Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009699

Physical Location & Seq

Genomic Coordinates Forward (+)

2123466 .. 2125424

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGGATTTACCACCTGGATATAGATTCTACCCAACTGAGGAAGAGCTGATTTCGTTTTACTTGCAGAATAAACTTGATGGGAAGAGTGAGGACCTGAACCGAGTTCTGGACCGAATCGTACCCGTTGTTTACATTTACGAGTTTAATCCATGGGAACTTCCACAGGTTTCGGGAGAGGTGAGCCATGAAGATCCAGAGCAGTGGTTCTTTTTCATCCCAAGACAAGCGAGTGAAGCTCGTGGAGGGAGACCGAGACGACTCACAACAACTGGGTACTGGAAAGCGACAGGATCTCCGAGCACTGTTTACTCTTCCAAATCCAATTACAATCGTCCCATCGGCCACAAAAGAACCATGGGTTTCTACATTGGCAGAGCTCCCCGTGGAAAGAAAACCGAGTGGATGATGAATGAATACAAAGCCATCGAAGTTCATGCAGATCATAGTAATCACCTATCAATGGCAGCTTCTTCATCAAACAGTAGTAGTACTCCTGCTCCCACGTTAAGGGAAGAATTCAGCTTATGCCGAGTGTACAAGAAATCAAAAGGCCTTATTAGGGCATTTGACAGACGACCTCCAGGGATTGAGATCACAAGAAACCCTAGCTTAATCATTCAAGCAGCTCCTGCTCAGGGTGCAAATCATTTGGATCATGGTTCGACAACATCTAATAGGAACCCTCAGAATATGGGAGAGAGAACAAACTTAAGCTCACTGGAGAGTTCATCCTCAGGAAACCATGGCTCTCAATCCTCTCAACCAGAACAAAGTGGGTCTTTGCTAATGGCCGTTGACAATGAAGCTATTTGGGATTGGGACGAATTAATGGATAATTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

283

Amino Acids

31.93

Weight (kDa)

