FvH4_6g21131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009513
Physical Location & Seq
Reverse (-)
14717634 .. 14722394
4761 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21131.t1

Sequence Viewer

Length: 693 bp
ATGGCTGGGATTCCGGGATTTAGCAGCTTTGCACCTAAAACAAAGAATGTCATAGTTGCTGGGGGCTTGACATCTTTTGTCTTTGGTGTGTACTTCTACACCATGAGAGCTGTTGGAGGTACAGATGAACTACAAGTGGCTATAGATAAGTTTGAGGGAGACAAAGTCCAGAAACAGGCTGAAGGAAGCATGCCCTCAAAGAGGAATGTACCTTTCAATTTATACCTTACTGATCAAGGAAAACAGATCTCTGAAGCTTCCTCTCAAGATTCCAAACTCTCAGCCTTCGATTTAACAACTTTCTCTGATCAAGGAAAACATGTTGTAATCTTCTTGTGCTGCACGATGGCTTTCGAGGTTATAGATACTGGCAAGTATAATCTGATACTGCGAAGTAGCCATCTGATCTGGGAGTTGCAGCTGACTAGGTCCTGGGTTGAGAGTGGTAATGTATTAGCAATAGGCAGCAGAGGCACTAAAATGTTGATTCTCTGCGTTTTGACTATCACCCAACAATCGTGCAGATCCAAATCGTTGTCGGTAGATTGTAGTGTCAATAATACCTCTCGGGGTATTTTTGTTGTGCAAAGGGATTTGCCACCAGATGTCTTTGCCTTTCCTTTGCCATCAGCTGACAATCTGTTTGTGAAATTAACACTTTCATCAGATCAAAACCAATGCGCTCATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.17

Weight (kDa)

