RchiOBHm_Chr3g0481521

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015659
Physical Location & Seq
Reverse (-)
27551433 .. 27553389
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44647

Sequence Viewer

Length: 1608 bp
ATGGATACCCTTCTCTCTAACTCCTTGCTTCCCGCTCTTTACGTACCCCAACGACCCTTCCCTCCATTGAAGAACACCATCAGCAAGTCCTCTTCAATCCGAAACCCAAAACCCAAGTCACTCCATTTTTCTACCAACTCAACTCTTCCGGCCTCTCCACAAGAAGCACAACACAGCCTTCTCTTCAATGAATGGCCTCAGCTCCTCAAATTCTCAATTGGGTCCAAAAATCTGATGCTGGGTCAGGCAATTCATGCCTTCTTACTCAAATGCCGGTGCCAAACTGACACCGACACATTTCAAGGCAACAATCTCGTCAACTTGTACTCGAAATTCAAAAGATTGGATGATGCACACCGGGTATTCGATGAAATGCCTGAGAGAAACACAATCACTTGGACTACTCTAATGAAGGGGTATTCTGAGGTTGGCGATTATGCATCTCTTTTTCGCATTGCTGGGGACATGTTTCAGGGAGAGGAGAAGTTTAATGAGCATACTTGCTCTGTGATTTTGGAGGCGTGTGGTTCACTAGAAGAGTCAAGACGTGGGGAACAGGTTCATGGTTTTGTTGTAAAAAGTGGGCTTCAGGACAACGTTTTTGTAGCTACTTCATTGGTCTCTATGTACTCTAGAAGTGACTGCTTGGGCAATGCCGAGAAAGTGTTCAGTGACATGGATTACAAAGATATTCAGTGCTTAAATTATATGATTTTAGAATATGGGAGGGCCGGCCTCGGAGAGAAAGCAATTGGGGTTTTTATTGATCTTCTGAGTTCTGGTATAGATCCAAATGATTATACATTTACTAATTTAATCAGTGCATGCAGTGGAGATGTGGGTGTGCATGAAGGCCAGCAATTACATGGGCTCGCTCTGAAGTATGGAATTATGTGTGAAACTTCTGTTGGAAATGCAGTTATAACAATGTATGGAAAGCATGGGATGATTGAAGAGGCCGAGACAATGTTCCATGCACTGGATGAGAGGAACTTGATCTCTTGGACAGCTGTTTTATCAATGTATGTCAAAAATGGCCCTGTTTATAAGGCTCTGGATGTTTTCTTGAAAGTACTTGATCTAGGCATTCATTGTGATTCTAGTTTTTTATGTACTATTCTTGATGCCTGCTCAGAGTGCAGAAATCTGGAATTGGGACGTCAAATCCACGCGTGTGTTACAAAACTTGGTTATTACTCTGGTGTTCATGTTGGGACAGCTTTGATAGACATATATGCCAAATGTGGGAACTTTCAATCTGCAAGACGGGTTTTCGATGGTCTTTCAGGTAAAAATACTGCCTCACTCAATGCAGTTCTGGCTGGATTCATGGAATCACATATACATGTTAAAGACGATCCCATTGTCTTATTTAATCAATCAAGATATGCTGGTATAATTCCTGATTCCATAACTTTTTCACGGCTCCTTAGCTTGTCTGCTGAGGAAGCCTGCTTGGTTATGGGTAAGAGTCTTCATTCTTATGCTATCAAAGCTGGACTTGAAGCCAATTCCACTGTAGGTAATGCTATAATTACCATGTATGCCAAATGTGGTAGCATTGAAGAAGCTTTTCAAATGTTCAATGGAAGAAGGTTTTGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

535

Amino Acids

59.09

Weight (kDa)

