Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Reverse (-)

16076615 .. 16085352

Gene Structure 8738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3057 bp

ATGAAGCGAGATTTGGCTTCTGTATTGGAGGGCCAGTCTCAACTCGCCGATTCTGTGGTTGGGACTCGCGCCGAGGAGGCGAGCCCTACGCTTCGAGTTTATGAGAGACTGAACTCCAAGAGATTCAAAGGCGCTATTGTTGATGGTTTGATTGTGTATACGCGGGCCAGGAAGCCCGGGATCAATGGCCGGAGTGGTTTGTCGGAGGATGCGAAAGCCGCCGCCGCCGGGAGTAAGAGATTGGATGAGGTCAGAAATGCTCCGGGGTTTGAGAGTGATCAGCTGACTGAAGTTGTAGTTAGGGATGAAGGGAGTAGCGGTTTGGTGATACCTAGGAGTAGGGGTGGGAAGGGGAGTGAGATATGGATGCCTTTCGTTGGGGATCACGATATCGATGGGGAGTTGGTTGAAGTTGTAGTTAGAGAAGAGGGCAATTGTAGTTTCGAAATGAGTAGAAAGCGCTCTGCTGCCTTGAACGGCAGAGCTGCTAATAGTAGAAAGAGGGGAAAGGATTCACAACCAAGGTCATCGAGGAGGAAGCGCTTCACGCGATCCACATTGAGACCTAGTGTCGAGCCTCCGCTGGAAAATGGATCAGTGGCTGTGCTAGGATCAGAGGCTTTGCCTGGATCAGAGGCCGTGACAGGGTTAGAGATTGTGCCAGTTGAAGCAATTTCTGATGTAGAGGAGGAGAAACTAGTTGAAGTCAGTACACTGCTGTCAAATAGTAAGCTAGAATTGAAAATGTCGAAAAAGGTTGTGCTTGACAGGAAGCCTACTACTGTCAAGGAGCTGTTTGATACAGGCTTGGTTGATGGGGTAACAGTGATTTACATGGGTAGCAAGAAGGCGTTTGGTCTGCGGGGCACAATAAGAGACGGAGGGATTTTGTGTTCATGTATATCTTGCAATGGCTGCAGAGTCATTCCACCATCTCAATTTGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAATACATTTGCCTTGAGAATGGAAGGAGCCTGCTTGATCTTCTGAAGGTGTGCAGGAATGCTTCTCTGCATACATTGGAGGCAACAATTCAGAAGTTCATCAATTCTTCACCAATAGACAAATATTTCACTTGTAATAACTGTAGCGTCTCCTTTCCTCCTTATTGTGCTCTGGAAGATGGATCGCTTTGCTATTCTTGCATGGAGTCAAATAAACCTCACAGCCCATCTCAGGAATCTAGTAAAAATCTCAGAGCTTTGCTGCCTGCTTCGTTGTCAATGTCCCCGAAAAATGCCAAGTCCCCAAAAACTGCAACACCGAAGTCTGCAAGAAATGGAATTTTAACGACTCCTAAAAGTACAATCTTAAGGCCCCCAAGAGGTGCTATCTCAAAGTCCCCCAAAAGTGCAATCTTAAATTCCACAAAGAGGGCAATCTCAAAGCTCCCAAAAAGTGCAATTTCAAAGTCTCCCAAGAGTGCTTCTCTTTGGAAGACAACTAAATTATCAACACCAGTTTCGATCTCAAGTCCATCAAAAAGTGCTTCTCCAATGCGCTCAGAATATAAGAGTGGATGGAAGATAACATCAAAGTCATCAAAATCAGTCCTGATCTCAAGGTCCCCAAGTGCTGCTTCAATGTATTTTTCTTCACAAAAGAAAAGTCAGTGGAGGATTACAACTAAAGATCAGCGCCTGCATAAGTTGGTTTTTGAGGAAGGTGGATTGCCTGATGGAAGCGAAGTAGCATATTATGCCCGTGGACAGAAATTGCTAGTTGGTTATAAAAAGGGTTTTGGAATATTTTGCCGTTGCTGCAACACTGAGGTGAGCCCCTCGCAGTTTGAGGCTCATGCAGGTTGGGCTACACGCAGGAAACCCTATGCATACATATATACCTCCAATGGCGTGTCTCTCCACGAATTGGCCATATCTTTGTCAAGGGGTCGCAAGTATTCAGCCAAAGATAATGATGACTTGTGCATCATTTGTGCAGATGGCGGGAATCTTGTTCTTTGTGATGGATGCCCACGGGCCTTCCACAGAGATTGTGCATCTCTATCAGGTGTCCCTCGTGGTGACTGGTACTGTAAGTTTTGCCAGAATATGTTTCAAAGGGAGAAGTTTGTGGAACATAATGAAAATGCTGTTGCTGCTGGAAGGGTTGAAGGAATTGATCCTATAGAACAGATAACCCAAAGATGCATCCGTATTGTCAAAGACATTGAAGCTGAACTTACTGGATGTGTATTATGTAGGGGGTATGATTTTAGCAAATCGGGATTTGGTCCACGTACTATTATACTTTGTGATCAGTGTGAGAAGGAATATCATGTTGGCTGTTTGAAGAAACATAAAATGGCAAACTTGAAGGAATTGCCAAAGGGGAAATGGTTTTGTTGCACAGAATGCAATAAAATTCAATCTATTTTGCAAAAGTGTTTATCAAGGGGAGCTGAGGAGCTCCCAGATTCTCATTTGGATATTATGAAGAGAAAGCATGAGGAAAATGGTTTGGAGACTGTCAATGGTTTTGATGTCAGATGGAGACTTATTAGTGGCAAAATGGCTTCTCAGGAATCTCGGTTATTGCTTTCAAAGGCTGTTGCTATCTTCCATGATTGCTTTGATCCAATAATCGATGCAGAATCTGGCCGTGATCTCATTCCTGCCATGGTTTATGGAAGGAATGTTAGGAGCCAAGAATATGGGGGGATGTACTGTGCAATTCTTATGGTCAACTCAACTGTTGTATCAGCTGCTATTATTCGTGTTTTTGGTCAAGAAGTTGCTGAGCTTCCTTTAGTTGCTACAAGTAGTGGTAACCATGGCAAGGGCTACTTCCAATCATTATTTTCCTGCATTGAGAAGCTGCTAGCTTTCTTGAGTGTGAAGAACCTTGTGCTGCCGGCTGCCCCAGAAGCAGAATCCATATGGACAGAAAAATTTGGTTTTACAAAGATAGATCCGGACCAGCTTATTAACTACAGGCGGACTTGCTACCAAATGATAACCTTCAAAGGAACATCAATGTTGCATAAAAAGGTTCCTGAATGTCGACTTGTAAATACAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1018

Amino Acids

112.05

Weight (kDa)

9.26

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	289 - 344	3.7e-12	Tify domain binding domain
TDBD	PF16135	590 - 635	9.3e-14	Tify domain binding domain
PHD-1st_NSD	PF23011	650 - 694	5e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	654 - 693	9.2e-07	PHD-finger
IDM1_C	PF23209	869 - 1008	4.4e-54	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1764
Acc36I	ACCTGC	1 cut(s)	1826
AccB7I	CCANNNNNTGG	1 cut(s)	1903
AccI	GTMKAC	2 cut(s)	158, 3037
AccII	CGCG	3 cut(s)	69, 163, 550
AccIII	TCCGGA	1 cut(s)	2947
AciI	CCGC	9 cut(s)	163, 219, 222, 225, 318, 581, 862, 1980, 2971
AcoI	YGGCCR	3 cut(s)	187, 1905, 2632
AcsI	RAATTY	4 cut(s)	1317, 1396, 2397, 2924
AcuI	CTGAAG	2 cut(s)	309, 1043
AfaI	GTAC	5 cut(s)	712, 1339, 2066, 2275, 2699
AfeI	AGCGCT	2 cut(s)	461, 542
AfiI	CCNNNNNNNGG	8 cut(s)	228, 377, 645, 1210, 1358, 1407, 1903, 2812
AflII	CTTAAG	1 cut(s)	1345
AhdI	GACNNNNNGTC	1 cut(s)	569
AhlI	ACTAGT	1 cut(s)	697
AjnI	CCWGG	2 cut(s)	167, 625
AjuI	GAANNNNNNNTTGG	5 cut(s)	28, 1597, 1629, 2298, 2330
AleI	CACNNNNGTG	1 cut(s)	1805
AloI	GAACNNNNNNTCC	2 cut(s)	877, 909
Alw21I	GWGCWC	2 cut(s)	1150, 2445
Alw26I	GTCTC	9 cut(s)	42, 100, 556, 870, 1132, 1452, 1896, 2492, 2521
