Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009699

Physical Location & Seq

Genomic Coordinates Forward (+)

3262786 .. 3264615

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1030200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGGATTTACCACCTGGATTTAGATTCTCTCCAACAGAGGAAGAGCTGATTTCGTTTTACCTGCAGAAAAAACTTGATGGGAGGAGTGAGGACTTGAACCGAGTTGTGGATCGAATCATACCCGTTGTCTACATTTACGAGTTTAATCCATGGGAACTCCCACAGGCTGCCGGAGAGGCGATCCATGGAGATCCGGAGCAGTGGTTCTTTTTCATCCCAAGACAAGAAAGTGAAGCTCGAGGAGGGAGACCGAGACGACTCACAACAACTGGGTATTGGAAAGCAACAGGATCTCCAAGCACTGTTTACTCTTCCAATTCCAATCACTATCGTGCCATCGGCCTCAAAAGAACCATGGTTTTCTATACTGGCAGAGCTCCCCATGGAAAGAAAACGGAGTGGAAGATGAATGAATACAAAGCCATTGAAATTCATGCAGATGATAATAATCAACAATCAATGGCCGCCTCCTCATCAAACCCTAGTACTCCTTCTACTCCCACGTTAAGGCAAGAATTCAGCTTATGCCGAGTATACAAGAAATCGAAATGCCTTAGGGCATTTGACAGGCGACCTCCAGGGATTGAGATCACAAGAAACCCTAACTTAAACATTCAAGCAGCTCCTGCTCAGACTGCAGATCATCTGGATCAGGGTTTGACAACATCGAATAGGAACCCTCAGAATATGGAAGGGAGAACAAACTCAAGCTCACCGGAGAGTTCATCCTCAGGAGGACATGGCTCTCAATCCTCTCAACCAGAACAAAGTGGGACTTTGCCAATGGCCGTTGATAATGAAGCTATTTGGGATTTGGATCAAATGATAAATTTTTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

282

Amino Acids

31.66

Weight (kDa)

6.33

Isoelectric Point (pI)