5.98

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 230 - 276 3.8e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015659)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23520
malus_domestica MD12G1072400.v1.1 MD14G1069600.v1.1
pyrus_communis pycom12g06080 pycom14g05770
rosa_chinensis RchiOBHm_Chr3g0481521
rosa_laevigata RLG00000023390
rosa_multiflora Rmu_co8224982.1_g000001 Rmu_sc0010846.1_g000006
rosa_roxburghii Rroxscaffold_6G00400370
rosa_rugosa Rorug03G0192400
rosa_samantha Rh3AG243600 Rh3BG278500 Rh3CG273700 Rh3DG270500
rosa_wichuraiana Rw3G021760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 923, 1047
AatII GACGTC 1 cut(s) 1162
AccB1I GGYRCC 1 cut(s) 276
AccB7I CCANNNNNTGG 1 cut(s) 979
AccBSI CCGCTC 1 cut(s) 35
AccII CGCG 1 cut(s) 1172
AciI CCGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 597
AclWI GGATC 2 cut(s) 782, 1352
AcsI RAATTY 2 cut(s) 209, 332
AcuI CTGAAG 2 cut(s) 572, 899
AcyI GRCGYC 1 cut(s) 1159
AfaI GTAC 5 cut(s) 45, 326, 629, 1074, 1114
AfiI CCNNNNNNNGG 2 cut(s) 979, 1245
AflIII ACRYGT 3 cut(s) 465, 1170, 1345
AjiI CACGTC 1 cut(s) 548
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
AleI CACNNNNGTG 1 cut(s) 1173
AluBI AGCT 7 cut(s) 202, 608, 1010, 1220, 1434, 1496, 1571
AluI AGCT 7 cut(s) 202, 608, 1010, 1220, 1434, 1496, 1571
Alw26I GTCTC 2 cut(s) 625, 956
AlwI GGATC 2 cut(s) 782, 1352
AoxI GGCC 7 cut(s) 150, 194, 729, 733, 853, 957, 1036
ApoI RAATTY 2 cut(s) 209, 332
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 584, 616
Asp700I GAANNNNTTC 3 cut(s) 558, 665, 1572
AspS9I GGNCC 3 cut(s) 222, 729, 1037
AsuC2I CCSGG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 222
BanI GGYRCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 1466
BbvCI CCTCAGC 2 cut(s) 198, 1443
BccI CCATC 2 cut(s) 86, 1271
BceAI ACGGC 1 cut(s) 1439
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 625, 956
BfaI CTAG 4 cut(s) 533, 633, 1082, 1101
BfmI CTRYAG 1 cut(s) 1518
BmcAI AGTACT 1 cut(s) 1074
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 222
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 3 cut(s) 222, 729, 1037
BmiI GGNNCC 3 cut(s) 223, 278, 1427
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 4 cut(s) 225, 340, 449, 1114
BpiI GAAGAC 1 cut(s) 1466
Bpu10I CCTNAGC 3 cut(s) 198, 1430, 1443
BpuMI CCSGG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 1159
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 736
Bsc4I CCNNNNNNNGG 2 cut(s) 979, 1245
Bse118I RCCGGY 2 cut(s) 273, 731
Bse1I ACTGG 1 cut(s) 984
Bse3DI GCAATG 2 cut(s) 453, 658
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 4 cut(s) 352, 951, 988, 1063
BseLI CCNNNNNNNGG 2 cut(s) 979, 1245
BseMI GCAATG 2 cut(s) 453, 658
BseMII CTCAG 6 cut(s) 212, 369, 414, 764, 1146, 1434
BseNI ACTGG 1 cut(s) 984
BseRI GAGGAG 2 cut(s) 194, 494
BseYI CCCAGC 2 cut(s) 238, 458
BsgI GTGCAG 1 cut(s) 1159
Bsh1236I CGCG 1 cut(s) 1172
BshFI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
BshNI GGYRCC 1 cut(s) 276
BsiSI CCGG 4 cut(s) 149, 274, 358, 732
BslFI GGGAC 3 cut(s) 476, 1170, 1228
BslI CCNNNNNNNGG 2 cut(s) 979, 1245
BsmAI GTCTC 2 cut(s) 625, 956
BsmFI GGGAC 3 cut(s) 476, 1170, 1228
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
Bso31I GGTCTC 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 873