AlwNI	CAGNNNCTG	3 cut(s)	602, 1675, 2630
Ama87I	CYCGRG	1 cut(s)	176
Aor13HI	TCCGGA	1 cut(s)	2947
Aor51HI	AGCGCT	2 cut(s)	461, 542
AoxI	GGCC	8 cut(s)	31, 165, 187, 636, 1349, 1905, 2013, 2632
ApoI	RAATTY	4 cut(s)	1317, 1396, 2397, 2924
ArsI	GACNNNNNNTTYG	2 cut(s)	1627, 1659
Asp700I	GAANNNNTTC	2 cut(s)	511, 542
AspA2I	CCTAGG	1 cut(s)	332
AspLEI	GCGC	6 cut(s)	71, 134, 462, 543, 1536, 1674
AspS9I	GGNCC	7 cut(s)	31, 165, 1350, 1599, 2013, 2267, 2950
AsuC2I	CCSGG	4 cut(s)	177, 178, 229, 264
AsuHPI	GGTGA	4 cut(s)	337, 1080, 1819, 2069
AsuII	TTCGAA	1 cut(s)	444
AsuNHI	GCTAGC	1 cut(s)	2854
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	3 cut(s)	1599, 2267, 2950
AvrII	CCTAGG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	869
BaeI	ACNNNNGTAYC	2 cut(s)	2715, 2748
BalI	TGGCCA	1 cut(s)	1907
BanII	GRGCYC	3 cut(s)	86, 1814, 2445
BauI	CACGAG	1 cut(s)	2052
BbsI	GAAGAC	1 cut(s)	1478
Bbv12I	GWGCWC	2 cut(s)	1150, 2445
BbvCI	CCTCAGC	1 cut(s)	2436
BceAI	ACGGC	4 cut(s)	493, 623, 1773, 2619
BciT130I	CCWGG	2 cut(s)	169, 627
BclI	TGATCA	2 cut(s)	277, 2290
BcnI	CCSGG	4 cut(s)	177, 178, 229, 264
BcoDI	GTCTC	9 cut(s)	42, 100, 556, 870, 1132, 1452, 1896, 2492, 2521
BcuI	ACTAGT	1 cut(s)	697
BfaI	CTAG	8 cut(s)	333, 567, 608, 698, 734, 1218, 1754, 2855
BfmI	CTRYAG	4 cut(s)	916, 1120, 2160, 2965
BfoI	RGCGCY	4 cut(s)	135, 463, 544, 1675
BfrI	CTTAAG	1 cut(s)	1345
BfuAI	ACCTGC	1 cut(s)	1826
BglI	GCCNNNNNGGC	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	332
BlpI	GCTNAGC	1 cut(s)	2772
Bme1390I	CCNGG	6 cut(s)	169, 177, 178, 229, 264, 627
Bme18I	GGWCC	3 cut(s)	1599, 2267, 2950
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	7 cut(s)	31, 165, 1350, 1599, 2013, 2267, 2950
BmiI	GGNNCC	5 cut(s)	1007, 1352, 1601, 2678, 3027
BmrFI	CCNGG	6 cut(s)	169, 177, 178, 229, 264, 627
BmsI	GCATC	8 cut(s)	199, 357, 1971, 1994, 2042, 2171, 2193, 2611
BmtI	GCTAGC	1 cut(s)	2858
BpiI	GAAGAC	1 cut(s)	1478
BplI	GAGNNNNNCTC	2 cut(s)	1447, 1479
Bpu10I	CCTNAGC	1 cut(s)	2436
Bpu1102I	GCTNAGC	1 cut(s)	2772
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	4 cut(s)	1013, 1489, 1579, 2884
BpuMI	CCSGG	4 cut(s)	177, 178, 229, 264
Bsa29I	ATCGAT	2 cut(s)	393, 2619
BsaAI	YACGTR	1 cut(s)	2273
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	9 cut(s)	72, 176, 263, 332, 521, 1738, 2009, 2652, 2806
