Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8258885.1

Orthogroup ID

OG0009699

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 525

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8258885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

atgtgccatggagatcaagagcagtggttcttcttcatcccaagacaagagagtgaagcacggggagggagacctaaacgactcactactactggatattggaaggcaactggttctccaagttatgttttcacttctagttccaacactaatcatggcgccatcggcctcaaaagaaccatggtcttctacactggtagagctcccaatggaagcaaaaccgagtggaagatgaatgagtataaagccattgatggagacaatcaacttcaagcaccttcatcatcaaacgccgcacctgctcctccgttaaggcaagaattcagtttatgccgagtgtacaagaaatcgaaatgcttaagggcatttgacagacgaccttcaggcactggggatatcatgcgcagacctacagttacagttcatttaccagctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

145

Amino Acids

16.28

Weight (kDa)

10.02

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19430
malus_domestica	MD12G1030200.v1.1 MD12G1030500.v1.1 MD14G1030700.v1.1 MD14G1030800.v1.1 MD14G1030900.v1.1 MD14G1031000.v1.1
prunus_persica	Prupe.7G102000_v2.0.a1
pyrus_communis	pycom12g02810 pycom12g02820 pycom14g02790
rosa_chinensis	RchiOBHm_Chr3g0474741
rosa_laevigata	RLG00000023900
rosa_multiflora	Rmu_co8258885.1_g000001 Rmu_sc0007062.1_g000020
rosa_roxburghii	Rroxscaffold_6G00406890
rosa_rugosa	Rorug03G0143000
rosa_samantha	Rh3AG193300 Rh3BG223100 Rh3CG217900 Rh3DG219100
rosa_wichuraiana	Rw3G017610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc16I	TGCGCA	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	1 cut(s)	341
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	203, 434
AluI	AGCT	2 cut(s)	203, 434
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	64, 252
AlwNI	CAGNNNCTG	1 cut(s)	389
AoxI	GGCC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	2 cut(s)	161, 405
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	205
BccI	CCATC	2 cut(s)	170, 248
BcoDI	GTCTC	2 cut(s)	64, 252
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	7, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse1I	ACTGG	4 cut(s)	97, 115, 199, 394
BseDI	CCNNGG	2 cut(s)	7, 180
BseGI	GGATG	1 cut(s)	36
BseNI	ACTGG	4 cut(s)	97, 115, 199, 394
BseRI	GAGGAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	64, 252
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	13
Bsp19I	CCATGG	2 cut(s)	7, 180
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	4 cut(s)	97, 115, 199, 394
BssECI	CCNNGG	2 cut(s)	7, 180
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	7, 180
Bst4CI	ACNGT	2 cut(s)	415, 421
BstACI	GRCGYC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	339
BstDSI	CCRYGG	2 cut(s)	7, 180
BstF5I	GGATG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	161, 405
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	2 cut(s)	64, 252
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 299
BstSFI	CTRYAG	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	2 cut(s)	7, 180
BtsCI	GGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	3 cut(s)	29, 192, 387
BveI	ACCTGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	389
CfoI	GCGC	2 cut(s)	161, 405
Csp6I	GTAC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	4 cut(s)	8, 155, 181, 400
CviJI	RGCY	4 cut(s)	168, 203, 248, 434
CviKI_1	RGCY	4 cut(s)	168, 203, 248, 434
CviQI	GTAC	1 cut(s)	340
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	7, 180
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	320
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	7, 180
EcoT38I	GRGCYC	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	2 cut(s)	7, 180
FaeI	CATG	4 cut(s)	11, 158, 184, 403
FaiI	YATR	7 cut(s)	9, 126, 156, 182, 243, 331, 401
FatI	CATG	4 cut(s)	7, 154, 180, 399
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	23
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	2 cut(s)	160, 404
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	2 cut(s)	161, 405
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	11, 158, 184, 403
Hin6I	GCGC	2 cut(s)	159, 403
HinP1I	GCGC	2 cut(s)	159, 403
HinfI	GANTC	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	3 cut(s)	97, 288, 390
HpyCH4III	ACNGT	2 cut(s)	415, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 299
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	11, 158, 184, 403
HspAI	GCGC	2 cut(s)	159, 403
KasI	GGCGCC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	208, 307
LpnPI	CCDG	6 cut(s)	78, 96, 180, 312, 369, 375
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	22, 25, 178, 241
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	3 cut(s)	59, 179, 315
MseI	TTAA	2 cut(s)	311, 359
MspA1I	CMGCKG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	358
MwoI	GCNNNNNNNGC	2 cut(s)	165, 299
NarI	GGCGCC	1 cut(s)	159
NcoI	CCATGG	2 cut(s)	7, 180
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	11, 158, 184, 403
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	359
NsbI	TGCGCA	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	311, 359
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	7 cut(s)	76, 205, 280, 301, 382, 412, 436
SfcI	CTRYAG	1 cut(s)	411
SfoI	GGCGCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	294
SspDI	GGCGCC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	7, 180
TaaI	ACNGT	2 cut(s)	415, 421
TaqI	TCGA	1 cut(s)	350
TasI	AATT	1 cut(s)	320
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	311, 359
Tru9I	TTAA	2 cut(s)	311, 359
TscAI	CASTG	3 cut(s)	29, 199, 394
TspDTI	ATGAA	4 cut(s)	25, 248, 270, 413
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	3 cut(s)	29, 199, 394
Vha464I	CTTAAG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.