pycom12g06080

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015659
Physical Location & Seq
Reverse (-)
6150718 .. 6155335
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g06080.1

Sequence Viewer

Length: 2436 bp
ATGGAGATGGCAACCTGCAGCTTCCACAGCTCCTCCTCCTCCATCCCGAACACTAGAAGCACTAGCATTTCCTCTTCTCTTCCAGTCGCCAAGCAACTCTACGCCTTCACCTTACCTTCTTCCTCAACCGCCAAAATCACCACATTCTCCGCTCCCCGAAACCCTTCTCCACTCACCCGCCAGTCAAATGCTCCGTCTCCGAAGCCACTGAAGCCGCCGCCACCGCCACCGCAGCAGATCGCCGCTGTGCAGGTGCCAGAAGAACATATGGGCTCTGTTGTTGAACTTACTGGCAAAAGGCTGGAAGGCACAACCTTCTTCAAACAACGAGAATACACACTTCTCTTCAATGACTGGCTTCTGCTCCTCCAACTCTCAATTGGGTCCAAAATCCTCATTCTGGGTCAGGCAATTCATGCATTTTTACTCAAATGTGGCTGCCAGAATGACACATTTCAGGGCAACAATCTTGTCAACTTGTACTCGAAATTCAAAAGACTGGATGATGCACATCACCTTTTCGATGAAATGCCTGTTAGAAACACAATCACTTGGACTTCTCTCATGAAGGGGTATTCTGACATTGGTGACCTTGAATCTGTCTTCCACGTTGCACATGATATGTTTTGCAGCGACGAGAAGTTTAACGAGCATACGTGCTCGGTGATTTTGGAGGCGTGTAGTTCACTTGAAGACAGGAGAAGTGGGGAACAGGTTCATGGTTTTGTTGTAAAAAGTGGGCTTCAGGAGAATGTTGTTGTGGCCACTTCTTTGGTTTGTATGTACTCTAAAAGTGGCTTCTTGGGTGATGCAGAGAAAGTGTTCAATGACATGGATTACAAAGATGTTCAGTGTTTAAATTATATGATTTTAGAATATGGGAAGGCGGGCTGTGGAGAGAAAGCAATTGGGGTCTTTGTATATCTTCTGAGTTCTGGCTTAGAGCCAAATGATTATACTTTTACCAATCTGATTAGTGCATGCGATGGAGATGTGGGTGTGGATGAATGCTTGCAATTACATGGGCTTGCTGTCAAGTATGGTATTGTGGGTGAAACTTCTGTTGGGAATGCAGTAATAACCATGTACGGAAAGCACGGGATGGTTGAAGAAGCTGAGGCAATGTTTTATTTACTGGATGAGAGAAACTTAATTTCTTGGACCGCGCTTTTGTCAATGTATGTAAAAAATGGACGTGGGGATATGGCCCTCGATGCTTTCTTAAAAATACTCGATCGAGGTATTTGTGTTGATTCTAGCTGTTTATCTACCGTGATTGATGCCTGTTCAGAGTGCAGAAATCTGGAATTGGGATGTCTGATCCATGCATTTTGCATAAAGCTTGATTTTTACTCTTGTGTCAACGTTGGGACTGCGTTGATTGACATATACGCTAAATGTGGGAGCCTTCAATCTGCAAGACAGGTTTTTGATGGCCTTTCAGGTAAAAACACCGCTTCATTTAATGCAGTACTTGTTGGATTCATGGAACAACGTAGAGATGTTGAAGAGGATTCCATGGTCTTATTTAGTCGGTTGAGGTCGTCTGGTGTAAATCCAGATTTCATAACGTATTCACGACTCCTTAGTGTAGCAGCTGAAGAAGCTTGCTTAGAAAGGGGGAAGAGTCTCCATGCTTGCACTATTAAAGCTGGATTTGAAGCCAATTCCACTGTATCTAATGCTGTAATTACCATGTATGCCAAATGTGGTAGCATTGAAGAAGCTTATCAAATGTTCAATGGTATGAATAGTCGTGATTGCATATCGTGGAACGCCATAATTTCTGCACATGCCCTTCATGGAGAAGGCAACAAAGCACTTTCACTTTTTGAGTCAATGAAGGGAGAAGGGTTTGCCCCTGATGAGCTCACGCTATTGGCTACTCTTCAAGCTTGCAGTTACAATGGACTATGGGAAACTGGGTTACGCTTATTCAACGAAATGGAGCCAAAATATGGAACTAAGTCAGGAATTGAGCACTTTGCATGCATGGTGGATCTTCTGGGTCGGTCTGGGAATTTTTCAGAAGCCATCAATTTCATCCACAGAAGTCCATTTCCAGATTCACCTATGCTTTGGAGAACTTTAGTGAATGTGTGCATGATAAGTGGGAATTTGAATTATGGCATGTTAGCCTCAAAACATTTGCTTGACTTGCAACCTGAGGACGCTGGGTCTTACATACTTGTTTCAAATATGTATGCTCGAGGAGGAATGTTTGATGAGGCTGCAAAGATTCGAACCATTATGAATGACTTGAAAATGAACAAAGAAGCAGGATGCAGCTGGATTGACGTTGGTAATAAATTTCATTATTTTGTTGCAAGTGATATGGGCCATCCAAAAAGTGCTGAAATTTATGCAGAACTCAAATCTATTGAAGGTTTTAATAAACAAATGAGTGATGATAGATGTGATCTCCATCTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