BsaWI	WCCGGW	1 cut(s)	2947
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 304, 328, 334, 358
Bsc4I	CCNNNNNNNGG	8 cut(s)	228, 377, 645, 1210, 1358, 1407, 1903, 2812
Bse118I	RCCGGY	1 cut(s)	2887
Bse1I	ACTGG	5 cut(s)	34, 662, 1493, 2066, 2224
Bse3DI	GCAATG	1 cut(s)	916
BseAI	TCCGGA	1 cut(s)	2947
BseBI	CCWGG	2 cut(s)	169, 627
BseCI	ATCGAT	2 cut(s)	393, 2619
BseDI	CCNNGG	9 cut(s)	72, 176, 263, 332, 521, 1738, 2009, 2652, 2806
BseGI	GGATG	9 cut(s)	214, 250, 310, 372, 1559, 2009, 2184, 2228, 2700
BseLI	CCNNNNNNNGG	8 cut(s)	228, 377, 645, 1210, 1358, 1407, 1903, 2812
BseMI	GCAATG	1 cut(s)	916
BseMII	CTCAG	7 cut(s)	1223, 1243, 1551, 1794, 2427, 2567, 2763
BseNI	ACTGG	5 cut(s)	34, 662, 1493, 2066, 2224
BseRI	GAGGAG	5 cut(s)	89, 547, 701, 704, 2453
BseSI	GKGCMC	1 cut(s)	869
BsgI	GTGCAG	2 cut(s)	1051, 1992
Bsh1236I	CGCG	3 cut(s)	69, 163, 550
BshFI	GGCC	8 cut(s)	33, 167, 189, 638, 1351, 1907, 2015, 2634
BshVI	ATCGAT	2 cut(s)	393, 2619
BsiHKAI	GWGCWC	2 cut(s)	1150, 2445
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	6 cut(s)	177, 190, 228, 263, 2888, 2948
BslFI	GGGAC	6 cut(s)	76, 1246, 1264, 1360, 1585, 2033
BslI	CCNNNNNNNGG	8 cut(s)	228, 377, 645, 1210, 1358, 1407, 1903, 2812
BsmAI	GTCTC	9 cut(s)	42, 100, 556, 870, 1132, 1452, 1896, 2492, 2521
BsmBI	CGTCTC	2 cut(s)	870, 1132
BsmFI	GGGAC	6 cut(s)	76, 1246, 1264, 1360, 1585, 2033
BsmI	GAATGC	2 cut(s)	1042, 2393
BsnI	GGCC	8 cut(s)	33, 167, 189, 638, 1351, 1907, 2015, 2634
Bso31I	GGTCTC	1 cut(s)	556
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	5 cut(s)	86, 869, 1150, 1814, 2445
Bsp13I	TCCGGA	1 cut(s)	2947
Bsp1720I	GCTNAGC	1 cut(s)	2772
Bsp19I	CCATGG	2 cut(s)	2652, 2806
BspACI	CCGC	9 cut(s)	163, 219, 222, 225, 318, 581, 862, 1980, 2971
BspANI	GGCC	8 cut(s)	33, 167, 189, 638, 1351, 1907, 2015, 2634
BspCNI	CTCAG	7 cut(s)	1222, 1242, 1550, 1795, 2428, 2566, 2764
BspDI	ATCGAT	2 cut(s)	393, 2619
BspEI	TCCGGA	1 cut(s)	2947
BspFNI	CGCG	3 cut(s)	69, 163, 550
BspLI	GGNNCC	5 cut(s)	1007, 1352, 1601, 2678, 3027
BspMAI	CTGCAG	1 cut(s)	920
BspMI	ACCTGC	1 cut(s)	1826
BspOI	GCTAGC	1 cut(s)	2858
BspT104I	TTCGAA	1 cut(s)	444
BspTI	CTTAAG	1 cut(s)	1345
BspTNI	GGTCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	916
