Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0009699

Physical Location & Seq

Genomic Coordinates Forward (+)

2648438 .. 2650377

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1030700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAGGATTTACCACCTGGATATAGATTCTACCCAACTGAGGAAGAGCTGATTTCGTTTTACTTGCAGAATAAACTTGATGGGAGGAGTGAGGACCTGAACCGAGTTCTGGACCGAATCGTACCCGTTGTTTACATTTATGAGTTTAATCCATGGGAACTTCCACAGGTTTCGGGAGAGGTGAGCCATGAAGATCCAGAGCAGTGGTTCTTTTTCATCCCAAGACAAGCGAGTGAAGCTCGAGGAGGGAGACCGAGACGACTCACAACAACTGGGTATTGGAAAGCGACTGGATCTCCGAGCACTGTTTACTCTTCCAAATCCAATTACAATCGTCCCATCGGCCACAAAAGAACCATGGGTTTCTACATTGGCAAAGCTCCCCGTGGAAAGAAAACCGAGTGGATGATGAATGAATACAAAGCCATCGAAGGTCATGCAGATCATAGTAATCACCTTTCAATGGCAGCTTCTTCATCAAACACTAGTAGTAGTACTCCTGCTCCCACGTTAAGGGAAGAATTCAGCATATGCCGGGTGTACAAGAAATCGAAATGCCTTATTAGGGCATTTGACAGACGACCTCCTGGGATTGAGATGACTAGAAACCCTAGCTTAATCATTCAAGCAGCTCCTGCTCAGGGTGCAAATCATTTGGATCATGGTTCGACAACATCGAATAGGAACCCTCAGAATATGGGAGAGAGAGCAAACTTAAGCTCACTGGAGAGTTCATCCTCAGGAAACCATGGCTCTCAATCATCTCAACCAGAACAAAGTGGGTCTTTGCTAATGGCCGTTGATAATGAAGCTATTTGGGATTGGGACGAATTAATGGATAATTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

284

Amino Acids

32.03

Weight (kDa)

