAGATGGCGGGAATCTTGTTCTTTGTGATGGATGCCCACGGGCCTTCCACAGAGATTGTGCATCTCTATCAGGTGTCCCTCGTGGTGACTGGTACTGTAAGTTTTGCCAGAATATGTTTCAAAGGGAGAAGTTTGTGGAACATAATGAAAATGCTGTTGCCGCTGGAAGGGTTGAAGGAATTGATCCTATAGAACAGATAACCCAAAGATGCATCCGTATTGTCAAAGACATTGAAGCTGAACTTACTGGATGTGTATTATGTAGGGGGTATGATTTTAGCAAATCGGGATTTGGTCCACGTACTATTATACTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAACTTGAAGGAATTGCCAAAGGGGAAATGGTTTTGTTGCACAGAATGCAATAAAATTCAATCTATTTTGCAAAAGTGTTTATCAAGGGGAGCTGAGGAGCTCCCAGATTCTCATTTGGATATTATGAAGAGAAAGCACGAGGAAAATGGTTTGGAGACTGTCAATGGTTTTGATGTCAGATGGAGACTTATTAGTGGCAAAATGGCTTCTCAGGAATCTCGGTTATTGCTTTCAAAGGCTGTTGCTATCTTCCATGATTGCTTTGATCCAATAATCGATGCAGAATCTGGGCGTGATCTCATTCCTGCCATGGTTTATGGAAGGAATGTTAGGAGCCAAGAATATGGGGGGATGTACTGTGCAATTCTTATGGTCAACTCAACTGTTGTATCAGCTGCTATTATTCGTGTTTTTGGTCAAGAAGTTGCTGAGCTACCTTTAGTTGCTACAAGTAGTGGTAACCATGGCAAGGGCTACTTCCAATCATTATTTTCCTGCATTGAGAAGCTGCTAGCTTTCTTGAGTGTGAAGAACCTTGTGCTGCCGGCTGCCCCAGAAGCAGAATCCATATGGACAGAAAAATTTGGTTTTACAAAGATAGATCCGGACCAGCTTATTAACTACAGGCGGACTTGCTACCAAATGATAACCTTCAAAGGAACATCAATGTTGCATAAAAAGGTTCCTGAATGTCGACTTGTAAATACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

713

Amino Acids

79.27

Weight (kDa)

9.32

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	2 - 39	3.7e-07	Tify domain binding domain
TDBD	PF16135	285 - 330	6e-14	Tify domain binding domain
PHD-1st_NSD	PF23011	345 - 389	3.2e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	349 - 388	6.1e-07	PHD-finger
IDM1_C	PF23209	564 - 703	2.6e-54	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	849
Acc36I	ACCTGC	1 cut(s)	911
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccI	GTMKAC	1 cut(s)	2122
AccIII	TCCGGA	1 cut(s)	2032
AciI	CCGC	3 cut(s)	1065, 1218, 2056
AclWI	GGATC	4 cut(s)	253, 1235, 1688, 2024
AcoI	YGGCCR	1 cut(s)	990
AcsI	RAATTY	4 cut(s)	402, 481, 1482, 2009
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	5 cut(s)	68, 424, 1151, 1360, 1784
AfiI	CCNNNNNNNGG	6 cut(s)	295, 443, 492, 988, 1224, 1897
AflII	CTTAAG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	1383, 1415
AleI	CACNNNNGTG	1 cut(s)	890
Alw21I	GWGCWC	2 cut(s)	235, 1530
Alw26I	GTCTC	4 cut(s)	537, 981, 1577, 1606
AlwI	GGATC	4 cut(s)	253, 1235, 1688, 2024