BsrFI	RCCGGY	1 cut(s)	2887
BsrI	ACTGG	5 cut(s)	34, 662, 1493, 2066, 2224
BssAI	RCCGGY	1 cut(s)	2887
BssECI	CCNNGG	9 cut(s)	72, 176, 263, 332, 521, 1738, 2009, 2652, 2806
BssNAI	GTATAC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	2052
BssT1I	CCWWGG	4 cut(s)	332, 521, 2652, 2806
Bst1107I	GTATAC	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	2052
Bst2UI	CCWGG	2 cut(s)	169, 627
Bst4CI	ACNGT	7 cut(s)	784, 826, 1121, 2069, 2503, 2702, 2728
Bst6I	CTCTTC	2 cut(s)	420, 2465
BstAFI	CTTAAG	1 cut(s)	1345
BstAPI	GCANNNNNTGC	3 cut(s)	915, 1733, 2388
BstBAI	YACGTR	1 cut(s)	2273
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	7 cut(s)	82, 165, 1010, 1245, 1676, 2856, 2889
BstDEI	CTNAG	7 cut(s)	1209, 1229, 1537, 1803, 2436, 2553, 2772
BstDSI	CCRYGG	4 cut(s)	1738, 2009, 2652, 2806
BstEII	GGTNACC	1 cut(s)	2801
BstF5I	GGATG	9 cut(s)	214, 250, 310, 372, 1559, 2009, 2184, 2228, 2700
BstFNI	CGCG	3 cut(s)	69, 163, 550
BstH2I	RGCGCY	4 cut(s)	135, 463, 544, 1675
BstHHI	GCGC	6 cut(s)	71, 134, 462, 543, 1536, 1674
BstMAI	GTCTC	9 cut(s)	42, 100, 556, 870, 1132, 1452, 1896, 2492, 2521
BstNI	CCWGG	2 cut(s)	169, 627
BstPI	GGTNACC	1 cut(s)	2801
BstSCI	CCNGG	6 cut(s)	167, 175, 176, 227, 262, 625
BstSFI	CTRYAG	4 cut(s)	916, 1120, 2160, 2965
BstSLI	GKGCMC	1 cut(s)	869
BstUI	CGCG	3 cut(s)	69, 163, 550
BstV2I	GAAGAC	1 cut(s)	1478
BstX2I	RGATCY	1 cut(s)	2944
BstXI	CCANNNNNNTGG	1 cut(s)	2687
BstYI	RGATCY	1 cut(s)	2944
BstZ17I	GTATAC	1 cut(s)	159
Bsu15I	ATCGAT	2 cut(s)	393, 2619
BsuRI	GGCC	8 cut(s)	33, 167, 189, 638, 1351, 1907, 2015, 2634
BsuTUI	ATCGAT	2 cut(s)	393, 2619
BtgI	CCRYGG	4 cut(s)	1738, 2009, 2652, 2806
BtsCI	GGATG	9 cut(s)	214, 250, 310, 372, 1559, 2009, 2184, 2228, 2700
BtsI	GCAGTG	1 cut(s)	713
BtsIMutI	CAGTG	6 cut(s)	603, 713, 831, 1652, 1800, 2300
BveI	ACCTGC	1 cut(s)	1826
Cac8I	GCNNGC	7 cut(s)	82, 165, 1010, 1245, 1676, 2856, 2889
CaiI	CAGNNNCTG	3 cut(s)	602, 1675, 2630
CfoI	GCGC	6 cut(s)	71, 134, 462, 543, 1536, 1674
Cfr10I	RCCGGY	1 cut(s)	2887
Cfr13I	GGNCC	7 cut(s)	31, 165, 1350, 1599, 2013, 2267, 2950
Cfr9I	CCCGGG	1 cut(s)	176
ClaI	ATCGAT	2 cut(s)	393, 2619
CseI	GACGC	1 cut(s)	1114
Csp6I	GTAC	5 cut(s)	711, 1338, 2065, 2274, 2698
CspCI	CAANNNNNGTGG	2 cut(s)	2009, 2044
CviQI	GTAC	5 cut(s)	711, 1338, 2065, 2274, 2698