812

Amino Acids

89.35

Weight (kDa)

5.33

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 180 - 228 2.1e-06 PPR repeat family
PPR_2 PF13041 282 - 328 2.6e-07 PPR repeat family
PPR_2 PF13041 383 - 430 2.9e-06 PPR repeat family
PPR_2 PF13041 587 - 633 8.1e-08 PPR repeat family
PPR PF01535 589 - 619 3e-06 PPR repeat
E_motif PF20431 706 - 766 1.7e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015659)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23520
malus_domestica MD12G1072400.v1.1 MD14G1069600.v1.1
pyrus_communis pycom12g06080 pycom14g05770
rosa_chinensis RchiOBHm_Chr3g0481521
rosa_laevigata RLG00000023390
rosa_multiflora Rmu_co8224982.1_g000001 Rmu_sc0010846.1_g000006
rosa_roxburghii Rroxscaffold_6G00400370
rosa_rugosa Rorug03G0192400
rosa_samantha Rh3AG243600 Rh3BG278500 Rh3CG273700 Rh3DG270500
rosa_wichuraiana Rw3G021760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 241
Acc36I ACCTGC 2 cut(s) 23, 241
AccB1I GGYRCC 1 cut(s) 253
AccB7I CCANNNNNTGG 1 cut(s) 1958
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 1166
AclI AACGTT 1 cut(s) 1365
AclWI GGATC 2 cut(s) 1315, 2007
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 5 cut(s) 488, 2020, 2116, 2309, 2358
AcuI CTGAAG 3 cut(s) 230, 728, 1620
AfaI GTAC 4 cut(s) 482, 785, 1088, 1473
AfiI CCNNNNNNNGG 2 cut(s) 400, 1958
AhdI GACNNNNNGTC 1 cut(s) 2176
AjiI CACGTC 1 cut(s) 1196
AjuI GAANNNNNNNTTGG 2 cut(s) 1047, 1079
Alw21I GWGCWC 3 cut(s) 662, 1872, 1983
Alw26I GTCTC 2 cut(s) 201, 1634
AlwI GGATC 2 cut(s) 1315, 2007
Ama87I CYCGRG 1 cut(s) 2208
AoxI GGCC 4 cut(s) 762, 1206, 1435, 2338
ApeKI GCWGC 7 cut(s) 18, 232, 438, 630, 1595, 2231, 2286
ApoI RAATTY 5 cut(s) 488, 2020, 2116, 2309, 2358
ArsI GACNNNNNNTTYG 4 cut(s) 179, 211, 1153, 1185
Asp700I GAANNNNTTC 3 cut(s) 163, 714, 821
AspLEI GCGC 1 cut(s) 1168
AspS9I GGNCC 4 cut(s) 384, 1161, 1207, 2338
AsuHPI GGTGA 9 cut(s) 100, 130, 166, 506, 599, 676, 818, 1064, 2061
AsuII TTCGAA 1 cut(s) 2242
AvaI CYCGRG 1 cut(s) 2208
AvaII GGWCC 2 cut(s) 384, 1161
AxyI CCTNAGG 1 cut(s) 2166
BalI TGGCCA 1 cut(s) 764
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 2 cut(s) 275, 1872
BbsI GAAGAC 2 cut(s) 595, 699
Bbv12I GWGCWC 3 cut(s) 662, 1872, 1983
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 7 cut(s) 30, 244, 425, 642, 1607, 2218, 2298
BccI CCATC 7 cut(s) 50, 980, 1096, 1427, 2042, 2349, 2433
BcoDI GTCTC 2 cut(s) 201, 1634
BfaI CTAG 3 cut(s) 54, 63, 1257
BfmI CTRYAG 1 cut(s) 16
BfuAI ACCTGC 2 cut(s) 23, 241