AlwNI	CAGNNNCTG	2 cut(s)	760, 1715
Aor13HI	TCCGGA	1 cut(s)	2032
AoxI	GGCC	3 cut(s)	434, 990, 1098
ApeKI	GCWGC	8 cut(s)	59, 325, 695, 879, 1823, 1936, 1969, 1976
ApoI	RAATTY	4 cut(s)	402, 481, 1482, 2009
ArsI	GACNNNNNNTTYG	2 cut(s)	712, 744
AspLEI	GCGC	2 cut(s)	621, 759
AspS9I	GGNCC	5 cut(s)	435, 684, 1098, 1352, 2035
AsuHPI	GGTGA	3 cut(s)	165, 904, 1154
AsuNHI	GCTAGC	1 cut(s)	1939
AvaII	GGWCC	3 cut(s)	684, 1352, 2035
BaeI	ACNNNNGTAYC	2 cut(s)	1800, 1833
BalI	TGGCCA	1 cut(s)	992
BanII	GRGCYC	2 cut(s)	899, 1530
BauI	CACGAG	2 cut(s)	1137, 1565
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	2 cut(s)	235, 1530
BbvCI	CCTCAGC	1 cut(s)	1521
BbvI	GCAGC	8 cut(s)	71, 312, 682, 866, 1810, 1923, 1956, 1963
BccI	CCATC	9 cut(s)	25, 236, 298, 604, 633, 791, 1055, 1079, 1602
BceAI	ACGGC	1 cut(s)	858
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BclI	TGATCA	1 cut(s)	1375
BcoDI	GTCTC	4 cut(s)	537, 981, 1577, 1606
BfaI	CTAG	4 cut(s)	303, 690, 839, 1940
BfmI	CTRYAG	3 cut(s)	205, 1245, 2050
BfoI	RGCGCY	1 cut(s)	760
BfrI	CTTAAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	911
BisI	GCNGC	9 cut(s)	60, 326, 696, 880, 1218, 1824, 1937, 1970, 1977
BlpI	GCTNAGC	1 cut(s)	1857
BlsI	GCNGC	9 cut(s)	61, 327, 697, 881, 1219, 1825, 1938, 1971, 1978
Bme18I	GGWCC	3 cut(s)	684, 1352, 2035
BmgT120I	GGNCC	5 cut(s)	435, 684, 1098, 1352, 2035
BmiI	GGNNCC	5 cut(s)	92, 437, 686, 1763, 2112
BmsI	GCATC	6 cut(s)	1056, 1079, 1127, 1256, 1278, 1696
BmtI	GCTAGC	1 cut(s)	1943
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	532, 564
Bpu10I	CCTNAGC	1 cut(s)	1521
Bpu1102I	GCTNAGC	1 cut(s)	1857
BpuEI	CTTGAG	4 cut(s)	98, 574, 664, 1969
Bsa29I	ATCGAT	1 cut(s)	1704
BsaAI	YACGTR	1 cut(s)	1358
BsaJI	CCNNGG	4 cut(s)	823, 1094, 1737, 1891
BsaWI	WCCGGW	1 cut(s)	2032
Bsc4I	CCNNNNNNNGG	6 cut(s)	295, 443, 492, 988, 1224, 1897
Bse118I	RCCGGY	1 cut(s)	1972
Bse1I	ACTGG	3 cut(s)	578, 1151, 1309
BseAI	TCCGGA	1 cut(s)	2032
BseCI	ATCGAT	1 cut(s)	1704
BseDI	CCNNGG	4 cut(s)	823, 1094, 1737, 1891
BseGI	GGATG	5 cut(s)	644, 1094, 1269, 1313, 1785
BseLI	CCNNNNNNNGG	6 cut(s)	295, 443, 492, 988, 1224, 1897
BseMII	CTCAG	7 cut(s)	308, 328, 636, 879, 1512, 1652, 1848
BseNI	ACTGG	3 cut(s)	578, 1151, 1309