DdeI	CTNAG	7 cut(s)	1209, 1229, 1537, 1803, 2436, 2553, 2772
DriI	GACNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	3 cut(s)	187, 1905, 2632
Eam1104I	CTCTTC	2 cut(s)	420, 2465
Eam1105I	GACNNNNNGTC	1 cut(s)	569
EarI	CTCTTC	2 cut(s)	420, 2465
EciI	GGCGGA	1 cut(s)	2986
Ecl136II	GAGCTC	1 cut(s)	2443
Eco130I	CCWWGG	4 cut(s)	332, 521, 2652, 2806
Eco24I	GRGCYC	3 cut(s)	86, 1814, 2445
Eco31I	GGTCTC	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	3 cut(s)	1599, 2267, 2950
Eco47III	AGCGCT	2 cut(s)	461, 542
Eco53kI	GAGCTC	1 cut(s)	2443
Eco57I	CTGAAG	2 cut(s)	309, 1043
Eco88I	CYCGRG	1 cut(s)	176
Eco91I	GGTNACC	1 cut(s)	2801
EcoICRI	GAGCTC	1 cut(s)	2443
EcoO109I	RGGNCCY	2 cut(s)	1350, 1599
EcoO65I	GGTNACC	1 cut(s)	2801
EcoRII	CCWGG	2 cut(s)	167, 625
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	4 cut(s)	332, 521, 2652, 2806
EcoT22I	ATGCAT	2 cut(s)	1867, 2186
EcoT38I	GRGCYC	3 cut(s)	86, 1814, 2445
ErhI	CCWWGG	4 cut(s)	332, 521, 2652, 2806
Esp3I	CGTCTC	2 cut(s)	870, 1132
FalI	AAGNNNNNCTT	6 cut(s)	1597, 1629, 2199, 2231, 2804, 2836
FaqI	GGGAC	6 cut(s)	76, 1246, 1264, 1360, 1585, 2033
FauI	CCCGC	3 cut(s)	156, 855, 1973
FauNDI	CATATG	1 cut(s)	2912
FbaI	TGATCA	2 cut(s)	277, 2290
FblI	GTMKAC	2 cut(s)	158, 3037
FokI	GGATG	9 cut(s)	221, 257, 317, 379, 1566, 2016, 2171, 2235, 2707
FriOI	GRGCYC	3 cut(s)	86, 1814, 2445
FspBI	CTAG	8 cut(s)	333, 567, 608, 698, 734, 1218, 1754, 2855
GlaI	GCGC	6 cut(s)	70, 133, 461, 542, 1535, 1673
HaeII	RGCGCY	4 cut(s)	135, 463, 544, 1675
HaeIII	GGCC	8 cut(s)	33, 167, 189, 638, 1351, 1907, 2015, 2634
HapII	CCGG	6 cut(s)	177, 190, 228, 263, 2888, 2948
HgaI	GACGC	1 cut(s)	1114
HhaI	GCGC	6 cut(s)	71, 134, 462, 543, 1536, 1674
Hin6I	GCGC	6 cut(s)	69, 132, 460, 541, 1534, 1672
HinP1I	GCGC	6 cut(s)	69, 132, 460, 541, 1534, 1672
HincII	GTYRAC	2 cut(s)	2719, 3038
HindII	GTYRAC	2 cut(s)	2719, 3038
HpaII	CCGG	6 cut(s)	177, 190, 228, 263, 2888, 2948
HphI	GGTGA	4 cut(s)	337, 1080, 1819, 2069
Hpy166II	GTNNAC	6 cut(s)	159, 713, 1742, 2270, 2719, 3038
Hpy8I	GTNNAC	6 cut(s)	159, 713, 1742, 2270, 2719, 3038
HpyCH4III	ACNGT	7 cut(s)	784, 826, 1121, 2069, 2503, 2702, 2728
HpyCH4IV	ACGT	1 cut(s)	2272
HpyF3I	CTNAG	7 cut(s)	1209, 1229, 1537, 1803, 2436, 2553, 2772
HpySE526I	ACGT	1 cut(s)	2272
