Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009699

Physical Location & Seq

Genomic Coordinates Forward (+)

2527851 .. 2529913

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGGATTTACCACCTGGATTTAGATTCTCTCCAACAGAGGAAGAGCTGATTTCGTTTTACCTGCAGAACAAACTTGATGGGAGGAGTGAGGACTTGAACCGAGTTGTGGATCGAATCATACCCGTTGTCTACATTTACGAGTTTAATCCATGGGAACTCCCACAGGCTGCCGGTGAGGCGATCCATGGAGATCCAGAGCAGTGGTTCTTTTTCATCCCAAGACAAGAATGTGAAGCTCGAGGAGGGAGACCGAGACGACTCACAACAACTGGGTATTGGAAAGCAACAGGATCTCCAAGCACTGTTTACTCTTCCAATTCCAGTAACTATCGTGCCATCGGCCTCAAAAGAACCATGGTTTTCTATACTGGCAGAGCTCCCCATGGAAAGAAAACGGAGTGGAAGATGAATGAATACAAAGGCATTGCAATTCATGCAGATGATAATAATCAACCATCAATGACCGCCTCCTCATCAAACCCTAGTACTCCTACTCCCACGTTAAGGCAAGAATTCAGCTTATGCCGAGTATACAAGAAATCGAAATGCCTTAGGGCATTTGACAGGCGACCTCCAGGGATTGAGATCACAAGAAACCCTAACTTAAACATTCAAGCAGCTCCTGCTCAGGCTATAGATCATCTGGATAAGGGTTTGACAACGTCGAATAGGAACCCTCAGAATATGGAAGGGAGAACAAACTCAAGCTCACCGGAGAGTTCATCCTCAGGAGGCCATGGCTCTCAATCCTCTCAACCAGAACAAAGTGGGACTTTGCCAATGGCCGTTAATAATGAAGCTATTTGGGATTTGGATCAATTGATAAATTTGTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

281

Amino Acids

31.41

Weight (kDa)