Bsp143I GATC 5 cut(s) 766, 787, 996, 1078, 1357
BspACI CCGC 1 cut(s) 33
BspANI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
BspCNI CTCAG 6 cut(s) 211, 370, 415, 765, 1145, 1435
BspFNI CGCG 1 cut(s) 1172
BspLI GGNNCC 3 cut(s) 223, 278, 1427
BspPI GGATC 2 cut(s) 782, 1352
BspT107I GGYRCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 453, 658
BsrFI RCCGGY 2 cut(s) 273, 731
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 2 cut(s) 273, 731
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 5 cut(s) 766, 787, 996, 1078, 1357
BssNI GRCGYC 1 cut(s) 1159
Bst4CI ACNGT 1 cut(s) 1519
Bst6I CTCTTC 5 cut(s) 97, 150, 188, 531, 948
BstACI GRCGYC 1 cut(s) 1159
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 6 cut(s) 733, 826, 857, 873, 1129, 1453
BstDEI CTNAG 7 cut(s) 198, 378, 423, 773, 1132, 1430, 1443
BstF5I GGATG 4 cut(s) 352, 951, 988, 1063
BstFNI CGCG 1 cut(s) 1172
BstKTI GATC 5 cut(s) 769, 790, 999, 1081, 1360
BstMAI GTCTC 2 cut(s) 625, 956
BstMBI GATC 5 cut(s) 766, 787, 996, 1078, 1357
BstMWI GCNNNNNNNGC 5 cut(s) 254, 1137, 1319, 1448, 1493
BstNSI RCATGY 3 cut(s) 469, 828, 1349
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 1518
BstSNI TACGTA 1 cut(s) 43
BstUI CGCG 1 cut(s) 1172
BstV2I GAAGAC 1 cut(s) 1466
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BsuRI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 4 cut(s) 352, 951, 988, 1063
BtsI GCAGTG 1 cut(s) 835
BtsIMutI CAGTG 6 cut(s) 676, 701, 826, 835, 977, 1515
Cac8I GCNNGC 6 cut(s) 733, 826, 857, 873, 1129, 1453
Cfr10I RCCGGY 2 cut(s) 273, 731
Cfr13I GGNCC 3 cut(s) 222, 729, 1037
Csp6I GTAC 5 cut(s) 44, 325, 628, 1073, 1113
CviQI GTAC 5 cut(s) 44, 325, 628, 1073, 1113
DdeI CTNAG 7 cut(s) 198, 378, 423, 773, 1132, 1430, 1443
DpnI GATC 5 cut(s) 768, 789, 998, 1080, 1359
DpnII GATC 5 cut(s) 766, 787, 996, 1078, 1357
Eam1104I CTCTTC 5 cut(s) 97, 150, 188, 531, 948
EarI CTCTTC 5 cut(s) 97, 150, 188, 531, 948
Eco105I TACGTA 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 572, 899
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 873
FalI AAGNNNNNCTT 2 cut(s) 1485, 1517
FaqI GGGAC 3 cut(s) 476, 1170, 1228
FauI CCCGC 1 cut(s) 40
FokI GGATG 4 cut(s) 359, 958, 995, 1070
FriOI GRGCYC 1 cut(s) 873
FseI GGCCGGCC 1 cut(s) 735
FspBI CTAG 4 cut(s) 533, 633, 1082, 1101
GsaI CCCAGC 2 cut(s) 242, 462
HaeIII GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
HapII CCGG 4 cut(s) 149, 274, 358, 732
Hin1I GRCGYC 1 cut(s) 1159
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 1569
HinfI GANTC 6 cut(s) 539, 1097, 1326, 1334, 1406, 1471
HpaII CCGG 4 cut(s) 149, 274, 358, 732
Hpy166II GTNNAC 2 cut(s) 319, 530
Hpy188I TCNGA 7 cut(s) 101, 234, 424, 740, 774, 879, 1135
Hpy188III TCNNGA 9 cut(s) 543, 590, 633, 1055, 1066, 1121, 1148, 1383, 1403
Hpy8I GTNNAC 2 cut(s) 319, 530
HpyAV CCTTC 7 cut(s) 20, 67, 188, 268, 406, 845, 1587
HpyCH4III ACNGT 1 cut(s) 1519
HpyCH4IV ACGT 4 cut(s) 42, 547, 597, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 1137, 1319, 1448, 1493
HpyF3I CTNAG 7 cut(s) 198, 378, 423, 773, 1132, 1430, 1443
HpySE526I ACGT 4 cut(s) 42, 547, 597, 1159
Hsp92I GRCGYC 1 cut(s) 1159
KroI GCCGGC 1 cut(s) 731
KroNI GCCGGC 1 cut(s) 733
Kzo9I GATC 5 cut(s) 766, 787, 996, 1078, 1357
LmnI GCTCC 2 cut(s) 207, 1431
LweI GCATC 4 cut(s) 225, 340, 449, 1114
