Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009699

Physical Location & Seq

Genomic Coordinates Forward (+)

2671853 .. 2673776

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1030800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGGATTTACCACCTGGGTATAGATTCTACCCAACAGAGGAAGAGTTGATTTCGTTTTACTTGCACAACAAACTTGATGGGAGGAGTGGGAACTTGAACCGAGTTCTGGACCGAATCATACCCGTTGTATACATTTACGAGTTTAATCCATGGGAACTCCCACAGGTTTCGGGAGAGGTGAGCCATGGAGATTTAGAGCAGTGGTTCTTTTACATCCCAAGACAAGAGAGTGAAACTCGAGGAGGGAGACCGAGACGACTCACAACAACTGGGTATTGGAAAGCAACAGGATCTCCAAGCATTGTTTACTCTTCCAATTCCAATTACAATCATGCGATCGGCCACAAAAGAACCATGGGTTTCTACACTGGCAGAGCTCCACATGGAAAGAAAACCGAGTGGATGATGAATGAATACAAAGGCATCGAAGTTCATGCAGATCATAATAATCAACTATCAATGACAGCTTCTTCATCAAACACTAGTACTAGTACTAGTACTCCTTCTGCTCCCACGTTAAGGGAAGAATTCAGCTTATGCCGAGTGTACAAGAAATCGAAATGCCTTAGGGCATTTGACAGACGACCTCCAGGGATTGAGATCACAAGAAACCCTACCTTAATCATTCAAGCAGCTCCTGCTCAGGGTGCAAATCATCTGGATCAAGGGTCGACAACGTCAAATAGGAATCCTCAGAATATGGGAGATAGAACAAACTTAAGCTCACTGGACAGTTCATCCTCAGGAGACCATGGCTCTCAATCCTCTCAACCAGAGCGAAGTTGGACTTTGCCAATGGCCGTTGATAATGAAGCTATTTGGGAATGGGACGAATTAATGGATAATTGGCTCCATTGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

289

Amino Acids

32.85

Weight (kDa)