HspAI	GCGC	6 cut(s)	69, 132, 460, 541, 1534, 1672
Kpn2I	TCCGGA	1 cut(s)	2947
KroI	GCCGGC	1 cut(s)	2887
KroNI	GCCGGC	1 cut(s)	2889
Ksp22I	TGATCA	2 cut(s)	277, 2290
LmnI	GCTCC	8 cut(s)	265, 790, 1005, 1428, 2432, 2440, 2448, 2676
LweI	GCATC	8 cut(s)	199, 357, 1971, 1994, 2042, 2171, 2193, 2611
MaeI	CTAG	8 cut(s)	333, 567, 608, 698, 734, 1218, 1754, 2855
MaeII	ACGT	1 cut(s)	2272
MaeIII	GTNAC	4 cut(s)	640, 820, 2057, 2801
MfeI	CAATTG	1 cut(s)	433
MflI	RGATCY	1 cut(s)	2944
MhlI	GDGCHC	5 cut(s)	86, 869, 1150, 1814, 2445
MlsI	TGGCCA	1 cut(s)	1907
MluNI	TGGCCA	1 cut(s)	1907
MlyI	GAGTC	4 cut(s)	58, 930, 1193, 1321
MmeI	TCCRAC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	1907
Mph1103I	ATGCAT	2 cut(s)	1867, 2186
MroI	TCCGGA	1 cut(s)	2947
MroNI	GCCGGC	1 cut(s)	2887
MroXI	GAANNNNTTC	2 cut(s)	511, 542
MscI	TGGCCA	1 cut(s)	1907
MseI	TTAA	4 cut(s)	1322, 1346, 1394, 2961
MslI	CAYNNNNRTG	1 cut(s)	1805
Msp20I	TGGCCA	1 cut(s)	1907
MspA1I	CMGCKG	3 cut(s)	283, 583, 2738
MspCI	CTTAAG	1 cut(s)	1345
MspI	CCGG	6 cut(s)	177, 190, 228, 263, 2888, 2948
MspR9I	CCNGG	6 cut(s)	169, 177, 178, 229, 264, 627
MunI	CAATTG	1 cut(s)	433
Mva1269I	GAATGC	2 cut(s)	1042, 2393
MvaI	CCWGG	2 cut(s)	169, 627
MvnI	CGCG	3 cut(s)	69, 163, 550
NaeI	GCCGGC	1 cut(s)	2889
NciI	CCSGG	4 cut(s)	177, 178, 229, 264
NcoI	CCATGG	2 cut(s)	2652, 2806
NdeI	CATATG	1 cut(s)	2912
NgoMIV	GCCGGC	1 cut(s)	2887
NheI	GCTAGC	1 cut(s)	2854
NlaIV	GGNNCC	5 cut(s)	1007, 1352, 1601, 2678, 3027
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	2 cut(s)	640, 2057
NsiI	ATGCAT	2 cut(s)	1867, 2186
NspV	TTCGAA	1 cut(s)	444
OliI	CACNNNNGTG	1 cut(s)	1805
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	2 cut(s)	1042, 2393
PdiI	GCCGGC	1 cut(s)	2889
PdmI	GAANNNNTTC	2 cut(s)	511, 542
PflMI	CCANNNNNTGG	1 cut(s)	1903
PleI	GAGTC	4 cut(s)	58, 929, 1192, 1321
PpsI	GAGTC	4 cut(s)	58, 929, 1192, 1321
Ppu21I	YACGTR	1 cut(s)	2273
PpuMI	RGGWCCY	1 cut(s)	1599
PsiI	TTATAA	1 cut(s)	1764
Psp124BI	GAGCTC	1 cut(s)	2445
Psp5II	RGGWCCY	1 cut(s)	1599
Psp6I	CCWGG	2 cut(s)	167, 625
PspEI	GGTNACC	1 cut(s)	2801
PspGI	CCWGG	2 cut(s)	167, 625
PspN4I	GGNNCC	5 cut(s)	1007, 1352, 1601, 2678, 3027
PspPI	GGNCC	7 cut(s)	31, 165, 1350, 1599, 2013, 2267, 2950
PspPPI	RGGWCCY	1 cut(s)	1599
PstI	CTGCAG	1 cut(s)	920