6.97

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19430
malus_domestica	MD12G1030200.v1.1 MD12G1030500.v1.1 MD14G1030700.v1.1 MD14G1030800.v1.1 MD14G1030900.v1.1 MD14G1031000.v1.1
prunus_persica	Prupe.7G102000_v2.0.a1
pyrus_communis	pycom12g02810 pycom12g02820 pycom14g02790
rosa_chinensis	RchiOBHm_Chr3g0474741
rosa_laevigata	RLG00000023900
rosa_multiflora	Rmu_co8258885.1_g000001 Rmu_sc0007062.1_g000020
rosa_roxburghii	Rroxscaffold_6G00406890
rosa_rugosa	Rorug03G0143000
rosa_samantha	Rh3AG193300 Rh3BG223100 Rh3CG217900 Rh3DG219100
rosa_wichuraiana	Rw3G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccI	GTMKAC	2 cut(s)	132, 534
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	5 cut(s)	120, 178, 188, 301, 825
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	515, 829
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	109, 507
AgsI	TTSAA	2 cut(s)	100, 617
AjnI	CCWGG	2 cut(s)	16, 577
AluBI	AGCT	7 cut(s)	49, 239, 380, 522, 623, 711, 803
AluI	AGCT	7 cut(s)	49, 239, 380, 522, 623, 711, 803
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	2 cut(s)	244, 250
AlwI	GGATC	5 cut(s)	120, 178, 188, 301, 825
AlwNI	CAGNNNCTG	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	3 cut(s)	343, 736, 786
ApeKI	GCWGC	2 cut(s)	170, 620
ApoI	RAATTY	2 cut(s)	515, 829
AsuHPI	GGTGA	2 cut(s)	188, 705
AvaI	CYCGRG	1 cut(s)	240
AxyI	CCTNAGG	2 cut(s)	554, 730
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	157, 632
BccI	CCATC	3 cut(s)	74, 347, 466
BceAI	ACGGC	1 cut(s)	773
BciT130I	CCWGG	2 cut(s)	18, 579
BcoDI	GTCTC	2 cut(s)	244, 250
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	65, 636
BfuAI	ACCTGC	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	171, 621
BlsI	GCNGC	2 cut(s)	172, 622
BmcAI	AGTACT	1 cut(s)	490
Bme1390I	CCNGG	2 cut(s)	18, 579
BmeT110I	CYCGRG	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	677
BmrFI	CCNGG	2 cut(s)	18, 579
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	691
BsaBI	GATNNNNATC	3 cut(s)	450, 587, 816
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	6 cut(s)	152, 187, 357, 385, 578, 739
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 507
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	3 cut(s)	277, 324, 376
Bse21I	CCTNAGG	2 cut(s)	554, 730
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	3 cut(s)	450, 587, 816
BseBI	CCWGG	2 cut(s)	18, 579
BseDI	CCNNGG	6 cut(s)	152, 187, 357, 385, 578, 739
BseGI	GGATG	2 cut(s)	216, 725
BseJI	GATNNNNATC	3 cut(s)	450, 587, 816
BseLI	CCNNNNNNNGG	2 cut(s)	109, 507
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	644, 695, 744
BseNI	ACTGG	3 cut(s)	277, 324, 376
BseRI	GAGGAG	3 cut(s)	100, 258, 463
BseXI	GCAGC	2 cut(s)	157, 632
BshFI	GGCC	3 cut(s)	345, 738, 788
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	174, 716
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	2 cut(s)	109, 507
BsmAI	GTCTC	2 cut(s)	244, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	345, 738, 788
Bso31I	GGTCTC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
Bsp19I	CCATGG	5 cut(s)	152, 187, 357, 385, 739
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	3 cut(s)	345, 738, 788
BspCNI	CTCAG	3 cut(s)	643, 694, 743
BspLI	GGNNCC	1 cut(s)	677
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	5 cut(s)	120, 178, 188, 301, 825
BspQI	GCTCTTC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	3 cut(s)	277, 324, 376
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	6 cut(s)	152, 187, 357, 385, 578, 739
BssMI	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
BssNAI	GTATAC	1 cut(s)	535
BssT1I	CCWWGG	5 cut(s)	152, 187, 357, 385, 739
Bst1107I	GTATAC	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	18, 579
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	2 cut(s)	39, 319
BstAPI	GCANNNNNTGC	2 cut(s)	437, 626
BstDEI	CTNAG	4 cut(s)	554, 630, 681, 730
BstDSI	CCRYGG	5 cut(s)	152, 187, 357, 385, 739
BstF5I	GGATG	2 cut(s)	216, 725
BstKTI	GATC	7 cut(s)	115, 186, 196, 296, 591, 643, 820
BstMAI	GTCTC	2 cut(s)	244, 250
BstMBI	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 437, 626
BstNI	CCWGG	2 cut(s)	18, 579
BstSCI	CCNGG	2 cut(s)	16, 577
BstSFI	CTRYAG	2 cut(s)	65, 636
BstV1I	GCAGC	2 cut(s)	157, 632
BstX2I	RGATCY	2 cut(s)	193, 293
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	2 cut(s)	193, 293
BstZ17I	GTATAC	1 cut(s)	535
Bsu36I	CCTNAGG	2 cut(s)	554, 730
BsuRI	GGCC	3 cut(s)	345, 738, 788
BtgI	CCRYGG	5 cut(s)	152, 187, 357, 385, 739
BtsCI	GGATG	2 cut(s)	216, 725
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 303