BseRI	GAGGAG	1 cut(s)	1538
BseXI	GCAGC	8 cut(s)	71, 312, 682, 866, 1810, 1923, 1956, 1963
BsgI	GTGCAG	2 cut(s)	136, 1077
BshFI	GGCC	3 cut(s)	436, 992, 1100
BshVI	ATCGAT	1 cut(s)	1704
BsiHKAI	GWGCWC	2 cut(s)	235, 1530
BsiSI	CCGG	2 cut(s)	1973, 2033
BslFI	GGGAC	5 cut(s)	331, 349, 445, 670, 1118
BslI	CCNNNNNNNGG	6 cut(s)	295, 443, 492, 988, 1224, 1897
BsmAI	GTCTC	4 cut(s)	537, 981, 1577, 1606
BsmFI	GGGAC	5 cut(s)	331, 349, 445, 670, 1118
BsmI	GAATGC	2 cut(s)	127, 1478
BsnI	GGCC	3 cut(s)	436, 992, 1100
Bsp1286I	GDGCHC	3 cut(s)	235, 899, 1530
Bsp13I	TCCGGA	1 cut(s)	2032
Bsp1720I	GCTNAGC	1 cut(s)	1857
Bsp19I	CCATGG	2 cut(s)	1737, 1891
BspACI	CCGC	3 cut(s)	1065, 1218, 2056
BspANI	GGCC	3 cut(s)	436, 992, 1100
BspCNI	CTCAG	7 cut(s)	307, 327, 635, 880, 1513, 1651, 1849
BspDI	ATCGAT	1 cut(s)	1704
BspEI	TCCGGA	1 cut(s)	2032
BspLI	GGNNCC	5 cut(s)	92, 437, 686, 1763, 2112
BspMI	ACCTGC	1 cut(s)	911
BspOI	GCTAGC	1 cut(s)	1943
BspPI	GGATC	4 cut(s)	253, 1235, 1688, 2024
BspTI	CTTAAG	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	1972
BsrI	ACTGG	3 cut(s)	578, 1151, 1309
BssAI	RCCGGY	1 cut(s)	1972
BssECI	CCNNGG	4 cut(s)	823, 1094, 1737, 1891
BssSI	CACGAG	2 cut(s)	1137, 1565
BssT1I	CCWWGG	2 cut(s)	1737, 1891
Bst2BI	CACGAG	2 cut(s)	1137, 1565
Bst4CI	ACNGT	6 cut(s)	66, 206, 1154, 1588, 1787, 1813
Bst6I	CTCTTC	1 cut(s)	1550
BstAFI	CTTAAG	1 cut(s)	430
BstAPI	GCANNNNNTGC	2 cut(s)	818, 1473
BstBAI	YACGTR	1 cut(s)	1358
BstC8I	GCNNGC	5 cut(s)	95, 330, 761, 1941, 1974
BstDEI	CTNAG	8 cut(s)	294, 314, 360, 622, 888, 1521, 1638, 1857
BstDSI	CCRYGG	4 cut(s)	823, 1094, 1737, 1891
BstEII	GGTNACC	1 cut(s)	1886
BstF5I	GGATG	5 cut(s)	644, 1094, 1269, 1313, 1785
BstH2I	RGCGCY	1 cut(s)	760
BstHHI	GCGC	2 cut(s)	621, 759
BstMAI	GTCTC	4 cut(s)	537, 981, 1577, 1606
BstMWI	GCNNNNNNNGC	7 cut(s)	261, 818, 879, 926, 1217, 1473, 1985
BstPI	GGTNACC	1 cut(s)	1886
BstSFI	CTRYAG	3 cut(s)	205, 1245, 2050
BstV1I	GCAGC	8 cut(s)	71, 312, 682, 866, 1810, 1923, 1956, 1963
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	2029
BstXI	CCANNNNNNTGG	1 cut(s)	1772
BstYI	RGATCY	1 cut(s)	2029
Bsu15I	ATCGAT	1 cut(s)	1704
BsuRI	GGCC	3 cut(s)	436, 992, 1100
BsuTUI	ATCGAT	1 cut(s)	1704