65.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 141	1.2e-36	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19430
malus_domestica	MD12G1030200.v1.1 MD12G1030500.v1.1 MD14G1030700.v1.1 MD14G1030800.v1.1 MD14G1030900.v1.1 MD14G1031000.v1.1
prunus_persica	Prupe.7G102000_v2.0.a1
pyrus_communis	pycom12g02810 pycom12g02820 pycom14g02790
rosa_chinensis	RchiOBHm_Chr3g0474741
rosa_laevigata	RLG00000023900
rosa_multiflora	Rmu_co8258885.1_g000001 Rmu_sc0007062.1_g000020
rosa_roxburghii	Rroxscaffold_6G00406890
rosa_rugosa	Rorug03G0143000
rosa_samantha	Rh3AG193300 Rh3BG223100 Rh3CG217900 Rh3DG219100
rosa_wichuraiana	Rw3G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	132, 537
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	6 cut(s)	120, 178, 188, 301, 660, 828
AcoI	YGGCCR	2 cut(s)	465, 789
AcsI	RAATTY	3 cut(s)	432, 518, 832
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	109, 510
AgsI	TTSAA	3 cut(s)	100, 431, 620
AjnI	CCWGG	2 cut(s)	16, 580
AleI	CACNNNNGTG	1 cut(s)	333
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	7 cut(s)	49, 239, 380, 525, 626, 714, 806
AluI	AGCT	7 cut(s)	49, 239, 380, 525, 626, 714, 806
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	244, 250
AlwI	GGATC	6 cut(s)	120, 178, 188, 301, 660, 828
AlwNI	CAGNNNCTG	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	343, 465, 789
ApeKI	GCWGC	2 cut(s)	170, 623
ApoI	RAATTY	3 cut(s)	432, 518, 832
AsuHPI	GGTGA	1 cut(s)	708
AvaI	CYCGRG	1 cut(s)	240
AxyI	CCTNAGG	2 cut(s)	557, 733
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	157, 635
BccI	CCATC	2 cut(s)	74, 347
BceAI	ACGGC	1 cut(s)	776
BciT130I	CCWGG	2 cut(s)	18, 582
BcoDI	GTCTC	2 cut(s)	244, 250
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	65, 639
BfuAI	ACCTGC	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	171, 468, 624
BlsI	GCNGC	3 cut(s)	172, 469, 625
BmcAI	AGTACT	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	18, 582
BmeT110I	CYCGRG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	680
BmrFI	CCNGG	2 cut(s)	18, 582
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	694
BsaBI	GATNNNNATC	3 cut(s)	450, 590, 819
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	5 cut(s)	152, 187, 357, 385, 581
BsaWI	WCCGGW	2 cut(s)	196, 718
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 510
Bse1I	ACTGG	2 cut(s)	277, 376
Bse21I	CCTNAGG	2 cut(s)	557, 733
Bse8I	GATNNNNATC	3 cut(s)	450, 590, 819
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	18, 582
BseDI	CCNNGG	5 cut(s)	152, 187, 357, 385, 581
BseGI	GGATG	2 cut(s)	216, 728
BseJI	GATNNNNATC	3 cut(s)	450, 590, 819
BseLI	CCNNNNNNNGG	2 cut(s)	109, 510
BseMII	CTCAG	3 cut(s)	647, 698, 747
BseNI	ACTGG	2 cut(s)	277, 376
BseRI	GAGGAG	3 cut(s)	100, 258, 463
BseXI	GCAGC	2 cut(s)	157, 635
BshFI	GGCC	3 cut(s)	345, 467, 791
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	3 cut(s)	174, 197, 719
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	2 cut(s)	109, 510
BsmAI	GTCTC	2 cut(s)	244, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	3 cut(s)	345, 467, 791
Bso31I	GGTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
Bsp19I	CCATGG	4 cut(s)	152, 187, 357, 385
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	3 cut(s)	345, 467, 791
BspCNI	CTCAG	3 cut(s)	646, 697, 746
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	680
BspMAI	CTGCAG	2 cut(s)	69, 643
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	6 cut(s)	120, 178, 188, 301, 660, 828
BspQI	GCTCTTC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	277, 376
BssECI	CCNNGG	5 cut(s)	152, 187, 357, 385, 581
BssMI	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
BssNAI	GTATAC	1 cut(s)	538
BssT1I	CCWWGG	4 cut(s)	152, 187, 357, 385
Bst1107I	GTATAC	1 cut(s)	538
Bst2UI	CCWGG	2 cut(s)	18, 582
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	39, 319
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstDEI	CTNAG	4 cut(s)	557, 633, 684, 733
BstDSI	CCRYGG	4 cut(s)	152, 187, 357, 385
BstF5I	GGATG	2 cut(s)	216, 728
BstKTI	GATC	8 cut(s)	115, 186, 196, 296, 594, 646, 655, 823
BstMAI	GTCTC	2 cut(s)	244, 250
BstMBI	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 629, 638
BstNI	CCWGG	2 cut(s)	18, 582
BstSCI	CCNGG	2 cut(s)	16, 580
BstSFI	CTRYAG	2 cut(s)	65, 639
BstV1I	GCAGC	2 cut(s)	157, 635
BstX2I	RGATCY	2 cut(s)	193, 293
BstYI	RGATCY	2 cut(s)	193, 293
BstZ17I	GTATAC	1 cut(s)	538
Bsu36I	CCTNAGG	2 cut(s)	557, 733
BsuRI	GGCC	3 cut(s)	345, 467, 791
BtgI	CCRYGG	4 cut(s)	152, 187, 357, 385
BtsCI	GGATG	2 cut(s)	216, 728
