FvH4_6g19430
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009699
Physical Location & Seq
Forward (+)
12970642 .. 12972603
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19430.t1

Sequence Viewer

Length: 885 bp
ATGGAAGATTTTCCACCTGGGTTTAGATTCTACCCAACAGAGGAGGAACTGGTTTCATTTTATTTGCCCCACAAGCTAGATGGAACGAGGAAGGACGTGAACCGGGTTATGGACCGGATCATACCTGTGCTTGACATATACGAGTTTAATCCTTGGGATCTCCCACGAAATTCAGGAGAAATATGCCATGGAGATCAAGAGCAGTGGTTCTTCTTCATCCCGAGACAAGAGAGTGAAGCACGGGGAGGGAGACCGAAACGACTCACTACTACTGGATATTGGAAGGCAACTGGTTCTCCAAGTTATGTTTACTCTTCCAGTTCCAGCAGTACTAATCATGGTGCCATCGGCCTCAAAAGAACTATGGTCTTCTACACTGGTAGAGCTCCCAAAGGAAGCAAAACCGAGTGGAAGATGAATGAGTACAAAGCCATTGAAGAAGATGATCAACTTCATGCACCTTCTTCATCATCAAACGCCACTCCTGCTCCTGCGTTAAGGCAAGAATTCAGTTTATGCCGAGTCTACAAGAAATCGAAATGCTTGAGGGCATTTGACAGACGACCTTCAGGCACCGGTGATATCATGCGCAGACCTACGGTTACAGTTCAATTACCAGCTCTGCCGCAGTTAGGTACAGATCATCATAACGAGGGTTCTACTTATCCAACAGCGATTTCGCATGCTCAGAACATCATCCCAGCTGCTCCTAATTCATATAATGTGGAAATGGAGAGAATAAGTACTTTAAGCTCGTCTGGGAGTTCATCCTCAGGAGACCATGGCCAACCCTCTCAATCTGGACAGAGCACTGGAAGCTTGCCAGTGGCGGTTGACAACGGTGAACCTCTGTGGGAACTGGACCAACTGGATTGGTTTAATTAA

Protein Analysis

295

Amino Acids

32.9

Weight (kDa)

6.08

Isoelectric Point (pI)