6.26

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 141	2.3e-35	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19430
malus_domestica	MD12G1030200.v1.1 MD12G1030500.v1.1 MD14G1030700.v1.1 MD14G1030800.v1.1 MD14G1030900.v1.1 MD14G1031000.v1.1
prunus_persica	Prupe.7G102000_v2.0.a1
pyrus_communis	pycom12g02810 pycom12g02820 pycom14g02790
rosa_chinensis	RchiOBHm_Chr3g0474741
rosa_laevigata	RLG00000023900
rosa_multiflora	Rmu_co8258885.1_g000001 Rmu_sc0007062.1_g000020
rosa_roxburghii	Rroxscaffold_6G00406890
rosa_rugosa	Rorug03G0143000
rosa_samantha	Rh3AG193300 Rh3BG223100 Rh3CG217900 Rh3DG219100
rosa_wichuraiana	Rw3G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	188, 301, 663
AcoI	YGGCCR	2 cut(s)	343, 792
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	4 cut(s)	123, 278, 493, 539
AfiI	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 510, 562, 638
AflII	CTTAAG	1 cut(s)	712
AgsI	TTSAA	1 cut(s)	623
AjnI	CCWGG	2 cut(s)	16, 583
AluBI	AGCT	9 cut(s)	49, 239, 380, 470, 525, 612, 629, 717, 809
AluI	AGCT	9 cut(s)	49, 239, 380, 470, 525, 612, 629, 717, 809
Alw21I	GWGCWC	2 cut(s)	305, 382
Alw26I	GTCTC	2 cut(s)	244, 250
AlwI	GGATC	3 cut(s)	188, 301, 663
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	343, 553, 792
ApeKI	GCWGC	2 cut(s)	467, 626
ApoI	RAATTY	1 cut(s)	518
AseI	ATTAAT	1 cut(s)	830
AspS9I	GGNCC	2 cut(s)	94, 112
AsuHPI	GGTGA	2 cut(s)	193, 446
AvaII	GGWCC	2 cut(s)	94, 112
AxyI	CCTNAGG	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	305, 382
BbvI	GCAGC	2 cut(s)	479, 638
BccI	CCATC	3 cut(s)	74, 347, 434
BceAI	ACGGC	1 cut(s)	779
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	18, 585
BcoDI	GTCTC	2 cut(s)	244, 250
BfaI	CTAG	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	712
BisI	GCNGC	2 cut(s)	468, 627
BlsI	GCNGC	2 cut(s)	469, 628
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	2 cut(s)	18, 585
Bme18I	GGWCC	2 cut(s)	94, 112
BmgT120I	GGNCC	2 cut(s)	94, 112
BmiI	GGNNCC	1 cut(s)	683
BmrFI	CCNGG	2 cut(s)	18, 585
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	2 cut(s)	567, 743
Bpu10I	CCTNAGC	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	5 cut(s)	152, 357, 385, 584, 745
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 484, 514
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 510, 562, 638
Bse1I	ACTGG	3 cut(s)	277, 284, 726
Bse21I	CCTNAGG	1 cut(s)	736
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	18, 585
BseDI	CCNNGG	5 cut(s)	152, 357, 385, 584, 745
BseGI	GGATG	3 cut(s)	216, 411, 731
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 510, 562, 638
BseMII	CTCAG	4 cut(s)	30, 650, 701, 750
BseNI	ACTGG	3 cut(s)	277, 284, 726
BseXI	GCAGC	2 cut(s)	479, 638
BshFI	GGCC	3 cut(s)	345, 555, 794
BsiHKAI	GWGCWC	2 cut(s)	305, 382
BslFI	GGGAC	2 cut(s)	321, 836
BslI	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 510, 562, 638
BsmAI	GTCTC	2 cut(s)	244, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	321, 836
BsnI	GGCC	3 cut(s)	345, 555, 794
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	305, 382
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	5 cut(s)	193, 293, 442, 594, 655
Bsp19I	CCATGG	3 cut(s)	152, 357, 745
BspANI	GGCC	3 cut(s)	345, 555, 794
BspCNI	CTCAG	4 cut(s)	31, 649, 700, 749
BspLI	GGNNCC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	188, 301, 663
BspQI	GCTCTTC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	712
BspTNI	GGTCTC	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	277, 284, 726
BssECI	CCNNGG	5 cut(s)	152, 357, 385, 584, 745
BssMI	GATC	5 cut(s)	193, 293, 442, 594, 655
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	3 cut(s)	152, 357, 745
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	18, 585
Bst4CI	ACNGT	2 cut(s)	307, 485
Bst6I	CTCTTC	3 cut(s)	39, 80, 319
BstAFI	CTTAAG	1 cut(s)	712
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	537
BstDEI	CTNAG	4 cut(s)	39, 636, 687, 736
BstDSI	CCRYGG	4 cut(s)	152, 357, 385, 745
BstF5I	GGATG	3 cut(s)	216, 411, 731
BstKTI	GATC	5 cut(s)	196, 296, 445, 597, 658
BstMAI	GTCTC	2 cut(s)	244, 250
BstMBI	GATC	5 cut(s)	193, 293, 442, 594, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 632, 641
BstNI	CCWGG	2 cut(s)	18, 585
BstSCI	CCNGG	2 cut(s)	16, 583
BstV1I	GCAGC	2 cut(s)	479, 638
BstX2I	RGATCY	2 cut(s)	193, 293
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	2 cut(s)	193, 293
Bsu36I	CCTNAGG	1 cut(s)	736
BsuRI	GGCC	3 cut(s)	345, 555, 794
BtgI	CCRYGG	4 cut(s)	152, 357, 385, 745
BtsCI	GGATG	3 cut(s)	216, 411, 731
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	209, 303, 719