6.21

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 141	1.3e-34	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19430
malus_domestica	MD12G1030200.v1.1 MD12G1030500.v1.1 MD14G1030700.v1.1 MD14G1030800.v1.1 MD14G1030900.v1.1 MD14G1031000.v1.1
prunus_persica	Prupe.7G102000_v2.0.a1
pyrus_communis	pycom12g02810 pycom12g02820 pycom14g02790
rosa_chinensis	RchiOBHm_Chr3g0474741
rosa_laevigata	RLG00000023900
rosa_multiflora	Rmu_co8258885.1_g000001 Rmu_sc0007062.1_g000020
rosa_roxburghii	Rroxscaffold_6G00406890
rosa_rugosa	Rorug03G0143000
rosa_samantha	Rh3AG193300 Rh3BG223100 Rh3CG217900 Rh3DG219100
rosa_wichuraiana	Rw3G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	132, 674
AclWI	GGATC	2 cut(s)	301, 672
AcoI	YGGCCR	2 cut(s)	343, 801
AcsI	RAATTY	1 cut(s)	530
AfaI	GTAC	4 cut(s)	490, 496, 502, 551
AfiI	CCNNNNNNNGG	4 cut(s)	40, 109, 522, 647
AflII	CTTAAG	1 cut(s)	721
AgsI	TTSAA	2 cut(s)	100, 632
AhlI	ACTAGT	3 cut(s)	485, 491, 497
AjnI	CCWGG	2 cut(s)	16, 592
AluBI	AGCT	6 cut(s)	380, 470, 537, 638, 726, 818
AluI	AGCT	6 cut(s)	380, 470, 537, 638, 726, 818
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	244, 250, 744
AlwI	GGATC	2 cut(s)	301, 672
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	2 cut(s)	343, 801
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	1 cut(s)	530
AseI	ATTAAT	1 cut(s)	839
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	112
AxyI	CCTNAGG	2 cut(s)	569, 745
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	18, 594
BcoDI	GTCTC	3 cut(s)	244, 250, 744
BcuI	ACTAGT	3 cut(s)	485, 491, 497
BfaI	CTAG	3 cut(s)	486, 492, 498
BfrI	CTTAAG	1 cut(s)	721
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
BmcAI	AGTACT	3 cut(s)	490, 496, 502
Bme1390I	CCNGG	2 cut(s)	18, 594
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	854
BmrFI	CCNGG	2 cut(s)	18, 594
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	602
BsaI	GGTCTC	2 cut(s)	244, 744
BsaJI	CCNNGG	6 cut(s)	17, 152, 187, 357, 593, 754
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 487, 517
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 109, 522, 647
Bse1I	ACTGG	3 cut(s)	277, 376, 735
Bse21I	CCTNAGG	2 cut(s)	569, 745
Bse8I	GATNNNNATC	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	18, 594
BseDI	CCNNGG	6 cut(s)	17, 152, 187, 357, 593, 754
BseGI	GGATG	3 cut(s)	216, 411, 740
BseJI	GATNNNNATC	1 cut(s)	602
BseLI	CCNNNNNNNGG	4 cut(s)	40, 109, 522, 647
BseMII	CTCAG	3 cut(s)	659, 710, 759
BseNI	ACTGG	3 cut(s)	277, 376, 735
BseRI	GAGGAG	2 cut(s)	100, 258
BseXI	GCAGC	1 cut(s)	647
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	345, 803
BsiEI	CGRYCG	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	4 cut(s)	40, 109, 522, 647
BsmAI	GTCTC	3 cut(s)	244, 250, 744
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	345, 803
Bso31I	GGTCTC	2 cut(s)	244, 744
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	293, 339, 442, 603, 664
Bsp19I	CCATGG	4 cut(s)	152, 187, 357, 754
BspANI	GGCC	2 cut(s)	345, 803
BspCNI	CTCAG	3 cut(s)	658, 709, 758
BspLI	GGNNCC	1 cut(s)	854
BspPI	GGATC	2 cut(s)	301, 672
BspTI	CTTAAG	1 cut(s)	721
BspTNI	GGTCTC	2 cut(s)	244, 744
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	3 cut(s)	277, 376, 735
BssECI	CCNNGG	6 cut(s)	17, 152, 187, 357, 593, 754
BssMI	GATC	5 cut(s)	293, 339, 442, 603, 664
BssNAI	GTATAC	1 cut(s)	133
BssT1I	CCWWGG	4 cut(s)	152, 187, 357, 754
Bst1107I	GTATAC	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	18, 594
Bst4CI	ACNGT	1 cut(s)	737
Bst6I	CTCTTC	2 cut(s)	39, 319
BstAFI	CTTAAG	1 cut(s)	721
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	549
BstDEI	CTNAG	4 cut(s)	569, 645, 696, 745
BstDSI	CCRYGG	4 cut(s)	152, 187, 357, 754
BstF5I	GGATG	3 cut(s)	216, 411, 740
BstKTI	GATC	5 cut(s)	296, 342, 445, 606, 667
BstMAI	GTCTC	3 cut(s)	244, 250, 744
BstMBI	GATC	5 cut(s)	293, 339, 442, 603, 664
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 650
BstNI	CCWGG	2 cut(s)	18, 594
BstSCI	CCNGG	2 cut(s)	16, 592
BstV1I	GCAGC	1 cut(s)	647
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BstZ17I	GTATAC	1 cut(s)	133
Bsu36I	CCTNAGG	2 cut(s)	569, 745
BsuRI	GGCC	2 cut(s)	345, 803
BtgI	CCRYGG	4 cut(s)	152, 187, 357, 754
BtsCI	GGATG	3 cut(s)	216, 411, 740
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	209, 369, 728
CaiI	CAGNNNCTG	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	489, 495, 501, 550
CviAII	CATG	7 cut(s)	153, 188, 335, 358, 386, 437, 755
CviQI	GTAC	4 cut(s)	489, 495, 501, 550
DdeI	CTNAG	4 cut(s)	569, 645, 696, 745
DpnI	GATC	5 cut(s)	295, 341, 444, 605, 666
DpnII	GATC	5 cut(s)	293, 339, 442, 603, 664