6.26

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 141	3e-35	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19430
malus_domestica	MD12G1030200.v1.1 MD12G1030500.v1.1 MD14G1030700.v1.1 MD14G1030800.v1.1 MD14G1030900.v1.1 MD14G1031000.v1.1
prunus_persica	Prupe.7G102000_v2.0.a1
pyrus_communis	pycom12g02810 pycom12g02820 pycom14g02790
rosa_chinensis	RchiOBHm_Chr3g0474741
rosa_laevigata	RLG00000023900
rosa_multiflora	Rmu_co8258885.1_g000001 Rmu_sc0007062.1_g000020
rosa_roxburghii	Rroxscaffold_6G00406890
rosa_rugosa	Rorug03G0143000
rosa_samantha	Rh3AG193300 Rh3BG223100 Rh3CG217900 Rh3DG219100
rosa_wichuraiana	Rw3G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	188, 301, 666
AcoI	YGGCCR	2 cut(s)	343, 795
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	3 cut(s)	123, 496, 542
AfiI	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 513, 565, 641
AflII	CTTAAG	1 cut(s)	715
AgsI	TTSAA	2 cut(s)	462, 626
AhlI	ACTAGT	1 cut(s)	485
AjnI	CCWGG	2 cut(s)	16, 586
AluBI	AGCT	8 cut(s)	49, 239, 380, 470, 615, 632, 720, 812
AluI	AGCT	8 cut(s)	49, 239, 380, 470, 615, 632, 720, 812
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	244, 250
AlwI	GGATC	3 cut(s)	188, 301, 666
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	2 cut(s)	343, 795
ApeKI	GCWGC	2 cut(s)	467, 629
ApoI	RAATTY	1 cut(s)	521
AseI	ATTAAT	1 cut(s)	833
AspS9I	GGNCC	2 cut(s)	94, 112
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	193, 446
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	94, 112
AxyI	CCTNAGG	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	479, 641
BccI	CCATC	3 cut(s)	74, 347, 434
BceAI	ACGGC	1 cut(s)	782
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	18, 588
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	244, 250
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	3 cut(s)	486, 603, 612
BfrI	CTTAAG	1 cut(s)	715
BisI	GCNGC	2 cut(s)	468, 630
BlsI	GCNGC	2 cut(s)	469, 631
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	18, 536, 588
Bme18I	GGWCC	2 cut(s)	94, 112
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	94, 112
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	3 cut(s)	18, 536, 588
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	639
BpuMI	CCSGG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	5 cut(s)	152, 357, 385, 587, 748
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 487, 517
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 513, 565, 641
Bse1I	ACTGG	3 cut(s)	277, 295, 729
Bse21I	CCTNAGG	1 cut(s)	739
BseBI	CCWGG	2 cut(s)	18, 588
BseDI	CCNNGG	5 cut(s)	152, 357, 385, 587, 748
BseGI	GGATG	3 cut(s)	216, 411, 734
BseLI	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 513, 565, 641
BseMII	CTCAG	4 cut(s)	30, 653, 704, 753
BseNI	ACTGG	3 cut(s)	277, 295, 729
BseRI	GAGGAG	2 cut(s)	100, 258
BseXI	GCAGC	2 cut(s)	479, 641
BshFI	GGCC	2 cut(s)	345, 797
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	535
BslFI	GGGAC	2 cut(s)	321, 839
BslI	CCNNNNNNNGG	6 cut(s)	40, 109, 463, 513, 565, 641
BsmAI	GTCTC	2 cut(s)	244, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	321, 839
BsnI	GGCC	2 cut(s)	345, 797
Bso31I	GGTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	4 cut(s)	193, 293, 442, 658
Bsp19I	CCATGG	3 cut(s)	152, 357, 748
BspANI	GGCC	2 cut(s)	345, 797
BspCNI	CTCAG	4 cut(s)	31, 652, 703, 752
BspLI	GGNNCC	1 cut(s)	686
BspPI	GGATC	3 cut(s)	188, 301, 666
BspQI	GCTCTTC	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	3 cut(s)	277, 295, 729
BssECI	CCNNGG	5 cut(s)	152, 357, 385, 587, 748
BssMI	GATC	4 cut(s)	193, 293, 442, 658
BssT1I	CCWWGG	3 cut(s)	152, 357, 748
Bst2UI	CCWGG	2 cut(s)	18, 588
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	39, 319
BstAFI	CTTAAG	1 cut(s)	715
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	39, 639, 690, 739
BstDSI	CCRYGG	4 cut(s)	152, 357, 385, 748
BstF5I	GGATG	3 cut(s)	216, 411, 734
BstKTI	GATC	4 cut(s)	196, 296, 445, 661
BstMAI	GTCTC	2 cut(s)	244, 250
BstMBI	GATC	4 cut(s)	193, 293, 442, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 635, 644
BstNI	CCWGG	2 cut(s)	18, 588
BstSCI	CCNGG	3 cut(s)	16, 534, 586
BstV1I	GCAGC	2 cut(s)	479, 641
BstX2I	RGATCY	2 cut(s)	193, 293
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	2 cut(s)	193, 293
Bsu36I	CCTNAGG	1 cut(s)	739
BsuRI	GGCC	2 cut(s)	345, 797
BtgI	CCRYGG	4 cut(s)	152, 357, 385, 748
BtsCI	GGATG	3 cut(s)	216, 411, 734
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	209, 303, 722
CaiI	CAGNNNCTG	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	94, 112