62.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 143 7.4e-37 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 590
AccB1I GGYRCC 2 cut(s) 341, 572
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 626, 830
AclWI GGATC 2 cut(s) 125, 165
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 2 cut(s) 169, 506
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 4 cut(s) 331, 425, 637, 745
AfiI CCNNNNNNNGG 3 cut(s) 40, 109, 632
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 2 cut(s) 437, 611
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 661, 693
AluBI AGCT 6 cut(s) 76, 386, 620, 704, 753, 819
AluI AGCT 6 cut(s) 76, 386, 620, 704, 753, 819
Alw21I GWGCWC 2 cut(s) 388, 812
Alw26I GTCTC 3 cut(s) 217, 244, 771
AlwI GGATC 2 cut(s) 125, 165
Ama87I CYCGRG 1 cut(s) 220
AoxI GGCC 2 cut(s) 349, 784
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 2 cut(s) 169, 506
AsiGI ACCGGT 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 112, 862
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 590, 854
AvaI CYCGRG 1 cut(s) 220
AvaII GGWCC 2 cut(s) 112, 862
AxyI CCTNAGG 1 cut(s) 772
BalI TGGCCA 1 cut(s) 786
BanI GGYRCC 2 cut(s) 341, 572
BanII GRGCYC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 361
Bbv12I GWGCWC 2 cut(s) 388, 812
BbvI GCAGC 1 cut(s) 691
BccI CCATC 2 cut(s) 74, 353
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 3 cut(s) 217, 244, 771
BfaI CTAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 626, 705
BlsI GCNGC 2 cut(s) 627, 706
BmcAI AGTACT 2 cut(s) 331, 745
Bme1390I CCNGG 2 cut(s) 18, 104
Bme18I GGWCC 2 cut(s) 112, 862
BmeT110I CYCGRG 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 112, 862
BmiI GGNNCC 2 cut(s) 343, 574
BmrFI CCNGG 2 cut(s) 18, 104
BpiI GAAGAC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 565
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 2 cut(s) 244, 771
BsaJI CCNNGG 4 cut(s) 17, 152, 187, 781
BsaWI WCCGGW 2 cut(s) 114, 575
BsaXI ACNNNNNCTCC 4 cut(s) 280, 310, 472, 502
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 109, 632
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 9 cut(s) 54, 277, 295, 318, 382, 817, 824, 864, 873
Bse21I CCTNAGG 1 cut(s) 772
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 4 cut(s) 17, 152, 187, 781
BseGI GGATG 3 cut(s) 216, 696, 767
BseLI CCNNNNNNNGG 3 cut(s) 40, 109, 632
BseMII CTCAG 2 cut(s) 701, 786
BseNI ACTGG 9 cut(s) 54, 277, 295, 318, 382, 817, 824, 864, 873
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 691
BseYI CCCAGC 1 cut(s) 700
BshFI GGCC 2 cut(s) 351, 786
BshNI GGYRCC 2 cut(s) 341, 572
BshTI ACCGGT 1 cut(s) 575
BsiHKAI GWGCWC 2 cut(s) 388, 812
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 3 cut(s) 103, 115, 576
BslI CCNNNNNNNGG 3 cut(s) 40, 109, 632
BsmAI GTCTC 3 cut(s) 217, 244, 771
BsnI GGCC 2 cut(s) 351, 786
Bso31I GGTCTC 2 cut(s) 244, 771
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 388, 812
Bsp143I GATC 5 cut(s) 117, 157, 193, 445, 640
Bsp19I CCATGG 2 cut(s) 187, 781
BspACI CCGC 2 cut(s) 626, 830
BspANI GGCC 2 cut(s) 351, 786
BspCNI CTCAG 2 cut(s) 700, 785
BspLI GGNNCC 2 cut(s) 343, 574
BspPI GGATC 2 cut(s) 125, 165
BspT107I GGYRCC 2 cut(s) 341, 572
BspTNI GGTCTC 2 cut(s) 244, 771
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 9 cut(s) 54, 277, 295, 318, 382, 817, 824, 864, 873
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 4 cut(s) 17, 152, 187, 781
BssMI GATC 5 cut(s) 117, 157, 193, 445, 640
BssT1I CCWWGG 3 cut(s) 152, 187, 781
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 601, 607, 842
Bst6I CTCTTC 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 684, 821
BstDEI CTNAG 2 cut(s) 687, 772
BstDSI CCRYGG 2 cut(s) 187, 781
BstF5I GGATG 3 cut(s) 216, 696, 767
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 5 cut(s) 120, 160, 196, 448, 643
BstMAI GTCTC 3 cut(s) 217, 244, 771
BstMBI GATC 5 cut(s) 117, 157, 193, 445, 640
BstMWI GCNNNNNNNGC 3 cut(s) 73, 485, 816
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 2 cut(s) 16, 102
BstV1I GCAGC 1 cut(s) 691
BstV2I GAAGAC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 772
BsuRI GGCC 2 cut(s) 351, 786
BtgI CCRYGG 2 cut(s) 187, 781
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 216, 696, 767
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 4 cut(s) 209, 375, 810, 831
Cac8I GCNNGC 2 cut(s) 684, 821
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 2 cut(s) 112, 862
Csp6I GTAC 4 cut(s) 330, 424, 636, 744
CspAI ACCGGT 1 cut(s) 575
CspCI CAANNNNNGTGG 2 cut(s) 185, 220
CviAII CATG 6 cut(s) 188, 338, 455, 586, 683, 782
CviJI RGCY 9 cut(s) 76, 351, 386, 431, 620, 704, 753, 786, 819
CviKI_1 RGCY 9 cut(s) 76, 351, 386, 431, 620, 704, 753, 786, 819