7.59

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa3_cc PF09813 13 - 38 2.2e-06 Cytochrome c oxidase assembly factor 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 519
AcuI CTGAAG 2 cut(s) 201, 273
AfaI GTAC 3 cut(s) 92, 121, 210
AfiI CCNNNNNNNGG 2 cut(s) 175, 201
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 5 cut(s) 27, 110, 257, 421, 632
AluI AGCT 5 cut(s) 27, 110, 257, 421, 632
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 1 cut(s) 519
Ama87I CYCGRG 1 cut(s) 567
ApeKI GCWGC 4 cut(s) 24, 339, 418, 465
ArsI GACNNNNNNTTYG 2 cut(s) 626, 658
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 1 cut(s) 429
BbvI GCAGC 4 cut(s) 36, 326, 430, 477
BccI CCATC 3 cut(s) 340, 408, 634
BciT130I CCWGG 1 cut(s) 433
BclI TGATCA 2 cut(s) 232, 307
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 1 cut(s) 141
BglII AGATCT 1 cut(s) 246
BisI GCNGC 4 cut(s) 25, 340, 419, 466
BlsI GCNGC 4 cut(s) 26, 341, 420, 467
Bme1390I CCNGG 2 cut(s) 15, 433
Bme18I GGWCC 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 1 cut(s) 429
BmrFI CCNGG 2 cut(s) 15, 433
BpuEI CTTGAG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 201
Bse1I ACTGG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 529
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 432
BseJI GATNNNNATC 1 cut(s) 529
BseLI CCNNNNNNNGG 2 cut(s) 175, 201
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 373
BseXI GCAGC 4 cut(s) 36, 326, 430, 477
BseYI CCCAGC 2 cut(s) 5, 59
BsgI GTGCAG 2 cut(s) 325, 541
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 175, 201
BsmAI GTCTC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 567
Bsp143I GATC 6 cut(s) 232, 246, 307, 405, 524, 667
BspCNI CTCAG 1 cut(s) 293
BspPI GGATC 1 cut(s) 519
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 6 cut(s) 232, 246, 307, 405, 524, 667
Bst2UI CCWGG 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 280
BstENI CCTNNNNNAGG 1 cut(s) 199
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 6 cut(s) 235, 249, 310, 408, 527, 670
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 6 cut(s) 232, 246, 307, 405, 524, 667
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 1 cut(s) 433
BstNSI RCATGY 2 cut(s) 193, 323
BstSCI CCNGG 2 cut(s) 13, 431
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 36, 326, 430, 477
BstX2I RGATCY 2 cut(s) 246, 524
BstYI RGATCY 2 cut(s) 246, 524
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 91, 120, 209
CviAII CATG 3 cut(s) 103, 190, 320
CviQI GTAC 3 cut(s) 91, 120, 209
DdeI CTNAG 1 cut(s) 280
DpnI GATC 6 cut(s) 234, 248, 309, 407, 526, 669
DpnII GATC 6 cut(s) 232, 246, 307, 405, 524, 667
Eco47I GGWCC 1 cut(s) 429
Eco57I CTGAAG 2 cut(s) 201, 273
Eco88I CYCGRG 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 431
FaeI CATG 3 cut(s) 106, 193, 323
FaiI YATR 8 cut(s) 53, 104, 143, 191, 223, 321, 362, 378
FatI CATG 3 cut(s) 102, 189, 319
FbaI TGATCA 2 cut(s) 232, 307
Fnu4HI GCNGC 4 cut(s) 25, 340, 419, 466
Fsp4HI GCNGC 4 cut(s) 25, 340, 419, 466
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 682
GluI GCNGC 4 cut(s) 25, 340, 419, 466
GsaI CCCAGC 2 cut(s) 9, 63
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 683
Hin1II CATG 3 cut(s) 106, 193, 323
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 3 cut(s) 10, 269, 487
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 5 cut(s) 253, 307, 384, 405, 667
Hpy188III TCNNGA 2 cut(s) 169, 266
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 176, 295
HpyCH4V TGCA 5 cut(s) 32, 342, 418, 522, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 1 cut(s) 280
Hsp92II CATG 3 cut(s) 106, 193, 323
HspAI GCGC 1 cut(s) 681
Ksp22I TGATCA 2 cut(s) 232, 307
Kzo9I GATC 6 cut(s) 232, 246, 307, 405, 524, 667
LpnPI CCDG 9 cut(s) 27, 45, 161, 182, 354, 394, 418, 445, 615
Lsp1109I GCAGC 4 cut(s) 36, 326, 430, 477
MaeI CTAG 1 cut(s) 426
MalI GATC 6 cut(s) 234, 248, 309, 407, 526, 669
MboI GATC 6 cut(s) 232, 246, 307, 405, 524, 667
MboII GAAGA 1 cut(s) 322
MflI RGATCY 2 cut(s) 246, 524
MluCI AATT 2 cut(s) 217, 650
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 8 cut(s) 110, 148, 195, 205, 271, 349, 464, 574
MseI TTAA 2 cut(s) 293, 653
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 421, 632
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 15, 433
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 15
NdeII GATC 6 cut(s) 232, 246, 307, 405, 524, 667
NlaIII CATG 3 cut(s) 106, 193, 323
NspI RCATGY 2 cut(s) 193, 323
PaeI GCATGC 1 cut(s) 193
PciI ACATGT 1 cut(s) 319
PfeI GAWTC 3 cut(s) 10, 269, 487
PflFI GACNNNGTC 2 cut(s) 164, 427
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 4 cut(s) 26, 341, 420, 467
PpuMI RGGWCCY 1 cut(s) 429
PscI ACATGT 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 431
PspFI CCCAGC 2 cut(s) 5, 59
PspGI CCWGG 1 cut(s) 431
PspPI GGNCC 1 cut(s) 429
PspPPI RGGWCCY 1 cut(s) 429
PsuI RGATCY 2 cut(s) 246, 524
PsyI GACNNNGTC 2 cut(s) 164, 427
PvuII CAGCTG 2 cut(s) 421, 632
RsaI GTAC 3 cut(s) 92, 121, 210
RsaNI GTAC 3 cut(s) 91, 120, 209
RseI CAYNNNNRTG 1 cut(s) 479
SaqAI TTAA 2 cut(s) 293, 653
SatI GCNGC 4 cut(s) 25, 340, 419, 466
Sau3AI GATC 6 cut(s) 232, 246, 307, 405, 524, 667
Sau96I GGNCC 1 cut(s) 429
ScrFI CCNGG 2 cut(s) 15, 433
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SphI GCATGC 1 cut(s) 193
Sse9I AATT 2 cut(s) 217, 650
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 2 cut(s) 13, 431
TaqI TCGA 2 cut(s) 288, 354
TasI AATT 2 cut(s) 217, 650
TatI WGTACW 1 cut(s) 90
TfiI GAWTC 3 cut(s) 10, 269, 487
Tru1I TTAA 2 cut(s) 293, 653
Tru9I TTAA 2 cut(s) 293, 653
TseI GCWGC 4 cut(s) 24, 339, 418, 465
TspDTI ATGAA 2 cut(s) 141, 651
Tth111I GACNNNGTC 2 cut(s) 164, 427
VpaK11BI GGWCC 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 199
XceI RCATGY 2 cut(s) 193, 323
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.