Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g23520 |
| malus_domestica | MD12G1072400.v1.1 MD14G1069600.v1.1 |
| pyrus_communis | pycom12g06080 pycom14g05770 |
| rosa_chinensis | RchiOBHm_Chr3g0481521 |
| rosa_laevigata | RLG00000023390 |
| rosa_multiflora | Rmu_co8224982.1_g000001 Rmu_sc0010846.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00400370 |
| rosa_rugosa | Rorug03G0192400 |
| rosa_samantha | Rh3AG243600 Rh3BG278500 Rh3CG273700 Rh3DG270500 |
| rosa_wichuraiana | Rw3G021760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 926, 2293 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1205 |
| AatII | GACGTC | 1 cut(s) | 1165 |
| Acc36I | ACCTGC | 1 cut(s) | 2117 |
| AccB1I | GGYRCC | 2 cut(s) | 279, 1658 |
| AccBSI | CCGCTC | 1 cut(s) | 35 |
| AciI | CCGC | 4 cut(s) | 33, 585, 1013, 1316 |
| AclWI | GGATC | 4 cut(s) | 785, 798, 1345, 2279 |
| AcsI | RAATTY | 5 cut(s) | 1167, 1868, 1963, 1969, 2205 |
| AcvI | CACGTG | 1 cut(s) | 399 |
| AcyI | GRCGYC | 2 cut(s) | 657, 1162 |
| AfaI | GTAC | 4 cut(s) | 632, 686, 1028, 1077 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1248, 1425 |
| AflIII | ACRYGT | 1 cut(s) | 1348 |
| AjnI | CCWGG | 3 cut(s) | 360, 1616, 2274 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 894, 926 |
| Alw21I | GWGCWC | 1 cut(s) | 1830 |
| AlwI | GGATC | 4 cut(s) | 785, 798, 1345, 2279 |
| AoxI | GGCC | 5 cut(s) | 197, 249, 732, 856, 960 |
| ApeKI | GCWGC | 3 cut(s) | 589, 2078, 2133 |
| ApoI | RAATTY | 5 cut(s) | 1167, 1868, 1963, 1969, 2205 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 587, 619 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 561, 668, 1575 |
| AspLEI | GCGC | 1 cut(s) | 104 |
| AspS9I | GGNCC | 3 cut(s) | 225, 1815, 2185 |
| AsuC2I | CCSGG | 2 cut(s) | 115, 427 |
| AsuHPI | GGTGA | 3 cut(s) | 73, 686, 1908 |
| AvaII | GGWCC | 3 cut(s) | 225, 1815, 2185 |
| BamHI | GGATCC | 1 cut(s) | 790 |
| BanI | GGYRCC | 2 cut(s) | 279, 1658 |
| BbrPI | CACGTG | 1 cut(s) | 399 |
| BbsI | GAAGAC | 1 cut(s) | 1469 |
| Bbv12I | GWGCWC | 1 cut(s) | 1830 |
| BbvCI | CCTCAGC | 2 cut(s) | 201, 1446 |
| BbvI | GCAGC | 3 cut(s) | 576, 2065, 2145 |
| BccI | CCATC | 2 cut(s) | 1274, 2196 |
| BceAI | ACGGC | 1 cut(s) | 1442 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 298, 332 |
| BciT130I | CCWGG | 3 cut(s) | 362, 1618, 2276 |
| BciVI | GTATCC | 2 cut(s) | 55, 1624 |
| BcnI | CCSGG | 2 cut(s) | 115, 427 |
| BfaI | CTAG | 5 cut(s) | 636, 1085, 1104, 1322, 1812 |
| BfmI | CTRYAG | 2 cut(s) | 590, 1521 |