CviQI GTAC 4 cut(s) 330, 424, 636, 744
DdeI CTNAG 2 cut(s) 687, 772
DpnI GATC 5 cut(s) 119, 159, 195, 447, 642
DpnII GATC 5 cut(s) 117, 157, 193, 445, 640
EaeI YGGCCR 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 3 cut(s) 152, 187, 781
Eco24I GRGCYC 1 cut(s) 388
Eco31I GGTCTC 2 cut(s) 244, 771
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 112, 862
Eco53kI GAGCTC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 772
Eco88I CYCGRG 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 386
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 3 cut(s) 152, 187, 781
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 3 cut(s) 152, 187, 781
FaeI CATG 6 cut(s) 191, 341, 458, 589, 686, 785
FatI CATG 6 cut(s) 187, 337, 454, 585, 682, 781
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 626, 705
FokI GGATG 3 cut(s) 203, 683, 754
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 2 cut(s) 626, 705
FspBI CTAG 1 cut(s) 77
FspI TGCGCA 1 cut(s) 590
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 626, 705
GsaI CCCAGC 1 cut(s) 704
HaeIII GGCC 2 cut(s) 351, 786
HapII CCGG 3 cut(s) 103, 115, 576
HhaI GCGC 1 cut(s) 591
Hin1II CATG 6 cut(s) 191, 341, 458, 589, 686, 785
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 3 cut(s) 27, 261, 522
HpaII CCGG 3 cut(s) 103, 115, 576
HphI GGTGA 2 cut(s) 590, 854
Hpy166II GTNNAC 5 cut(s) 100, 310, 526, 835, 845
Hpy188I TCNGA 1 cut(s) 690
Hpy188III TCNNGA 5 cut(s) 174, 197, 220, 774, 801
Hpy8I GTNNAC 5 cut(s) 100, 310, 526, 835, 845
HpyAV CCTTC 4 cut(s) 85, 277, 471, 576
HpyCH4III ACNGT 3 cut(s) 601, 607, 842
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 485, 816
HpyF3I CTNAG 2 cut(s) 687, 772
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 6 cut(s) 191, 341, 458, 589, 686, 785
HspAI GCGC 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 5 cut(s) 117, 157, 193, 445, 640
LmnI GCTCC 3 cut(s) 391, 493, 712
Lsp1109I GCAGC 1 cut(s) 691
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 601
MalI GATC 5 cut(s) 119, 159, 195, 447, 642
MboI GATC 5 cut(s) 117, 157, 193, 445, 640
MboII GAAGA 9 cut(s) 17, 202, 205, 306, 361, 424, 449, 452, 456
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 388, 812
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 5 cut(s) 169, 506, 611, 712, 880
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 2 cut(s) 255, 531
MmeI TCCRAC 1 cut(s) 692
Mox20I TGGCCA 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 786
MseI TTAA 5 cut(s) 147, 497, 749, 879, 883
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 3 cut(s) 103, 115, 576
MspR9I CCNGG 2 cut(s) 18, 104
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 3 cut(s) 73, 485, 816
NciI CCSGG 1 cut(s) 104
NcoI CCATGG 2 cut(s) 187, 781
NdeII GATC 5 cut(s) 117, 157, 193, 445, 640
NlaIII CATG 6 cut(s) 191, 341, 458, 589, 686, 785
NlaIV GGNNCC 2 cut(s) 343, 574
NmeAIII GCCGAG 1 cut(s) 545
NsbI TGCGCA 1 cut(s) 590
NspI RCATGY 1 cut(s) 686
PacI TTAATTAA 1 cut(s) 883
PaeI GCATGC 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 27
PinAI ACCGGT 1 cut(s) 575
PkrI GCNGC 2 cut(s) 627, 706
PleI GAGTC 2 cut(s) 255, 530
PpsI GAGTC 2 cut(s) 255, 530
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 343, 574
PspPI GGNCC 2 cut(s) 112, 862
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 704
RsaI GTAC 4 cut(s) 331, 425, 637, 745
RsaNI GTAC 4 cut(s) 330, 424, 636, 744
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 5 cut(s) 147, 497, 749, 879, 883
SatI GCNGC 2 cut(s) 626, 705
Sau3AI GATC 5 cut(s) 117, 157, 193, 445, 640
Sau96I GGNCC 2 cut(s) 112, 862
ScaI AGTACT 2 cut(s) 331, 745
SchI GAGTC 2 cut(s) 255, 531
ScrFI CCNGG 2 cut(s) 18, 104
SduI GDGCHC 2 cut(s) 388, 812
SgrAI CRCCGGYG 1 cut(s) 575
SinI GGWCC 2 cut(s) 112, 862
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
SphI GCATGC 1 cut(s) 686
Sse9I AATT 5 cut(s) 169, 506, 611, 712, 880
SsiI CCGC 2 cut(s) 626, 830
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 16, 102
StyI CCWWGG 3 cut(s) 152, 187, 781
TaaI ACNGT 3 cut(s) 601, 607, 842
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 536
TaqII GACCGA 1 cut(s) 268
TasI AATT 5 cut(s) 169, 506, 611, 712, 880
TatI WGTACW 3 cut(s) 329, 423, 743
TauI GCSGC 1 cut(s) 628
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 5 cut(s) 147, 497, 749, 879, 883
Tru9I TTAA 5 cut(s) 147, 497, 749, 879, 883
TscAI CASTG 4 cut(s) 209, 382, 817, 831
TseI GCWGC 1 cut(s) 704
TspDTI ATGAA 7 cut(s) 45, 205, 431, 443, 456, 705, 756
TspRI CASTG 4 cut(s) 209, 382, 817, 831
VpaK11BI GGWCC 2 cut(s) 112, 862
XapI RAATTY 2 cut(s) 169, 506
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 2 cut(s) 331, 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.