BveI	ACCTGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	626
Cfr10I	RCCGGY	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	6 cut(s)	153, 188, 358, 386, 437, 740
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	4 cut(s)	554, 630, 681, 730
DpnI	GATC	7 cut(s)	114, 185, 195, 295, 590, 642, 819
DpnII	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
EaeI	YGGCCR	1 cut(s)	786
Eam1104I	CTCTTC	2 cut(s)	39, 319
EarI	CTCTTC	2 cut(s)	39, 319
Ecl136II	GAGCTC	1 cut(s)	380
Eco130I	CCWWGG	5 cut(s)	152, 187, 357, 385, 739
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	380
Eco81I	CCTNAGG	2 cut(s)	554, 730
Eco88I	CYCGRG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	16, 577
EcoT14I	CCWWGG	5 cut(s)	152, 187, 357, 385, 739
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	5 cut(s)	152, 187, 357, 385, 739
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	6 cut(s)	156, 191, 361, 389, 440, 743
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	6 cut(s)	152, 187, 357, 385, 436, 739
FblI	GTMKAC	2 cut(s)	132, 534
Fnu4HI	GCNGC	2 cut(s)	171, 621
FokI	GGATG	2 cut(s)	203, 712
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	171, 621
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	171, 621
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	345, 738, 788
HapII	CCGG	2 cut(s)	174, 716
Hin1II	CATG	6 cut(s)	156, 191, 361, 389, 440, 743
HinfI	GANTC	3 cut(s)	27, 117, 261
HpaII	CCGG	2 cut(s)	174, 716
HphI	GGTGA	2 cut(s)	188, 705
Hpy166II	GTNNAC	3 cut(s)	133, 310, 535
Hpy188I	TCNGA	1 cut(s)	684
Hpy188III	TCNNGA	3 cut(s)	197, 647, 732
Hpy8I	GTNNAC	3 cut(s)	133, 310, 535
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	503, 665
HpyCH4V	TGCA	3 cut(s)	67, 431, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 437, 626
HpyF3I	CTNAG	4 cut(s)	554, 630, 681, 730
HpySE526I	ACGT	2 cut(s)	503, 665
Hsp92II	CATG	6 cut(s)	156, 191, 361, 389, 440, 743
Kzo9I	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	385, 628
Lsp1109I	GCAGC	2 cut(s)	157, 632
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	2 cut(s)	503, 665
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	7 cut(s)	114, 185, 195, 295, 590, 642, 819
MboI	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
MboII	GAAGA	3 cut(s)	56, 306, 418
MfeI	CAATTG	1 cut(s)	821
MflI	RGATCY	2 cut(s)	193, 293
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	5 cut(s)	319, 432, 515, 821, 829
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	59
MseI	TTAA	5 cut(s)	147, 506, 608, 792, 841
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	2 cut(s)	174, 716
MspR9I	CCNGG	2 cut(s)	18, 579
MunI	CAATTG	1 cut(s)	821
MvaI	CCWGG	2 cut(s)	18, 579
MwoI	GCNNNNNNNGC	3 cut(s)	179, 437, 626
NcoI	CCATGG	5 cut(s)	152, 187, 357, 385, 739
NdeII	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
NlaIII	CATG	6 cut(s)	156, 191, 361, 389, 440, 743
NlaIV	GGNNCC	1 cut(s)	677
NmeAIII	GCCGAG	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	27, 117
PflFI	GACNNNGTC	1 cut(s)	664
PkrI	GCNGC	2 cut(s)	172, 622
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	16, 577
PspGI	CCWGG	2 cut(s)	16, 577
PspN4I	GGNNCC	1 cut(s)	677
PspXI	VCTCGAGB	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	193, 293
PsyI	GACNNNGTC	1 cut(s)	664
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	5 cut(s)	147, 506, 608, 792, 841
SatI	GCNGC	2 cut(s)	171, 621
Sau3AI	GATC	7 cut(s)	112, 183, 193, 293, 588, 640, 817
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	18, 579
SduI	GDGCHC	1 cut(s)	382
SfcI	CTRYAG	2 cut(s)	65, 636
Sfr274I	CTCGAG	1 cut(s)	240
SlaI	CTCGAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	240, 706
SmoI	CTYRAG	2 cut(s)	240, 706
Sse9I	AATT	5 cut(s)	319, 432, 515, 821, 829
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	16, 577
StyI	CCWWGG	5 cut(s)	152, 187, 357, 385, 739
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	506, 668
TaqI	TCGA	4 cut(s)	115, 241, 545, 668
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	5 cut(s)	319, 432, 515, 821, 829
TatI	WGTACW	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	27, 117
Tru1I	TTAA	5 cut(s)	147, 506, 608, 792, 841
Tru9I	TTAA	5 cut(s)	147, 506, 608, 792, 841
TscAI	CASTG	2 cut(s)	209, 310
TseI	GCWGC	2 cut(s)	170, 620
TspDTI	ATGAA	6 cut(s)	205, 425, 425, 429, 714, 813
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	209, 310
Tth111I	GACNNNGTC	1 cut(s)	664
XapI	RAATTY	2 cut(s)	515, 829
XhoI	CTCGAG	1 cut(s)	240
XmiI	GTMKAC	2 cut(s)	132, 534
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.