| BfuAI | ACCTGC | 1 cut(s) | 2117 |
| BfuI | GTATCC | 2 cut(s) | 55, 1624 |
| BisI | GCNGC | 3 cut(s) | 590, 2079, 2134 |
| BlsI | GCNGC | 3 cut(s) | 591, 2080, 2135 |
| Bme1390I | CCNGG | 5 cut(s) | 115, 362, 427, 1618, 2276 |
| Bme18I | GGWCC | 3 cut(s) | 225, 1815, 2185 |
| BmgT120I | GGNCC | 3 cut(s) | 225, 1815, 2185 |
| BmiI | GGNNCC | 7 cut(s) | 119, 281, 792, 1253, 1430, 1660, 2010 |
| BmrFI | CCNGG | 5 cut(s) | 115, 362, 427, 1618, 2276 |
| BmrI | ACTGGG | 1 cut(s) | 1779 |
| BmsI | GCATC | 5 cut(s) | 343, 452, 1117, 1351, 1911 |
| BmuI | ACTGGG | 1 cut(s) | 1779 |
| BpiI | GAAGAC | 1 cut(s) | 1469 |
| BpmI | CTGGAG | 3 cut(s) | 194, 1004, 2076 |
| Bpu10I | CCTNAGC | 3 cut(s) | 201, 1433, 1446 |
| BpuEI | CTTGAG | 2 cut(s) | 1090, 2021 |
| BpuMI | CCSGG | 2 cut(s) | 115, 427 |
| BsaAI | YACGTR | 2 cut(s) | 43, 399 |
| BsaHI | GRCGYC | 2 cut(s) | 657, 1162 |
| BsaJI | CCNNGG | 4 cut(s) | 113, 304, 426, 1881 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1248, 1425 |
| Bse118I | RCCGGY | 3 cut(s) | 276, 734, 858 |
| Bse1I | ACTGG | 4 cut(s) | 200, 987, 1275, 1774 |
| BseBI | CCWGG | 3 cut(s) | 362, 1618, 2276 |
| BseDI | CCNNGG | 4 cut(s) | 113, 304, 426, 1881 |
| BseGI | GGATG | 5 cut(s) | 358, 954, 1066, 1366, 2188 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1248, 1425 |
| BseMII | CTCAG | 4 cut(s) | 215, 767, 1149, 1437 |
| BseNI | ACTGG | 4 cut(s) | 200, 987, 1275, 1774 |
| BseRI | GAGGAG | 3 cut(s) | 197, 1001, 2073 |
| BseXI | GCAGC | 3 cut(s) | 576, 2065, 2145 |
| BseYI | CCCAGC | 3 cut(s) | 461, 1862, 2021 |
| BsgI | GTGCAG | 3 cut(s) | 850, 869, 1162 |
| BshFI | GGCC | 5 cut(s) | 199, 251, 734, 858, 962 |
| BshNI | GGYRCC | 2 cut(s) | 279, 1658 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1830 |
| BsiSI | CCGG | 5 cut(s) | 115, 277, 426, 735, 859 |
| BslFI | GGGAC | 4 cut(s) | 479, 1173, 1231, 1822 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1248, 1425 |
| BsmFI | GGGAC | 4 cut(s) | 479, 1173, 1231, 1822 |
| BsmI | GAATGC | 2 cut(s) | 299, 1627 |
| BsnI | GGCC | 5 cut(s) | 199, 251, 734, 858, 962 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1830 |
| Bsp143I | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| Bsp19I | CCATGG | 1 cut(s) | 1881 |
| BspACI | CCGC | 4 cut(s) | 33, 585, 1013, 1316 |
| BspANI | GGCC | 5 cut(s) | 199, 251, 734, 858, 962 |
| BspCNI | CTCAG | 4 cut(s) | 214, 768, 1148, 1438 |
| BspHI | TCATGA | 2 cut(s) | 411, 2254 |
| BspLI | GGNNCC | 7 cut(s) | 119, 281, 792, 1253, 1430, 1660, 2010 |