MaeI CTAG 4 cut(s) 533, 633, 1082, 1101
MaeII ACGT 4 cut(s) 42, 547, 597, 1159
MaeIII GTNAC 4 cut(s) 117, 638, 671, 1177
MalI GATC 5 cut(s) 768, 789, 998, 1080, 1359
MbiI CCGCTC 1 cut(s) 35
MboI GATC 5 cut(s) 766, 787, 996, 1078, 1357
MfeI CAATTG 2 cut(s) 216, 750
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 873
MluI ACGCGT 1 cut(s) 1170
MlyI GAGTC 2 cut(s) 548, 1480
MmeI TCCRAC 1 cut(s) 889
Mph1103I ATGCAT 1 cut(s) 442
MroNI GCCGGC 1 cut(s) 731
MroXI GAANNNNTTC 3 cut(s) 558, 665, 1572
MseI TTAA 5 cut(s) 489, 701, 815, 1350, 1374
MslI CAYNNNNRTG 3 cut(s) 1173, 1344, 1482
MspA1I CMGCKG 1 cut(s) 1010
MspI CCGG 4 cut(s) 149, 274, 358, 732
MspR9I CCNGG 1 cut(s) 359
MunI CAATTG 2 cut(s) 216, 750
Mva1269I GAATGC 1 cut(s) 1086
MvnI CGCG 1 cut(s) 1172
MwoI GCNNNNNNNGC 5 cut(s) 254, 1137, 1319, 1448, 1493
NaeI GCCGGC 1 cut(s) 733
NciI CCSGG 1 cut(s) 359
NdeII GATC 5 cut(s) 766, 787, 996, 1078, 1357
NgoMIV GCCGGC 1 cut(s) 731
NlaIV GGNNCC 3 cut(s) 223, 278, 1427
NmeAIII GCCGAG 2 cut(s) 682, 985
NmuCI GTSAC 3 cut(s) 117, 638, 671
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 3 cut(s) 469, 828, 1349
OliI CACNNNNGTG 1 cut(s) 1173
PaeI GCATGC 1 cut(s) 828
PciI ACATGT 2 cut(s) 465, 1345
PctI GAATGC 1 cut(s) 1086
PdiI GCCGGC 1 cut(s) 733
PdmI GAANNNNTTC 3 cut(s) 558, 665, 1572
PfeI GAWTC 4 cut(s) 1097, 1326, 1334, 1406
PflMI CCANNNNNTGG 1 cut(s) 979
PleI GAGTC 2 cut(s) 547, 1479
PpsI GAGTC 2 cut(s) 547, 1479
Ppu21I YACGTR 1 cut(s) 43
PscI ACATGT 2 cut(s) 465, 1345
PsiI TTATAA 2 cut(s) 923, 1047
Psp1406I AACGTT 1 cut(s) 597
PspFI CCCAGC 2 cut(s) 238, 458
PspN4I GGNNCC 3 cut(s) 223, 278, 1427
PspPI GGNCC 3 cut(s) 222, 729, 1037
PsuI RGATCY 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 1010
RigI GGCCGGCC 1 cut(s) 735
RsaI GTAC 5 cut(s) 45, 326, 629, 1074, 1114
RsaNI GTAC 5 cut(s) 44, 325, 628, 1073, 1113
RseI CAYNNNNRTG 3 cut(s) 1173, 1344, 1482
SaqAI TTAA 5 cut(s) 489, 701, 815, 1350, 1374
Sau3AI GATC 5 cut(s) 766, 787, 996, 1078, 1357
Sau96I GGNCC 3 cut(s) 222, 729, 1037
ScaI AGTACT 1 cut(s) 1074
SchI GAGTC 2 cut(s) 548, 1480
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 873
SfaNI GCATC 4 cut(s) 225, 340, 449, 1114
SfcI CTRYAG 1 cut(s) 1518
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 3 cut(s) 1173, 1344, 1482
SnaBI TACGTA 1 cut(s) 43
SphI GCATGC 1 cut(s) 828
SsiI CCGC 1 cut(s) 33
SspMI CTAG 4 cut(s) 533, 633, 1082, 1101
StyD4I CCNGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 1519
TaiI ACGT 4 cut(s) 45, 550, 600, 1162
TaqI TCGA 3 cut(s) 329, 366, 1275
TatI WGTACW 4 cut(s) 324, 627, 1072, 1112
TfiI GAWTC 4 cut(s) 1097, 1326, 1334, 1406
Tru1I TTAA 5 cut(s) 489, 701, 815, 1350, 1374
Tru9I TTAA 5 cut(s) 489, 701, 815, 1350, 1374
TscAI CASTG 6 cut(s) 676, 701, 826, 835, 984, 1522
TseFI GTSAC 3 cut(s) 117, 638, 671
Tsp45I GTSAC 3 cut(s) 117, 638, 671
TspRI CASTG 6 cut(s) 676, 701, 826, 835, 984, 1522
Van91I CCANNNNNTGG 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 2 cut(s) 209, 332
XbaI TCTAGA 1 cut(s) 632
XceI RCATGY 3 cut(s) 469, 828, 1349
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XmnI GAANNNNTTC 3 cut(s) 558, 665, 1572
XspI CTAG 4 cut(s) 533, 633, 1082, 1101
ZraI GACGTC 1 cut(s) 1160
ZrmI AGTACT 1 cut(s) 1074
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.