Csp6I	GTAC	3 cut(s)	122, 495, 541
CviAII	CATG	6 cut(s)	153, 188, 358, 437, 662, 749
CviQI	GTAC	3 cut(s)	122, 495, 541
DdeI	CTNAG	4 cut(s)	39, 639, 690, 739
DpnI	GATC	4 cut(s)	195, 295, 444, 660
DpnII	GATC	4 cut(s)	193, 293, 442, 658
EaeI	YGGCCR	2 cut(s)	343, 795
Eam1104I	CTCTTC	2 cut(s)	39, 319
EarI	CTCTTC	2 cut(s)	39, 319
Eco130I	CCWWGG	3 cut(s)	152, 357, 748
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	94, 112
Eco81I	CCTNAGG	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	16, 586
EcoT14I	CCWWGG	3 cut(s)	152, 357, 748
ErhI	CCWWGG	3 cut(s)	152, 357, 748
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	6 cut(s)	156, 191, 361, 440, 665, 752
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FaqI	GGGAC	2 cut(s)	321, 839
FatI	CATG	6 cut(s)	152, 187, 357, 436, 661, 748
FauNDI	CATATG	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	468, 630
FokI	GGATG	3 cut(s)	203, 418, 721
Fsp4HI	GCNGC	2 cut(s)	468, 630
FspBI	CTAG	3 cut(s)	486, 603, 612
GluI	GCNGC	2 cut(s)	468, 630
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	2 cut(s)	345, 797
HapII	CCGG	1 cut(s)	535
Hin1II	CATG	6 cut(s)	156, 191, 361, 440, 665, 752
HinfI	GANTC	3 cut(s)	27, 117, 261
HpaII	CCGG	1 cut(s)	535
HphI	GGTGA	2 cut(s)	193, 446
Hpy166II	GTNNAC	3 cut(s)	133, 310, 541
Hpy188I	TCNGA	2 cut(s)	300, 693
Hpy188III	TCNNGA	4 cut(s)	110, 174, 197, 741
Hpy8I	GTNNAC	3 cut(s)	133, 310, 541
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	3 cut(s)	67, 440, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 635, 644
HpyF3I	CTNAG	4 cut(s)	39, 639, 690, 739
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	6 cut(s)	156, 191, 361, 440, 665, 752
Kzo9I	GATC	4 cut(s)	193, 293, 442, 658
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	385, 508, 637
Lsp1109I	GCAGC	2 cut(s)	479, 641
MaeI	CTAG	3 cut(s)	486, 603, 612
MaeII	ACGT	1 cut(s)	509
MalI	GATC	4 cut(s)	195, 295, 444, 660
MboI	GATC	4 cut(s)	193, 293, 442, 658
MboII	GAAGA	5 cut(s)	56, 203, 306, 465, 530
MflI	RGATCY	2 cut(s)	193, 293
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	4 cut(s)	325, 521, 830, 841
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	34, 78, 85, 172, 236, 239, 594, 699, 748
MseI	TTAA	6 cut(s)	147, 512, 617, 716, 833, 850
MspCI	CTTAAG	1 cut(s)	715
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	3 cut(s)	18, 536, 588
MvaI	CCWGG	2 cut(s)	18, 588
MwoI	GCNNNNNNNGC	3 cut(s)	236, 635, 644
NciI	CCSGG	1 cut(s)	536
NcoI	CCATGG	3 cut(s)	152, 357, 748
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	4 cut(s)	193, 293, 442, 658
NlaIII	CATG	6 cut(s)	156, 191, 361, 440, 665, 752
NlaIV	GGNNCC	1 cut(s)	686
PaeR7I	CTCGAG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	674
PfeI	GAWTC	2 cut(s)	27, 117
PkrI	GCNGC	2 cut(s)	469, 631
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	94
PshBI	ATTAAT	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	16, 586
PspGI	CCWGG	2 cut(s)	16, 586
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	2 cut(s)	94, 112
PspPPI	RGGWCCY	1 cut(s)	94
PspXI	VCTCGAGB	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	193, 293
RsaI	GTAC	3 cut(s)	123, 496, 542
RsaNI	GTAC	3 cut(s)	122, 495, 541
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	6 cut(s)	147, 512, 617, 716, 833, 850
SatI	GCNGC	2 cut(s)	468, 630
Sau3AI	GATC	4 cut(s)	193, 293, 442, 658
Sau96I	GGNCC	2 cut(s)	94, 112
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	3 cut(s)	18, 536, 588
SduI	GDGCHC	1 cut(s)	305
Sfr274I	CTCGAG	1 cut(s)	240
SinI	GGWCC	2 cut(s)	94, 112
SlaI	CTCGAG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	240, 715
SmoI	CTYRAG	2 cut(s)	240, 715
SpeI	ACTAGT	1 cut(s)	485
Sse9I	AATT	4 cut(s)	325, 521, 830, 841
SspMI	CTAG	3 cut(s)	486, 603, 612
StyD4I	CCNGG	3 cut(s)	16, 534, 586
StyI	CCWWGG	3 cut(s)	152, 357, 748
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	5 cut(s)	241, 429, 551, 668, 677
TaqII	GACCGA	2 cut(s)	129, 268
TasI	AATT	4 cut(s)	325, 521, 830, 841
TatI	WGTACW	2 cut(s)	494, 540
TfiI	GAWTC	2 cut(s)	27, 117
Tru1I	TTAA	6 cut(s)	147, 512, 617, 716, 833, 850
Tru9I	TTAA	6 cut(s)	147, 512, 617, 716, 833, 850
TscAI	CASTG	3 cut(s)	209, 310, 729
TseI	GCWGC	2 cut(s)	467, 629
TspDTI	ATGAA	7 cut(s)	204, 205, 425, 429, 465, 723, 822
TspRI	CASTG	3 cut(s)	209, 310, 729
Vha464I	CTTAAG	1 cut(s)	715
VpaK11BI	GGWCC	2 cut(s)	94, 112
VspI	ATTAAT	1 cut(s)	833
XapI	RAATTY	1 cut(s)	521
XhoI	CTCGAG	1 cut(s)	240
XspI	CTAG	3 cut(s)	486, 603, 612
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.