| BspMAI | CTGCAG | 1 cut(s) | 594 |
| BspMI | ACCTGC | 1 cut(s) | 2117 |
| BspPI | GGATC | 4 cut(s) | 785, 798, 1345, 2279 |
| BspQI | GCTCTTC | 1 cut(s) | 1650 |
| BspT107I | GGYRCC | 2 cut(s) | 279, 1658 |
| BsrBI | CCGCTC | 1 cut(s) | 35 |
| BsrFI | RCCGGY | 3 cut(s) | 276, 734, 858 |
| BsrI | ACTGG | 4 cut(s) | 200, 987, 1275, 1774 |
| BssAI | RCCGGY | 3 cut(s) | 276, 734, 858 |
| BssECI | CCNNGG | 4 cut(s) | 113, 304, 426, 1881 |
| BssMI | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| BssNI | GRCGYC | 2 cut(s) | 657, 1162 |
| BssT1I | CCWWGG | 2 cut(s) | 304, 1881 |
| Bst2UI | CCWGG | 3 cut(s) | 362, 1618, 2276 |
| Bst4CI | ACNGT | 3 cut(s) | 1522, 2095, 2252 |
| Bst6I | CTCTTC | 5 cut(s) | 97, 191, 951, 1350, 1650 |
| BstACI | GRCGYC | 2 cut(s) | 657, 1162 |
| BstBAI | YACGTR | 2 cut(s) | 43, 399 |
| BstC8I | GCNNGC | 9 cut(s) | 358, 587, 829, 860, 876, 1132, 1396, 1456, 1744 |
| BstDEI | CTNAG | 6 cut(s) | 201, 265, 776, 1135, 1433, 1446 |
| BstDSI | CCRYGG | 1 cut(s) | 1881 |
| BstF5I | GGATG | 5 cut(s) | 358, 954, 1066, 1366, 2188 |
| BstHHI | GCGC | 1 cut(s) | 104 |
| BstKTI | GATC | 9 cut(s) | 772, 793, 1002, 1084, 1340, 1667, 1849, 2269, 2287 |
| BstMBI | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 211, 257, 541, 1140, 1322, 1451, 1496 |
| BstNI | CCWGG | 3 cut(s) | 362, 1618, 2276 |
| BstNSI | RCATGY | 2 cut(s) | 1352, 1954 |
| BstSCI | CCNGG | 5 cut(s) | 113, 360, 425, 1616, 2274 |
| BstSFI | CTRYAG | 2 cut(s) | 590, 1521 |
| BstSNI | TACGTA | 1 cut(s) | 43 |
| BstV1I | GCAGC | 3 cut(s) | 576, 2065, 2145 |
| BstV2I | GAAGAC | 1 cut(s) | 1469 |
| BstX2I | RGATCY | 2 cut(s) | 790, 2284 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 619 |
| BstYI | RGATCY | 2 cut(s) | 790, 2284 |
| BsuI | GTATCC | 2 cut(s) | 55, 1624 |
| BsuRI | GGCC | 5 cut(s) | 199, 251, 734, 858, 962 |
| BtgI | CCRYGG | 1 cut(s) | 1881 |
| BtsCI | GGATG | 5 cut(s) | 358, 954, 1066, 1366, 2188 |
| BtsI | GCAGTG | 1 cut(s) | 838 |
| BtsIMutI | CAGTG | 5 cut(s) | 704, 829, 838, 980, 1518 |
| BveI | ACCTGC | 1 cut(s) | 2117 |
| Cac8I | GCNNGC | 9 cut(s) | 358, 587, 829, 860, 876, 1132, 1396, 1456, 1744 |
| CciI | TCATGA | 2 cut(s) | 411, 2254 |
| CfoI | GCGC | 1 cut(s) | 104 |
| Cfr10I | RCCGGY | 3 cut(s) | 276, 734, 858 |
| Cfr13I | GGNCC | 3 cut(s) | 225, 1815, 2185 |
| CseI | GACGC | 2 cut(s) | 305, 665 |
| Csp6I | GTAC | 4 cut(s) | 631, 685, 1027, 1076 |
| CviQI | GTAC | 4 cut(s) | 631, 685, 1027, 1076 |