PstNI	CAGNNNCTG	3 cut(s)	602, 1675, 2630
PsuI	RGATCY	1 cut(s)	2944
PvuII	CAGCTG	2 cut(s)	283, 2738
RsaI	GTAC	5 cut(s)	712, 1339, 2066, 2275, 2699
RsaNI	GTAC	5 cut(s)	711, 1338, 2065, 2274, 2698
RseI	CAYNNNNRTG	1 cut(s)	1805
SacI	GAGCTC	1 cut(s)	2445
SalI	GTCGAC	1 cut(s)	3036
SaqAI	TTAA	4 cut(s)	1322, 1346, 1394, 2961
Sau96I	GGNCC	7 cut(s)	31, 165, 1350, 1599, 2013, 2267, 2950
SchI	GAGTC	4 cut(s)	58, 930, 1193, 1321
ScrFI	CCNGG	6 cut(s)	169, 177, 178, 229, 264, 627
SduI	GDGCHC	5 cut(s)	86, 869, 1150, 1814, 2445
SfaNI	GCATC	8 cut(s)	199, 357, 1971, 1994, 2042, 2171, 2193, 2611
SfcI	CTRYAG	4 cut(s)	916, 1120, 2160, 2965
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	3 cut(s)	1599, 2267, 2950
SmaI	CCCGGG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	1805
SmlI	CTYRAG	5 cut(s)	992, 1345, 1504, 1594, 2863
SmoI	CTYRAG	5 cut(s)	992, 1345, 1504, 1594, 2863
SpeI	ACTAGT	1 cut(s)	697
SsiI	CCGC	9 cut(s)	163, 219, 222, 225, 318, 581, 862, 1980, 2971
SspI	AATATT	2 cut(s)	1103, 1782
SspMI	CTAG	8 cut(s)	333, 567, 608, 698, 734, 1218, 1754, 2855
SstI	GAGCTC	1 cut(s)	2445
StyD4I	CCNGG	6 cut(s)	167, 175, 176, 227, 262, 625
StyI	CCWWGG	4 cut(s)	332, 521, 2652, 2806
TaaI	ACNGT	7 cut(s)	784, 826, 1121, 2069, 2503, 2702, 2728
TaiI	ACGT	1 cut(s)	2275
TaqI	TCGA	9 cut(s)	94, 393, 444, 530, 573, 749, 1499, 2619, 3037
TatI	WGTACW	3 cut(s)	710, 1337, 2697
TauI	GCSGC	3 cut(s)	221, 224, 227
Tru1I	TTAA	4 cut(s)	1322, 1346, 1394, 2961
Tru9I	TTAA	4 cut(s)	1322, 1346, 1394, 2961
TscAI	CASTG	6 cut(s)	603, 720, 831, 1652, 1807, 2300
TseFI	GTSAC	2 cut(s)	640, 2057
Tsp45I	GTSAC	2 cut(s)	640, 2057
TspDTI	ATGAA	7 cut(s)	17, 321, 885, 938, 1066, 2133, 2483
TspGWI	ACGGA	2 cut(s)	894, 2177
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	6 cut(s)	603, 720, 831, 1652, 1807, 2300
Van91I	CCANNNNNTGG	1 cut(s)	1903
Vha464I	CTTAAG	1 cut(s)	1345
VpaK11BI	GGWCC	3 cut(s)	1599, 2267, 2950
XapI	RAATTY	4 cut(s)	1317, 1396, 2397, 2924
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2367
XmaI	CCCGGG	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	332
XmiI	GTMKAC	2 cut(s)	158, 3037
XmnI	GAANNNNTTC	2 cut(s)	511, 542
XspI	CTAG	8 cut(s)	333, 567, 608, 698, 734, 1218, 1754, 2855
Zsp2I	ATGCAT	2 cut(s)	1867, 2186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.