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	94, 112
Csp6I	GTAC	4 cut(s)	122, 277, 492, 538
CviAII	CATG	6 cut(s)	153, 188, 358, 437, 659, 746
CviQI	GTAC	4 cut(s)	122, 277, 492, 538
DdeI	CTNAG	4 cut(s)	39, 636, 687, 736
DpnI	GATC	5 cut(s)	195, 295, 444, 596, 657
DpnII	GATC	5 cut(s)	193, 293, 442, 594, 655
EaeI	YGGCCR	2 cut(s)	343, 792
Eam1104I	CTCTTC	3 cut(s)	39, 80, 319
EarI	CTCTTC	3 cut(s)	39, 80, 319
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	3 cut(s)	152, 357, 745
Eco147I	AGGCCT	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	94, 112
Eco53kI	GAGCTC	1 cut(s)	380
Eco81I	CCTNAGG	1 cut(s)	736
EcoICRI	GAGCTC	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	16, 583
EcoT14I	CCWWGG	3 cut(s)	152, 357, 745
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	3 cut(s)	152, 357, 745
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	6 cut(s)	156, 191, 361, 440, 662, 749
FalI	AAGNNNNNCTT	2 cut(s)	766, 798
FaqI	GGGAC	2 cut(s)	321, 836
FatI	CATG	6 cut(s)	152, 187, 357, 436, 658, 745
Fnu4HI	GCNGC	2 cut(s)	468, 627
FokI	GGATG	3 cut(s)	203, 418, 718
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	468, 627
FspBI	CTAG	1 cut(s)	609
GluI	GCNGC	2 cut(s)	468, 627
GsuI	CTGGAG	2 cut(s)	567, 743
HaeIII	GGCC	3 cut(s)	345, 555, 794
Hin1II	CATG	6 cut(s)	156, 191, 361, 440, 662, 749
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HinfI	GANTC	3 cut(s)	27, 117, 261
HphI	GGTGA	2 cut(s)	193, 446
Hpy166II	GTNNAC	4 cut(s)	133, 310, 538, 799
Hpy188I	TCNGA	2 cut(s)	300, 690
Hpy188III	TCNNGA	4 cut(s)	110, 174, 197, 738
Hpy8I	GTNNAC	4 cut(s)	133, 310, 538, 799
HpyCH4III	ACNGT	2 cut(s)	307, 485
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	3 cut(s)	67, 440, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 632, 641
HpyF3I	CTNAG	4 cut(s)	39, 636, 687, 736
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	6 cut(s)	156, 191, 361, 440, 662, 749
Kzo9I	GATC	5 cut(s)	193, 293, 442, 594, 655
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	385, 505, 634
Lsp1109I	GCAGC	2 cut(s)	479, 638
MaeI	CTAG	1 cut(s)	609
MaeII	ACGT	1 cut(s)	506
MalI	GATC	5 cut(s)	195, 295, 444, 596, 657
MboI	GATC	5 cut(s)	193, 293, 442, 594, 655
MboII	GAAGA	6 cut(s)	56, 97, 203, 306, 465, 527
MflI	RGATCY	2 cut(s)	193, 293
MhlI	GDGCHC	2 cut(s)	305, 382
MluCI	AATT	4 cut(s)	325, 518, 827, 838
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	34, 85, 172, 239, 591, 696, 745, 769
MseI	TTAA	6 cut(s)	147, 509, 614, 713, 830, 847
MspCI	CTTAAG	1 cut(s)	712
MspR9I	CCNGG	2 cut(s)	18, 585
MvaI	CCWGG	2 cut(s)	18, 585
MwoI	GCNNNNNNNGC	3 cut(s)	236, 632, 641
NcoI	CCATGG	3 cut(s)	152, 357, 745
NdeII	GATC	5 cut(s)	193, 293, 442, 594, 655
NlaIII	CATG	6 cut(s)	156, 191, 361, 440, 662, 749
NlaIV	GGNNCC	1 cut(s)	683
NmeAIII	GCCGAG	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	555
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	27, 117
PkrI	GCNGC	2 cut(s)	469, 628
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	830
Psp124BI	GAGCTC	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	16, 583
PspGI	CCWGG	2 cut(s)	16, 583
PspN4I	GGNNCC	1 cut(s)	683
PspPI	GGNCC	2 cut(s)	94, 112
PspPPI	RGGWCCY	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	193, 293
RsaI	GTAC	4 cut(s)	123, 278, 493, 539
RsaNI	GTAC	4 cut(s)	122, 277, 492, 538
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	6 cut(s)	147, 509, 614, 713, 830, 847
SatI	GCNGC	2 cut(s)	468, 627
Sau3AI	GATC	5 cut(s)	193, 293, 442, 594, 655
Sau96I	GGNCC	2 cut(s)	94, 112
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	18, 585
SduI	GDGCHC	2 cut(s)	305, 382
SinI	GGWCC	2 cut(s)	94, 112
SmlI	CTYRAG	1 cut(s)	712
SmoI	CTYRAG	1 cut(s)	712
Sse9I	AATT	4 cut(s)	325, 518, 827, 838
SseBI	AGGCCT	1 cut(s)	555
SspMI	CTAG	1 cut(s)	609
SstI	GAGCTC	1 cut(s)	382
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	2 cut(s)	16, 583
StyI	CCWWGG	3 cut(s)	152, 357, 745
TaaI	ACNGT	2 cut(s)	307, 485
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	429, 665
TaqII	GACCGA	2 cut(s)	129, 268
TasI	AATT	4 cut(s)	325, 518, 827, 838
TatI	WGTACW	2 cut(s)	491, 537
TfiI	GAWTC	2 cut(s)	27, 117
Tru1I	TTAA	6 cut(s)	147, 509, 614, 713, 830, 847
Tru9I	TTAA	6 cut(s)	147, 509, 614, 713, 830, 847
TscAI	CASTG	3 cut(s)	209, 310, 726
TseI	GCWGC	2 cut(s)	467, 626
TspDTI	ATGAA	8 cut(s)	204, 205, 425, 425, 429, 465, 720, 819
TspRI	CASTG	3 cut(s)	209, 310, 726
Vha464I	CTTAAG	1 cut(s)	712
VpaK11BI	GGWCC	2 cut(s)	94, 112
VspI	ATTAAT	1 cut(s)	830
XapI	RAATTY	1 cut(s)	518
XspI	CTAG	1 cut(s)	609
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.