| DdeI | CTNAG | 6 cut(s) | 201, 265, 776, 1135, 1433, 1446 |
| DpnI | GATC | 9 cut(s) | 771, 792, 1001, 1083, 1339, 1666, 1848, 2268, 2286 |
| DpnII | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1205 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1205 |
| Eam1104I | CTCTTC | 5 cut(s) | 97, 191, 951, 1350, 1650 |
| EarI | CTCTTC | 5 cut(s) | 97, 191, 951, 1350, 1650 |
| Eco105I | TACGTA | 1 cut(s) | 43 |
| Eco130I | CCWWGG | 2 cut(s) | 304, 1881 |
| Eco47I | GGWCC | 3 cut(s) | 225, 1815, 2185 |
| Eco72I | CACGTG | 1 cut(s) | 399 |
| EcoRII | CCWGG | 3 cut(s) | 360, 1616, 2274 |
| EcoT14I | CCWWGG | 2 cut(s) | 304, 1881 |
| ErhI | CCWWGG | 2 cut(s) | 304, 1881 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1488, 1520 |
| FaqI | GGGAC | 4 cut(s) | 479, 1173, 1231, 1822 |
| FauI | CCCGC | 2 cut(s) | 40, 578 |
| FauNDI | CATATG | 1 cut(s) | 1639 |
| Fnu4HI | GCNGC | 3 cut(s) | 590, 2079, 2134 |
| FokI | GGATG | 5 cut(s) | 365, 961, 1073, 1373, 2175 |
| Fsp4HI | GCNGC | 3 cut(s) | 590, 2079, 2134 |
| FspBI | CTAG | 5 cut(s) | 636, 1085, 1104, 1322, 1812 |
| GlaI | GCGC | 1 cut(s) | 103 |
| GluI | GCNGC | 3 cut(s) | 590, 2079, 2134 |
| GsaI | CCCAGC | 3 cut(s) | 465, 1866, 2025 |
| GsuI | CTGGAG | 3 cut(s) | 194, 1004, 2076 |
| HaeIII | GGCC | 5 cut(s) | 199, 251, 734, 858, 962 |
| HapII | CCGG | 5 cut(s) | 115, 277, 426, 735, 859 |
| HgaI | GACGC | 2 cut(s) | 305, 665 |
| HhaI | GCGC | 1 cut(s) | 104 |
| Hin1I | GRCGYC | 2 cut(s) | 657, 1162 |
| Hin6I | GCGC | 1 cut(s) | 102 |
| HinP1I | GCGC | 1 cut(s) | 102 |
| HindIII | AAGCTT | 2 cut(s) | 1572, 1740 |
| HinfI | GANTC | 8 cut(s) | 1100, 1199, 1329, 1409, 1474, 1913, 2221, 2233 |
| HpaII | CCGG | 5 cut(s) | 115, 277, 426, 735, 859 |
| HphI | GGTGA | 3 cut(s) | 73, 686, 1908 |
| Hpy166II | GTNNAC | 2 cut(s) | 402, 2116 |
| Hpy188I | TCNGA | 3 cut(s) | 777, 1138, 1876 |
| Hpy8I | GTNNAC | 2 cut(s) | 402, 2116 |
| Hpy99I | CGWCG | 2 cut(s) | 299, 659 |
| HpyCH4III | ACNGT | 3 cut(s) | 1522, 2095, 2252 |
| HpyCH4IV | ACGT | 5 cut(s) | 42, 398, 1029, 1162, 1721 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 211, 257, 541, 1140, 1322, 1451, 1496 |
| HpyF3I | CTNAG | 6 cut(s) | 201, 265, 776, 1135, 1433, 1446 |
| HpySE526I | ACGT | 5 cut(s) | 42, 398, 1029, 1162, 1721 |
| Hsp92I | GRCGYC | 2 cut(s) | 657, 1162 |
| HspAI | GCGC | 1 cut(s) | 102 |
| KroI | GCCGGC | 1 cut(s) | 858 |
| KroNI | GCCGGC | 1 cut(s) | 860 |
| Kzo9I | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| LguI | GCTCTTC | 1 cut(s) | 1650 |