EaeI	YGGCCR	2 cut(s)	343, 801
Eam1104I	CTCTTC	2 cut(s)	39, 319
EarI	CTCTTC	2 cut(s)	39, 319
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	4 cut(s)	152, 187, 357, 754
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	2 cut(s)	244, 744
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	380
Eco81I	CCTNAGG	2 cut(s)	569, 745
Eco88I	CYCGRG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	2 cut(s)	16, 592
EcoT14I	CCWWGG	4 cut(s)	152, 187, 357, 754
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	4 cut(s)	152, 187, 357, 754
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	7 cut(s)	156, 191, 338, 361, 389, 440, 758
FalI	AAGNNNNNCTT	2 cut(s)	775, 807
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	7 cut(s)	152, 187, 334, 357, 385, 436, 754
FblI	GTMKAC	2 cut(s)	132, 674
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	3 cut(s)	203, 418, 727
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	3 cut(s)	486, 492, 498
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	345, 803
Hin1II	CATG	7 cut(s)	156, 191, 338, 361, 389, 440, 758
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	4 cut(s)	27, 117, 261, 691
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	4 cut(s)	133, 310, 550, 675
Hpy188I	TCNGA	1 cut(s)	699
Hpy188III	TCNNGA	4 cut(s)	110, 174, 662, 747
Hpy8I	GTNNAC	4 cut(s)	133, 310, 550, 675
HpyAV	CCTTC	1 cut(s)	516
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4IV	ACGT	2 cut(s)	518, 680
HpyCH4V	TGCA	3 cut(s)	67, 440, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 650
HpyF3I	CTNAG	4 cut(s)	569, 645, 696, 745
HpySE526I	ACGT	2 cut(s)	518, 680
Hsp92II	CATG	7 cut(s)	156, 191, 338, 361, 389, 440, 758
Kzo9I	GATC	5 cut(s)	293, 339, 442, 603, 664
LmnI	GCTCC	4 cut(s)	385, 517, 643, 858
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	3 cut(s)	486, 492, 498
MaeII	ACGT	2 cut(s)	518, 680
MalI	GATC	5 cut(s)	295, 341, 444, 605, 666
MboI	GATC	5 cut(s)	293, 339, 442, 603, 664
MboII	GAAGA	4 cut(s)	56, 306, 465, 539
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	5 cut(s)	319, 325, 530, 836, 847
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	34, 78, 172, 236, 239, 600, 705, 754, 778
MseI	TTAA	6 cut(s)	147, 521, 623, 722, 839, 865
MspCI	CTTAAG	1 cut(s)	721
MspR9I	CCNGG	2 cut(s)	18, 594
MvaI	CCWGG	2 cut(s)	18, 594
MwoI	GCNNNNNNNGC	2 cut(s)	641, 650
NcoI	CCATGG	4 cut(s)	152, 187, 357, 754
NdeII	GATC	5 cut(s)	293, 339, 442, 603, 664
NlaIII	CATG	7 cut(s)	156, 191, 338, 361, 389, 440, 758
NlaIV	GGNNCC	1 cut(s)	854
NmeAIII	GCCGAG	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	27, 117, 691
PflFI	GACNNNGTC	1 cut(s)	679
PkrI	GCNGC	1 cut(s)	637
Ple19I	CGATCG	1 cut(s)	342
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	839
Psp124BI	GAGCTC	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	16, 592
PspGI	CCWGG	2 cut(s)	16, 592
PspN4I	GGNNCC	1 cut(s)	854
PspPI	GGNCC	1 cut(s)	112
PspXI	VCTCGAGB	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	293
PsyI	GACNNNGTC	1 cut(s)	679
PvuI	CGATCG	1 cut(s)	342
RsaI	GTAC	4 cut(s)	490, 496, 502, 551
RsaNI	GTAC	4 cut(s)	489, 495, 501, 550
SacI	GAGCTC	1 cut(s)	382
SalI	GTCGAC	1 cut(s)	673
SaqAI	TTAA	6 cut(s)	147, 521, 623, 722, 839, 865
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	5 cut(s)	293, 339, 442, 603, 664
Sau96I	GGNCC	1 cut(s)	112
ScaI	AGTACT	3 cut(s)	490, 496, 502
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	18, 594
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	240
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	240, 721
SmoI	CTYRAG	2 cut(s)	240, 721
SpeI	ACTAGT	3 cut(s)	485, 491, 497
Sse9I	AATT	5 cut(s)	319, 325, 530, 836, 847
SspMI	CTAG	3 cut(s)	486, 492, 498
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	16, 592
StyI	CCWWGG	4 cut(s)	152, 187, 357, 754
TaaI	ACNGT	1 cut(s)	737
TaiI	ACGT	2 cut(s)	521, 683
TaqI	TCGA	4 cut(s)	241, 429, 560, 674
TaqII	GACCGA	2 cut(s)	129, 268
TasI	AATT	5 cut(s)	319, 325, 530, 836, 847
TatI	WGTACW	4 cut(s)	488, 494, 500, 549
TfiI	GAWTC	3 cut(s)	27, 117, 691
Tru1I	TTAA	6 cut(s)	147, 521, 623, 722, 839, 865
Tru9I	TTAA	6 cut(s)	147, 521, 623, 722, 839, 865
TscAI	CASTG	3 cut(s)	209, 376, 735
TseI	GCWGC	1 cut(s)	635
TspDTI	ATGAA	6 cut(s)	425, 425, 429, 465, 729, 828
TspRI	CASTG	3 cut(s)	209, 376, 735
Tth111I	GACNNNGTC	1 cut(s)	679
Vha464I	CTTAAG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	839
XapI	RAATTY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	783
XhoI	CTCGAG	1 cut(s)	240
XmiI	GTMKAC	2 cut(s)	132, 674
XspI	CTAG	3 cut(s)	486, 492, 498
ZrmI	AGTACT	3 cut(s)	490, 496, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.