Rh7AG426100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009513
Physical Location & Seq
Forward (+)
57222596 .. 57226548
3953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG426100.1

Sequence Viewer

Length: 390 bp
ATGGCAGGGTTCACAGAGATGCATACCTCTGTAACAATATATCCAGTTGATGCTAGAAGGGGAAGAAAAACTAAGCAAGCAGCTAGGACAGATGTTATACCAGCTGCAGTCTCTTTGATGGTTTTCTCTACCAACAGTAAAAGATCTGCAGCATTCAGAATACTAATGGGAAAACCCTGTCCGATGGCTGGGATTTCGGGATTTAGGAGCCTTGCACCTAAAACAAAGAATGTTATAGTTGCTGGGGGCTTGACAACTTTTGTCTTTGGCGTGTACTTCTACACCATGAGAGCTGTTGGAGGTATAGATGAACTACAAGTGGCTATAGATAAGTTTGAAGGAGACAAAGTCCAGAAACAGGCTGAAGGAAGCATGCCGTCAAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.96

Weight (kDa)

10.07

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coa3_cc PF09813 74 - 99 5e-07 Cytochrome c oxidase assembly factor 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 188, 358
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 3 cut(s) 83, 104, 293
AluI AGCT 3 cut(s) 83, 104, 293
Alw26I GTCTC 2 cut(s) 115, 336
ApeKI GCWGC 3 cut(s) 80, 104, 149
BbvI GCAGC 3 cut(s) 91, 92, 161
BccI CCATC 2 cut(s) 112, 178
BceAI ACGGC 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 115, 336
BfaI CTAG 2 cut(s) 54, 84
BfmI CTRYAG 3 cut(s) 105, 147, 324
BglII AGATCT 1 cut(s) 143
BisI GCNGC 3 cut(s) 81, 105, 150
BlsI GCNGC 3 cut(s) 82, 106, 151
BmiI GGNNCC 1 cut(s) 209
BmsI GCATC 2 cut(s) 9, 40
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 358
Bse1I ACTGG 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 188, 358
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 3 cut(s) 91, 92, 161
BseYI CCCAGC 2 cut(s) 188, 242
BslI CCNNNNNNNGG 2 cut(s) 188, 358
BsmAI GTCTC 2 cut(s) 115, 336
BsmI GAATGC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 209
BspMAI CTGCAG 2 cut(s) 109, 151
BsrI ACTGG 1 cut(s) 44
BssMI GATC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 78, 374
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 2 cut(s) 115, 336
BstMBI GATC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 376
BstSFI CTRYAG 3 cut(s) 105, 147, 324
BstV1I GCAGC 3 cut(s) 91, 92, 161
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 78, 374
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 286, 373
CviJI RGCY 8 cut(s) 83, 104, 188, 210, 249, 293, 323, 362
CviKI_1 RGCY 8 cut(s) 83, 104, 188, 210, 249, 293, 323, 362
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 24
FaeI CATG 2 cut(s) 289, 376
FaiI YATR 8 cut(s) 24, 40, 98, 236, 287, 305, 326, 374
FatI CATG 2 cut(s) 285, 372
Fnu4HI GCNGC 3 cut(s) 81, 105, 150
Fsp4HI GCNGC 3 cut(s) 81, 105, 150
FspBI CTAG 2 cut(s) 54, 84
GluI GCNGC 3 cut(s) 81, 105, 150
GsaI CCCAGC 2 cut(s) 192, 246
Hin1II CATG 2 cut(s) 289, 376
Hpy166II GTNNAC 2 cut(s) 12, 274
Hpy188I TCNGA 2 cut(s) 158, 183
Hpy188III TCNNGA 2 cut(s) 198, 352
Hpy8I GTNNAC 2 cut(s) 12, 274
HpyAV CCTTC 3 cut(s) 51, 332, 359
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 22, 107, 149, 215
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 2 cut(s) 289, 376
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 57, 114, 174, 190, 228, 344, 365
Lsp1109I GCAGC 3 cut(s) 91, 92, 161
LweI GCATC 2 cut(s) 9, 40
MaeI CTAG 2 cut(s) 54, 84
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 1 cut(s) 75
MflI RGATCY 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 2 cut(s) 37, 293
Mph1103I ATGCAT 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 152
NdeII GATC 1 cut(s) 143
NlaIII CATG 2 cut(s) 289, 376
NlaIV GGNNCC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PctI GAATGC 1 cut(s) 152
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 3 cut(s) 82, 106, 151
PspFI CCCAGC 2 cut(s) 188, 242
PspN4I GGNNCC 1 cut(s) 209
PstI CTGCAG 2 cut(s) 109, 151
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 17
SatI GCNGC 3 cut(s) 81, 105, 150
Sau3AI GATC 1 cut(s) 143
SetI ASST 6 cut(s) 29, 85, 106, 220, 295, 304
SfaNI GCATC 2 cut(s) 9, 40
SfcI CTRYAG 3 cut(s) 105, 147, 324
SmiMI CAYNNNNRTG 1 cut(s) 17
SphI GCATGC 1 cut(s) 376
SspMI CTAG 2 cut(s) 54, 84
TaaI ACNGT 1 cut(s) 137
TatI WGTACW 1 cut(s) 273
TseI GCWGC 3 cut(s) 80, 104, 149
TspDTI ATGAA 1 cut(s) 324
Tth111I GACNNNGTC 1 cut(s) 347
XceI RCATGY 1 cut(s) 376
XspI CTAG 2 cut(s) 54, 84
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.