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 303
BveI	ACCTGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	6 cut(s)	153, 188, 358, 386, 437, 743
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	4 cut(s)	557, 633, 684, 733
DpnI	GATC	8 cut(s)	114, 185, 195, 295, 593, 645, 654, 822
DpnII	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
EaeI	YGGCCR	2 cut(s)	465, 789
Eam1104I	CTCTTC	2 cut(s)	39, 319
EarI	CTCTTC	2 cut(s)	39, 319
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	4 cut(s)	152, 187, 357, 385
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	380
Eco81I	CCTNAGG	2 cut(s)	557, 733
Eco88I	CYCGRG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	16, 580
EcoT14I	CCWWGG	4 cut(s)	152, 187, 357, 385
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	4 cut(s)	152, 187, 357, 385
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	6 cut(s)	156, 191, 361, 389, 440, 746
FalI	AAGNNNNNCTT	2 cut(s)	763, 795
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	6 cut(s)	152, 187, 357, 385, 436, 742
FblI	GTMKAC	2 cut(s)	132, 537
Fnu4HI	GCNGC	3 cut(s)	171, 468, 624
FokI	GGATG	2 cut(s)	203, 715
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	3 cut(s)	171, 468, 624
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	3 cut(s)	171, 468, 624
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	345, 467, 791
HapII	CCGG	3 cut(s)	174, 197, 719
Hin1II	CATG	6 cut(s)	156, 191, 361, 389, 440, 746
HinfI	GANTC	3 cut(s)	27, 117, 261
HpaII	CCGG	3 cut(s)	174, 197, 719
HphI	GGTGA	1 cut(s)	708
Hpy166II	GTNNAC	3 cut(s)	133, 310, 538
Hpy188I	TCNGA	2 cut(s)	636, 687
Hpy188III	TCNNGA	3 cut(s)	197, 650, 735
Hpy8I	GTNNAC	3 cut(s)	133, 310, 538
HpyAV	CCTTC	2 cut(s)	504, 689
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	67, 440, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 629, 638
HpyF3I	CTNAG	4 cut(s)	557, 633, 684, 733
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	6 cut(s)	156, 191, 361, 389, 440, 746
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	199, 385, 631
Lsp1109I	GCAGC	2 cut(s)	157, 635
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	506
MalI	GATC	8 cut(s)	114, 185, 195, 295, 593, 645, 654, 822
MboI	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
MboII	GAAGA	3 cut(s)	56, 306, 418
MflI	RGATCY	2 cut(s)	193, 293
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	4 cut(s)	319, 432, 518, 832
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	4 cut(s)	147, 509, 611, 844
MslI	CAYNNNNRTG	2 cut(s)	333, 441
MspI	CCGG	3 cut(s)	174, 197, 719
MspR9I	CCNGG	2 cut(s)	18, 582
MvaI	CCWGG	2 cut(s)	18, 582
MwoI	GCNNNNNNNGC	3 cut(s)	179, 629, 638
NcoI	CCATGG	4 cut(s)	152, 187, 357, 385
NdeII	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
NlaIII	CATG	6 cut(s)	156, 191, 361, 389, 440, 746
NlaIV	GGNNCC	1 cut(s)	680
NmeAIII	GCCGAG	1 cut(s)	557
OliI	CACNNNNGTG	1 cut(s)	333
PaeR7I	CTCGAG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	27, 117
PkrI	GCNGC	3 cut(s)	172, 469, 625
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	16, 580
PspGI	CCWGG	2 cut(s)	16, 580
PspN4I	GGNNCC	1 cut(s)	680
PspXI	VCTCGAGB	1 cut(s)	240
PstI	CTGCAG	2 cut(s)	69, 643
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	2 cut(s)	193, 293
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	2 cut(s)	333, 441
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	4 cut(s)	147, 509, 611, 844
SatI	GCNGC	3 cut(s)	171, 468, 624
Sau3AI	GATC	8 cut(s)	112, 183, 193, 293, 591, 643, 652, 820
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	18, 582
SduI	GDGCHC	1 cut(s)	382
SfcI	CTRYAG	2 cut(s)	65, 639
Sfr274I	CTCGAG	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	333, 441
SmlI	CTYRAG	2 cut(s)	240, 709
SmoI	CTYRAG	2 cut(s)	240, 709
Sse9I	AATT	4 cut(s)	319, 432, 518, 832
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	16, 580
StyI	CCWWGG	4 cut(s)	152, 187, 357, 385
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	4 cut(s)	115, 241, 548, 671
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	4 cut(s)	319, 432, 518, 832
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	27, 117
Tru1I	TTAA	4 cut(s)	147, 509, 611, 844
Tru9I	TTAA	4 cut(s)	147, 509, 611, 844
TscAI	CASTG	2 cut(s)	209, 310
TseI	GCWGC	2 cut(s)	170, 623
TspDTI	ATGAA	6 cut(s)	205, 425, 425, 429, 717, 816
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	209, 310
XapI	RAATTY	3 cut(s)	432, 518, 832
XhoI	CTCGAG	1 cut(s)	240
XmiI	GTMKAC	2 cut(s)	132, 537
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.