Rh4CG141600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009513
Physical Location & Seq
Forward (+)
28202110 .. 28210363
8254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG141600.1

Sequence Viewer

Length: 477 bp
ATGAGAAGCAGAGGAGGAGCGGAGCTCGGAGAGGGAGTAAGAGATAGTGAGATACCTAGAGCCTGGAGGAGGAGCTCGGAGACTGCAGAGGCGGACTGGCGGAGACGGATTGATGGTTGTAGCCTTGCAGACTTTGTTACGTTTCACAATTCAGATATGGCTGGGATTTCGGGATTTAGGAGCCTTGCACCTAAAACAAAGAATGTTATAGTTGCTGGGGGCTTGACAGCTTTTGTCTTTGGCGTGTACTTCTACACCATGAGAGCTGTTGGAGGTACAGATGAACTACAAGTGGCTATAGATAAGTTTGAGGGAGACAAAGTCCAGAAACAGGCTGAAGGAAGCATGCCGTCAAAGGAGAAGAAAGTGCAAGGGATTTTGGAGAAGAAGACAAGCCAAGTTCTTGATCCAATTCAAGACGTTTGTATATCCAATGTGGAAAATATATCTCACTTGTATCTTCAACTTCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.48

Weight (kDa)

6.84

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa3_cc PF09813 65 - 90 2.3e-07 Cytochrome c oxidase assembly factor 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 3 cut(s) 20, 92, 100
AclWI GGATC 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 2 cut(s) 248, 277
AfiI CCNNNNNNNGG 2 cut(s) 69, 331
AgsI TTSAA 3 cut(s) 416, 464, 470
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 4 cut(s) 25, 75, 230, 266
AluI AGCT 4 cut(s) 25, 75, 230, 266
Alw21I GWGCWC 2 cut(s) 27, 77
Alw26I GTCTC 3 cut(s) 74, 97, 309
AlwI GGATC 1 cut(s) 401
BanII GRGCYC 2 cut(s) 27, 77
BbsI GAAGAC 1 cut(s) 395
Bbv12I GWGCWC 2 cut(s) 27, 77
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 74, 97, 309
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 2 cut(s) 84, 297
Bme1390I CCNGG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpmI CTGGAG 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 306, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 331
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 69, 331
BseNI ACTGG 1 cut(s) 101
BseRI GAGGAG 4 cut(s) 27, 30, 82, 85
BseYI CCCAGC 2 cut(s) 161, 215
BsiHKAI GWGCWC 2 cut(s) 27, 77
BslI CCNNNNNNNGG 2 cut(s) 69, 331
BsmAI GTCTC 3 cut(s) 74, 97, 309
BsmBI CGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 27, 77
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 3 cut(s) 20, 92, 100
BspLI GGNNCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 401
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 101
BssMI GATC 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 347
BstENI CCTNNNNNAGG 1 cut(s) 67
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 3 cut(s) 74, 97, 309
BstMBI GATC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 2 cut(s) 84, 297
BstV2I GAAGAC 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 247, 276
CviAII CATG 2 cut(s) 259, 346
CviQI GTAC 2 cut(s) 247, 276
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
EciI GGCGGA 2 cut(s) 107, 115
Ecl136II GAGCTC 2 cut(s) 25, 75
Eco24I GRGCYC 2 cut(s) 27, 77
Eco53kI GAGCTC 2 cut(s) 25, 75
Eco57I CTGAAG 1 cut(s) 357
EcoICRI GAGCTC 2 cut(s) 25, 75
EcoNI CCTNNNNNAGG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 62
EcoT38I GRGCYC 2 cut(s) 27, 77
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 2 cut(s) 262, 349
FaiI YATR 7 cut(s) 158, 209, 260, 299, 347, 428, 446
FatI CATG 2 cut(s) 258, 345
FriOI GRGCYC 2 cut(s) 27, 77
FspBI CTAG 1 cut(s) 57
GsaI CCCAGC 2 cut(s) 165, 219
GsuI CTGGAG 1 cut(s) 85
Hin1II CATG 2 cut(s) 262, 349
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 29, 79, 154
Hpy188III TCNNGA 4 cut(s) 171, 325, 404, 416
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 332
HpyCH4IV ACGT 2 cut(s) 140, 420
HpyCH4V TGCA 4 cut(s) 86, 128, 188, 370
HpySE526I ACGT 2 cut(s) 140, 420
Hsp92II CATG 2 cut(s) 262, 349
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 4 cut(s) 17, 22, 72, 180
LpnPI CCDG 7 cut(s) 49, 76, 82, 147, 201, 317, 338
MaeI CTAG 1 cut(s) 57
MaeII ACGT 2 cut(s) 140, 420
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 408
MbiI CCGCTC 1 cut(s) 20
MboI GATC 1 cut(s) 406
MboII GAAGA 4 cut(s) 373, 397, 400, 452
MhlI GDGCHC 2 cut(s) 27, 77
MluCI AATT 2 cut(s) 148, 411
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 8 cut(s) 5, 8, 25, 60, 63, 82, 266, 304
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 262, 349
NlaIV GGNNCC 1 cut(s) 182
NspI RCATGY 1 cut(s) 349
PaeI GCATGC 1 cut(s) 349
PflFI GACNNNGTC 1 cut(s) 320
Psp124BI GAGCTC 2 cut(s) 27, 77
Psp6I CCWGG 1 cut(s) 62
PspFI CCCAGC 2 cut(s) 161, 215
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 2 cut(s) 248, 277
RsaNI GTAC 2 cut(s) 247, 276
SacI GAGCTC 2 cut(s) 27, 77
Sau3AI GATC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 27, 77
SetI ASST 9 cut(s) 27, 58, 77, 143, 193, 232, 268, 277, 423
SfcI CTRYAG 2 cut(s) 84, 297
SphI GCATGC 1 cut(s) 349
Sse9I AATT 2 cut(s) 148, 411
SsiI CCGC 3 cut(s) 20, 92, 100
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 2 cut(s) 27, 77
StyD4I CCNGG 1 cut(s) 62
TaiI ACGT 2 cut(s) 143, 423
TasI AATT 2 cut(s) 148, 411
TatI WGTACW 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 320
XagI CCTNNNNNAGG 1 cut(s) 67
XceI RCATGY 1 cut(s) 349
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.