BmcAI AGTACT 1 cut(s) 1473
Bme18I GGWCC 2 cut(s) 384, 1161
BmeRI GACNNNNNGTC 1 cut(s) 2176
BmeT110I CYCGRG 1 cut(s) 2208
BmgBI CACGTC 1 cut(s) 1196
BmgT120I GGNCC 4 cut(s) 384, 1161, 1207, 2338
BmiI GGNNCC 4 cut(s) 255, 385, 1406, 1950
BmrI ACTGGG 1 cut(s) 1932
BmsI GCATC 5 cut(s) 496, 799, 1204, 1270, 2273
BmuI ACTGGG 1 cut(s) 1932
BpiI GAAGAC 2 cut(s) 595, 699
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu14I TTCGAA 1 cut(s) 2242
BsaAI YACGTR 1 cut(s) 657
BsaBI GATNNNNATC 2 cut(s) 510, 2424
BsaJI CCNNGG 1 cut(s) 1518
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 1958
Bse1I ACTGG 7 cut(s) 83, 181, 295, 359, 504, 1140, 1927
Bse21I CCTNAGG 1 cut(s) 2166
Bse3DI GCAATG 1 cut(s) 1128
Bse8I GATNNNNATC 2 cut(s) 510, 2424
BseDI CCNNGG 1 cut(s) 1518
BseGI GGATG 9 cut(s) 42, 508, 1009, 1107, 1144, 1319, 2043, 2288, 2341
BseJI GATNNNNATC 2 cut(s) 510, 2424
BseLI CCNNNNNNNGG 2 cut(s) 400, 1958
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 3 cut(s) 920, 1107, 2157
BseNI ACTGG 7 cut(s) 83, 181, 295, 359, 504, 1140, 1927
BseRI GAGGAG 5 cut(s) 22, 25, 28, 356, 2226
BseXI GCAGC 7 cut(s) 30, 244, 425, 642, 1607, 2218, 2298
BseYI CCCAGC 1 cut(s) 2174
BsgI GTGCAG 3 cut(s) 269, 1315, 1773
Bsh1236I CGCG 1 cut(s) 1166
Bsh1285I CGRYCG 1 cut(s) 1237
BshFI GGCC 4 cut(s) 764, 1208, 1437, 2340
BshNI GGYRCC 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 1237
BsiHKAI GWGCWC 3 cut(s) 662, 1872, 1983
BsiHKCI CYCGRG 1 cut(s) 2208
BslFI GGGAC 1 cut(s) 1384
BslI CCNNNNNNNGG 2 cut(s) 400, 1958
BsmAI GTCTC 2 cut(s) 201, 1634
BsmBI CGTCTC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 1384
BsmI GAATGC 2 cut(s) 1013, 1075
BsnI GGCC 4 cut(s) 764, 1208, 1437, 2340
BsoBI CYCGRG 1 cut(s) 2208
Bsp119I TTCGAA 1 cut(s) 2242
Bsp1286I GDGCHC 4 cut(s) 275, 662, 1872, 1983
Bsp143I GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
Bsp19I CCATGG 1 cut(s) 1518
BspANI GGCC 4 cut(s) 764, 1208, 1437, 2340
BspCNI CTCAG 3 cut(s) 921, 1108, 2158
BspFNI CGCG 1 cut(s) 1166
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 4 cut(s) 255, 385, 1406, 1950
BspMAI CTGCAG 1 cut(s) 20
BspMI ACCTGC 2 cut(s) 23, 241
BspPI GGATC 2 cut(s) 1315, 2007
BspT104I TTCGAA 1 cut(s) 2242
BspT107I GGYRCC 1 cut(s) 253
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 7 cut(s) 83, 181, 295, 359, 504, 1140, 1927
BssECI CCNNGG 1 cut(s) 1518
BssMI GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
BssT1I CCWWGG 1 cut(s) 1518
Bst4CI ACNGT 2 cut(s) 1273, 1675
Bst6I CTCTTC 6 cut(s) 79, 84, 350, 1503, 1619, 1893