| LmnI | GCTCC | 5 cut(s) | 141, 210, 1434, 1711, 1795 |
| Lsp1109I | GCAGC | 3 cut(s) | 576, 2065, 2145 |
| LweI | GCATC | 5 cut(s) | 343, 452, 1117, 1351, 1911 |
| MaeI | CTAG | 5 cut(s) | 636, 1085, 1104, 1322, 1812 |
| MaeII | ACGT | 5 cut(s) | 42, 398, 1029, 1162, 1721 |
| MaeIII | GTNAC | 4 cut(s) | 641, 674, 1180, 1748 |
| MalI | GATC | 9 cut(s) | 771, 792, 1001, 1083, 1339, 1666, 1848, 2268, 2286 |
| MbiI | CCGCTC | 1 cut(s) | 35 |
| MboI | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| MfeI | CAATTG | 1 cut(s) | 753 |
| MflI | RGATCY | 2 cut(s) | 790, 2284 |
| MhlI | GDGCHC | 1 cut(s) | 1830 |
| MlyI | GAGTC | 3 cut(s) | 1193, 1483, 1907 |
| MmeI | TCCRAC | 3 cut(s) | 42, 892, 1986 |
| MroNI | GCCGGC | 1 cut(s) | 858 |
| MroXI | GAANNNNTTC | 3 cut(s) | 561, 668, 1575 |
| MseI | TTAA | 4 cut(s) | 492, 705, 1377, 1937 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1347 |
| MspA1I | CMGCKG | 2 cut(s) | 1013, 2136 |
| MspI | CCGG | 5 cut(s) | 115, 277, 426, 735, 859 |
| MspR9I | CCNGG | 5 cut(s) | 115, 362, 427, 1618, 2276 |
| MunI | CAATTG | 1 cut(s) | 753 |
| Mva1269I | GAATGC | 2 cut(s) | 299, 1627 |
| MvaI | CCWGG | 3 cut(s) | 362, 1618, 2276 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 211, 257, 541, 1140, 1322, 1451, 1496 |
| NaeI | GCCGGC | 1 cut(s) | 860 |
| NciI | CCSGG | 2 cut(s) | 115, 427 |
| NcoI | CCATGG | 1 cut(s) | 1881 |
| NdeI | CATATG | 1 cut(s) | 1639 |
| NdeII | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| NgoMIV | GCCGGC | 1 cut(s) | 858 |
| NlaIV | GGNNCC | 7 cut(s) | 119, 281, 792, 1253, 1430, 1660, 2010 |
| NmeAIII | GCCGAG | 1 cut(s) | 685 |
| NmuCI | GTSAC | 2 cut(s) | 641, 674 |
| NspI | RCATGY | 2 cut(s) | 1352, 1954 |
| PagI | TCATGA | 2 cut(s) | 411, 2254 |
| PciI | ACATGT | 1 cut(s) | 1348 |
| PciSI | GCTCTTC | 1 cut(s) | 1650 |
| PctI | GAATGC | 2 cut(s) | 299, 1627 |
| PdiI | GCCGGC | 1 cut(s) | 860 |
| PdmI | GAANNNNTTC | 3 cut(s) | 561, 668, 1575 |
| PfeI | GAWTC | 5 cut(s) | 1100, 1329, 1409, 2221, 2233 |
| PflFI | GACNNNGTC | 1 cut(s) | 1813 |
| PfoI | TCCNGGA | 1 cut(s) | 1616 |
| PkrI | GCNGC | 3 cut(s) | 591, 2080, 2135 |
| PleI | GAGTC | 3 cut(s) | 1193, 1482, 1907 |
| PmaCI | CACGTG | 1 cut(s) | 399 |
| PmlI | CACGTG | 1 cut(s) | 399 |
| PpsI | GAGTC | 3 cut(s) | 1193, 1482, 1907 |
| Ppu21I | YACGTR | 2 cut(s) | 43, 399 |
| PscI | ACATGT | 1 cut(s) | 1348 |
| PsiI | TTATAA | 2 cut(s) | 926, 2293 |
| Psp6I | CCWGG | 3 cut(s) | 360, 1616, 2274 |
| PspCI | CACGTG | 1 cut(s) | 399 |