BtgI	CCRYGG	4 cut(s)	823, 1094, 1737, 1891
BtsCI	GGATG	5 cut(s)	644, 1094, 1269, 1313, 1785
BtsIMutI	CAGTG	3 cut(s)	737, 885, 1385
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	5 cut(s)	95, 330, 761, 1941, 1974
CaiI	CAGNNNCTG	2 cut(s)	760, 1715
CfoI	GCGC	2 cut(s)	621, 759
Cfr10I	RCCGGY	1 cut(s)	1972
Cfr13I	GGNCC	5 cut(s)	435, 684, 1098, 1352, 2035
ClaI	ATCGAT	1 cut(s)	1704
Csp6I	GTAC	5 cut(s)	67, 423, 1150, 1359, 1783
CspCI	CAANNNNNGTGG	2 cut(s)	1094, 1129
CviAII	CATG	8 cut(s)	35, 265, 917, 1397, 1682, 1738, 1892, 2139
CviQI	GTAC	5 cut(s)	67, 423, 1150, 1359, 1783
DdeI	CTNAG	8 cut(s)	294, 314, 360, 622, 888, 1521, 1638, 1857
DraI	TTTAAA	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	990
Eam1104I	CTCTTC	1 cut(s)	1550
EarI	CTCTTC	1 cut(s)	1550
EciI	GGCGGA	1 cut(s)	2071
Ecl136II	GAGCTC	1 cut(s)	1528
Eco130I	CCWWGG	2 cut(s)	1737, 1891
Eco24I	GRGCYC	2 cut(s)	899, 1530
Eco47I	GGWCC	3 cut(s)	684, 1352, 2035
Eco53kI	GAGCTC	1 cut(s)	1528
Eco57I	CTGAAG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	1886
EcoICRI	GAGCTC	1 cut(s)	1528
EcoO109I	RGGNCCY	2 cut(s)	435, 684
EcoO65I	GGTNACC	1 cut(s)	1886
EcoT14I	CCWWGG	2 cut(s)	1737, 1891
EcoT22I	ATGCAT	2 cut(s)	952, 1271
EcoT38I	GRGCYC	2 cut(s)	899, 1530
ErhI	CCWWGG	2 cut(s)	1737, 1891
FaeI	CATG	8 cut(s)	38, 268, 920, 1400, 1685, 1741, 1895, 2142
FalI	AAGNNNNNCTT	4 cut(s)	1284, 1316, 1889, 1921
FaqI	GGGAC	5 cut(s)	331, 349, 445, 670, 1118
FatI	CATG	8 cut(s)	34, 264, 916, 1396, 1681, 1737, 1891, 2138
FauI	CCCGC	1 cut(s)	1058
FauNDI	CATATG	1 cut(s)	1997
FbaI	TGATCA	1 cut(s)	1375
FblI	GTMKAC	1 cut(s)	2122
Fnu4HI	GCNGC	9 cut(s)	60, 326, 696, 880, 1218, 1824, 1937, 1970, 1977
FokI	GGATG	5 cut(s)	651, 1101, 1256, 1320, 1792
FriOI	GRGCYC	2 cut(s)	899, 1530
Fsp4HI	GCNGC	9 cut(s)	60, 326, 696, 880, 1218, 1824, 1937, 1970, 1977
FspBI	CTAG	4 cut(s)	303, 690, 839, 1940
GlaI	GCGC	2 cut(s)	620, 758
GluI	GCNGC	9 cut(s)	60, 326, 696, 880, 1218, 1824, 1937, 1970, 1977
HaeII	RGCGCY	1 cut(s)	760
HaeIII	GGCC	3 cut(s)	436, 992, 1100
HapII	CCGG	2 cut(s)	1973, 2033
HhaI	GCGC	2 cut(s)	621, 759
Hin1II	CATG	8 cut(s)	38, 268, 920, 1400, 1685, 1741, 1895, 2142
Hin6I	GCGC	2 cut(s)	619, 757
HinP1I	GCGC	2 cut(s)	619, 757