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 2242
BstC8I GCNNGC 8 cut(s) 889, 982, 1013, 1029, 1609, 1639, 1897, 1990
BstDEI CTNAG 7 cut(s) 929, 940, 1116, 1586, 1612, 1965, 2166
BstDSI CCRYGG 1 cut(s) 1518
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 9 cut(s) 42, 508, 1009, 1107, 1144, 1319, 2043, 2288, 2341
BstFNI CGCG 1 cut(s) 1166
BstHHI GCGC 1 cut(s) 1168
BstKTI GATC 5 cut(s) 240, 1237, 1323, 2002, 2422
BstMAI GTCTC 2 cut(s) 201, 1634
BstMBI GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
BstMCI CGRYCG 1 cut(s) 1237
BstMWI GCNNNNNNNGC 8 cut(s) 27, 211, 223, 232, 416, 1214, 1604, 2158
BstNSI RCATGY 4 cut(s) 984, 1796, 1992, 2134
BstPI GGTNACC 1 cut(s) 587
BstSFI CTRYAG 1 cut(s) 16
BstUI CGCG 1 cut(s) 1166
BstV1I GCAGC 7 cut(s) 30, 244, 425, 642, 1607, 2218, 2298
BstV2I GAAGAC 2 cut(s) 595, 699
BstX2I RGATCY 1 cut(s) 1999
BstXI CCANNNNNNTGG 1 cut(s) 772
BstYI RGATCY 1 cut(s) 1999
Bsu36I CCTNAGG 1 cut(s) 2166
BsuRI GGCC 4 cut(s) 764, 1208, 1437, 2340
BtgI CCRYGG 1 cut(s) 1518
BtgZI GCGATG 1 cut(s) 999
BtrI CACGTC 1 cut(s) 1196
BtsCI GGATG 9 cut(s) 42, 508, 1009, 1107, 1144, 1319, 2043, 2288, 2341
BtsIMutI CAGTG 3 cut(s) 206, 857, 1671
BveI ACCTGC 2 cut(s) 23, 241
Cac8I GCNNGC 8 cut(s) 889, 982, 1013, 1029, 1609, 1639, 1897, 1990
CciI TCATGA 1 cut(s) 564
CfoI GCGC 1 cut(s) 1168
Cfr13I GGNCC 4 cut(s) 384, 1161, 1207, 2338
CseI GACGC 1 cut(s) 2180
Csp6I GTAC 4 cut(s) 481, 784, 1087, 1472
CviQI GTAC 4 cut(s) 481, 784, 1087, 1472
DdeI CTNAG 7 cut(s) 929, 940, 1116, 1586, 1612, 1965, 2166
DpnI GATC 5 cut(s) 239, 1236, 1322, 2001, 2421
DpnII GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
DraI TTTAAA 1 cut(s) 858
DriI GACNNNNNGTC 1 cut(s) 2176
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 6 cut(s) 79, 84, 350, 1503, 1619, 1893
Eam1105I GACNNNNNGTC 1 cut(s) 2176
EarI CTCTTC 6 cut(s) 79, 84, 350, 1503, 1619, 1893
Ecl136II GAGCTC 1 cut(s) 1870
Eco130I CCWWGG 1 cut(s) 1518
Eco24I GRGCYC 2 cut(s) 275, 1872
Eco47I GGWCC 2 cut(s) 384, 1161
Eco53kI GAGCTC 1 cut(s) 1870
Eco57I CTGAAG 3 cut(s) 230, 728, 1620
Eco81I CCTNAGG 1 cut(s) 2166
Eco88I CYCGRG 1 cut(s) 2208
Eco91I GGTNACC 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 1870
EcoO65I GGTNACC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 1518
EcoT22I ATGCAT 3 cut(s) 421, 1330, 1994
EcoT38I GRGCYC 2 cut(s) 275, 1872
ErhI CCWWGG 1 cut(s) 1518
Esp3I CGTCTC 1 cut(s) 201
FaqI GGGAC 1 cut(s) 1384
FauI CCCGC 2 cut(s) 185, 880
FauNDI CATATG 1 cut(s) 267