| PspFI | CCCAGC | 3 cut(s) | 461, 1862, 2021 |
| PspGI | CCWGG | 3 cut(s) | 360, 1616, 2274 |
| PspN4I | GGNNCC | 7 cut(s) | 119, 281, 792, 1253, 1430, 1660, 2010 |
| PspPI | GGNCC | 3 cut(s) | 225, 1815, 2185 |
| PstI | CTGCAG | 1 cut(s) | 594 |
| PsuI | RGATCY | 2 cut(s) | 790, 2284 |
| PsyI | GACNNNGTC | 1 cut(s) | 1813 |
| PvuII | CAGCTG | 1 cut(s) | 2136 |
| RsaI | GTAC | 4 cut(s) | 632, 686, 1028, 1077 |
| RsaNI | GTAC | 4 cut(s) | 631, 685, 1027, 1076 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1347 |
| SapI | GCTCTTC | 1 cut(s) | 1650 |
| SaqAI | TTAA | 4 cut(s) | 492, 705, 1377, 1937 |
| SatI | GCNGC | 3 cut(s) | 590, 2079, 2134 |
| Sau3AI | GATC | 9 cut(s) | 769, 790, 999, 1081, 1337, 1664, 1846, 2266, 2284 |
| Sau96I | GGNCC | 3 cut(s) | 225, 1815, 2185 |
| SchI | GAGTC | 3 cut(s) | 1193, 1483, 1907 |
| ScrFI | CCNGG | 5 cut(s) | 115, 362, 427, 1618, 2276 |
| SduI | GDGCHC | 1 cut(s) | 1830 |
| SfaNI | GCATC | 5 cut(s) | 343, 452, 1117, 1351, 1911 |
| SfcI | CTRYAG | 2 cut(s) | 590, 1521 |
| SinI | GGWCC | 3 cut(s) | 225, 1815, 2185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1347 |
| SmlI | CTYRAG | 2 cut(s) | 1069, 2000 |
| SmoI | CTYRAG | 2 cut(s) | 1069, 2000 |
| SnaBI | TACGTA | 1 cut(s) | 43 |
| SsiI | CCGC | 4 cut(s) | 33, 585, 1013, 1316 |
| SspMI | CTAG | 5 cut(s) | 636, 1085, 1104, 1322, 1812 |
| StyD4I | CCNGG | 5 cut(s) | 113, 360, 425, 1616, 2274 |
| StyI | CCWWGG | 2 cut(s) | 304, 1881 |
| TaaI | ACNGT | 3 cut(s) | 1522, 2095, 2252 |
| TaiI | ACGT | 5 cut(s) | 45, 401, 1032, 1165, 1724 |
| TaqI | TCGA | 5 cut(s) | 332, 369, 454, 1278, 1845 |
| TaqII | GACCGA | 1 cut(s) | 233 |
| TatI | WGTACW | 3 cut(s) | 630, 684, 1075 |
| TfiI | GAWTC | 5 cut(s) | 1100, 1329, 1409, 2221, 2233 |
| Tru1I | TTAA | 4 cut(s) | 492, 705, 1377, 1937 |
| Tru9I | TTAA | 4 cut(s) | 492, 705, 1377, 1937 |
| TscAI | CASTG | 5 cut(s) | 704, 829, 838, 987, 1525 |
| TseFI | GTSAC | 2 cut(s) | 641, 674 |
| TseI | GCWGC | 3 cut(s) | 589, 2078, 2133 |
| Tsp45I | GTSAC | 2 cut(s) | 641, 674 |
| TspGWI | ACGGA | 2 cut(s) | 1728, 1807 |
| TspRI | CASTG | 5 cut(s) | 704, 829, 838, 987, 1525 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1813 |
| VpaK11BI | GGWCC | 3 cut(s) | 225, 1815, 2185 |
| XapI | RAATTY | 5 cut(s) | 1167, 1868, 1963, 1969, 2205 |
| XbaI | TCTAGA | 1 cut(s) | 635 |
| XceI | RCATGY | 2 cut(s) | 1352, 1954 |
| XmnI | GAANNNNTTC | 3 cut(s) | 561, 668, 1575 |
| XspI | CTAG | 5 cut(s) | 636, 1085, 1104, 1322, 1812 |
| ZraI | GACGTC | 1 cut(s) | 1163 |