HincII	GTYRAC	2 cut(s)	1804, 2123
HindII	GTYRAC	2 cut(s)	1804, 2123
HinfI	GANTC	9 cut(s)	31, 269, 299, 412, 1069, 1535, 1643, 1712, 1991
HpaII	CCGG	2 cut(s)	1973, 2033
HphI	GGTGA	3 cut(s)	165, 904, 1154
Hpy166II	GTNNAC	4 cut(s)	827, 1355, 1804, 2123
Hpy188I	TCNGA	5 cut(s)	108, 156, 317, 625, 1607
Hpy8I	GTNNAC	4 cut(s)	827, 1355, 1804, 2123
HpyCH4III	ACNGT	6 cut(s)	66, 206, 1154, 1588, 1787, 1813
HpyCH4IV	ACGT	1 cut(s)	1357
HpyF10VI	GCNNNNNNNGC	7 cut(s)	261, 818, 879, 926, 1217, 1473, 1985
HpyF3I	CTNAG	8 cut(s)	294, 314, 360, 622, 888, 1521, 1638, 1857
HpySE526I	ACGT	1 cut(s)	1357
Hsp92II	CATG	8 cut(s)	38, 268, 920, 1400, 1685, 1741, 1895, 2142
HspAI	GCGC	2 cut(s)	619, 757
Kpn2I	TCCGGA	1 cut(s)	2032
KroI	GCCGGC	1 cut(s)	1972
KroNI	GCCGGC	1 cut(s)	1974
Ksp22I	TGATCA	1 cut(s)	1375
LmnI	GCTCC	6 cut(s)	90, 513, 1517, 1525, 1533, 1761
Lsp1109I	GCAGC	8 cut(s)	71, 312, 682, 866, 1810, 1923, 1956, 1963
LweI	GCATC	6 cut(s)	1056, 1079, 1127, 1256, 1278, 1696
MaeI	CTAG	4 cut(s)	303, 690, 839, 1940
MaeII	ACGT	1 cut(s)	1357
MaeIII	GTNAC	2 cut(s)	1142, 1886
MflI	RGATCY	1 cut(s)	2029
MhlI	GDGCHC	3 cut(s)	235, 899, 1530
MlsI	TGGCCA	1 cut(s)	992
MluNI	TGGCCA	1 cut(s)	992
MlyI	GAGTC	2 cut(s)	278, 406
Mox20I	TGGCCA	1 cut(s)	992
Mph1103I	ATGCAT	2 cut(s)	952, 1271
MroI	TCCGGA	1 cut(s)	2032
MroNI	GCCGGC	1 cut(s)	1972
MscI	TGGCCA	1 cut(s)	992
MseI	TTAA	4 cut(s)	407, 431, 479, 2046
MslI	CAYNNNNRTG	1 cut(s)	890
Msp20I	TGGCCA	1 cut(s)	992
MspA1I	CMGCKG	2 cut(s)	1220, 1823
MspCI	CTTAAG	1 cut(s)	430
MspI	CCGG	2 cut(s)	1973, 2033
Mva1269I	GAATGC	2 cut(s)	127, 1478
MwoI	GCNNNNNNNGC	7 cut(s)	261, 818, 879, 926, 1217, 1473, 1985
NaeI	GCCGGC	1 cut(s)	1974
NcoI	CCATGG	2 cut(s)	1737, 1891
NdeI	CATATG	1 cut(s)	1997
NgoMIV	GCCGGC	1 cut(s)	1972
NheI	GCTAGC	1 cut(s)	1939
NlaIII	CATG	8 cut(s)	38, 268, 920, 1400, 1685, 1741, 1895, 2142
NlaIV	GGNNCC	5 cut(s)	92, 437, 686, 1763, 2112
NmuCI	GTSAC	1 cut(s)	1142
NsiI	ATGCAT	2 cut(s)	952, 1271
OliI	CACNNNNGTG	1 cut(s)	890
PctI	GAATGC	2 cut(s)	127, 1478
PdiI	GCCGGC	1 cut(s)	1974
PfeI	GAWTC	7 cut(s)	31, 299, 1069, 1535, 1643, 1712, 1991
PflMI	CCANNNNNTGG	1 cut(s)	988
PkrI	GCNGC	9 cut(s)	61, 327, 697, 881, 1219, 1825, 1938, 1971, 1978
PleI	GAGTC	2 cut(s)	277, 406
PpsI	GAGTC	2 cut(s)	277, 406
Ppu21I	YACGTR	1 cut(s)	1358
PpuMI	RGGWCCY	1 cut(s)	684
PsiI	TTATAA	1 cut(s)	849
Psp124BI	GAGCTC	1 cut(s)	1530
Psp5II	RGGWCCY	1 cut(s)	684
PspEI	GGTNACC	1 cut(s)	1886
PspN4I	GGNNCC	5 cut(s)	92, 437, 686, 1763, 2112
PspPI	GGNCC	5 cut(s)	435, 684, 1098, 1352, 2035
PspPPI	RGGWCCY	1 cut(s)	684
PstNI	CAGNNNCTG	2 cut(s)	760, 1715
PsuI	RGATCY	1 cut(s)	2029
PvuII	CAGCTG	1 cut(s)	1823
RsaI	GTAC	5 cut(s)	68, 424, 1151, 1360, 1784
RsaNI	GTAC	5 cut(s)	67, 423, 1150, 1359, 1783
RseI	CAYNNNNRTG	1 cut(s)	890
SacI	GAGCTC	1 cut(s)	1530
SalI	GTCGAC	1 cut(s)	2121
SaqAI	TTAA	4 cut(s)	407, 431, 479, 2046
SatI	GCNGC	9 cut(s)	60, 326, 696, 880, 1218, 1824, 1937, 1970, 1977
Sau96I	GGNCC	5 cut(s)	435, 684, 1098, 1352, 2035
SchI	GAGTC	2 cut(s)	278, 406
SduI	GDGCHC	3 cut(s)	235, 899, 1530
SfaNI	GCATC	6 cut(s)	1056, 1079, 1127, 1256, 1278, 1696
SfcI	CTRYAG	3 cut(s)	205, 1245, 2050
SinI	GGWCC	3 cut(s)	684, 1352, 2035
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	5 cut(s)	77, 430, 589, 679, 1948
SmoI	CTYRAG	5 cut(s)	77, 430, 589, 679, 1948
SsiI	CCGC	3 cut(s)	1065, 1218, 2056
SspI	AATATT	2 cut(s)	188, 867
SspMI	CTAG	4 cut(s)	303, 690, 839, 1940
SstI	GAGCTC	1 cut(s)	1530
StyI	CCWWGG	2 cut(s)	1737, 1891
TaaI	ACNGT	6 cut(s)	66, 206, 1154, 1588, 1787, 1813
TaiI	ACGT	1 cut(s)	1360
TaqI	TCGA	4 cut(s)	27, 584, 1704, 2122
TatI	WGTACW	3 cut(s)	66, 422, 1782
TauI	GCSGC	1 cut(s)	1220
TfiI	GAWTC	7 cut(s)	31, 299, 1069, 1535, 1643, 1712, 1991
Tru1I	TTAA	4 cut(s)	407, 431, 479, 2046
Tru9I	TTAA	4 cut(s)	407, 431, 479, 2046
TscAI	CASTG	3 cut(s)	737, 892, 1385
TseFI	GTSAC	1 cut(s)	1142
TseI	GCWGC	8 cut(s)	59, 325, 695, 879, 1823, 1936, 1969, 1976
Tsp45I	GTSAC	1 cut(s)	1142
TspDTI	ATGAA	4 cut(s)	23, 151, 1218, 1568
TspGWI	ACGGA	1 cut(s)	1262
TspRI	CASTG	3 cut(s)	737, 892, 1385
Van91I	CCANNNNNTGG	1 cut(s)	988
Vha464I	CTTAAG	1 cut(s)	430
VpaK11BI	GGWCC	3 cut(s)	684, 1352, 2035
XapI	RAATTY	4 cut(s)	402, 481, 1482, 2009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1452
XmiI	GTMKAC	1 cut(s)	2122
XspI	CTAG	4 cut(s)	303, 690, 839, 1940
Zsp2I	ATGCAT	2 cut(s)	952, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.