FokI GGATG 9 cut(s) 29, 515, 1016, 1114, 1151, 1326, 2030, 2295, 2328
FriOI GRGCYC 2 cut(s) 275, 1872
FspBI CTAG 3 cut(s) 54, 63, 1257
GlaI GCGC 1 cut(s) 1167
GsaI CCCAGC 1 cut(s) 2178
HaeIII GGCC 4 cut(s) 764, 1208, 1437, 2340
HgaI GACGC 1 cut(s) 2180
HhaI GCGC 1 cut(s) 1168
Hin6I GCGC 1 cut(s) 1166
HinP1I GCGC 1 cut(s) 1166
HincII GTYRAC 2 cut(s) 475, 1363
HindII GTYRAC 2 cut(s) 475, 1363
HindIII AAGCTT 4 cut(s) 1340, 1605, 1725, 1893
HinfI GANTC 9 cut(s) 596, 1253, 1482, 1514, 1581, 1627, 1835, 2066, 2239
HphI GGTGA 9 cut(s) 100, 130, 166, 506, 599, 676, 818, 1064, 2061
Hpy166II GTNNAC 3 cut(s) 475, 686, 1363
Hpy188I TCNGA 8 cut(s) 201, 580, 930, 972, 1291, 1320, 2029, 2430
Hpy188III TCNNGA 9 cut(s) 46, 565, 746, 1304, 1559, 1578, 1757, 1971, 2063
Hpy8I GTNNAC 3 cut(s) 475, 686, 1363
Hpy99I CGWCG 1 cut(s) 638
HpyCH4III ACNGT 2 cut(s) 1273, 1675
HpyCH4IV ACGT 7 cut(s) 609, 656, 1195, 1365, 1495, 1571, 2298
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 211, 223, 232, 416, 1214, 1604, 2158
HpyF3I CTNAG 7 cut(s) 929, 940, 1116, 1586, 1612, 1965, 2166
HpySE526I ACGT 7 cut(s) 609, 656, 1195, 1365, 1495, 1571, 2298
HspAI GCGC 1 cut(s) 1166
Kzo9I GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
LmnI GCTCC 6 cut(s) 35, 157, 196, 369, 1404, 1948
Lsp1109I GCAGC 7 cut(s) 30, 244, 425, 642, 1607, 2218, 2298
LweI GCATC 5 cut(s) 496, 799, 1204, 1270, 2273
MaeI CTAG 3 cut(s) 54, 63, 1257
MaeII ACGT 7 cut(s) 609, 656, 1195, 1365, 1495, 1571, 2298
MaeIII GTNAC 3 cut(s) 587, 1901, 1926
MalI GATC 5 cut(s) 239, 1236, 1322, 2001, 2421
MbiI CCGCTC 1 cut(s) 152
MboI GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
MfeI CAATTG 2 cut(s) 378, 906
MflI RGATCY 1 cut(s) 1999
MhlI GDGCHC 4 cut(s) 275, 662, 1872, 1983
MlsI TGGCCA 1 cut(s) 764
MluNI TGGCCA 1 cut(s) 764
MlyI GAGTC 3 cut(s) 1575, 1636, 1844
MmeI TCCRAC 2 cut(s) 394, 1459
Mox20I TGGCCA 1 cut(s) 764
Mph1103I ATGCAT 3 cut(s) 421, 1330, 1994
MroXI GAANNNNTTC 3 cut(s) 163, 714, 821
MscI TGGCCA 1 cut(s) 764
MseI TTAA 7 cut(s) 645, 857, 1151, 1223, 1464, 1647, 2391
Msp20I TGGCCA 1 cut(s) 764
MspA1I CMGCKG 3 cut(s) 245, 1598, 2289
MunI CAATTG 2 cut(s) 378, 906
Mva1269I GAATGC 2 cut(s) 1013, 1075
MvnI CGCG 1 cut(s) 1166
MwoI GCNNNNNNNGC 8 cut(s) 27, 211, 223, 232, 416, 1214, 1604, 2158
NcoI CCATGG 1 cut(s) 1518
NdeI CATATG 1 cut(s) 267
NdeII GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
NlaIV GGNNCC 4 cut(s) 255, 385, 1406, 1950
NmuCI GTSAC 1 cut(s) 587
NsiI ATGCAT 3 cut(s) 421, 1330, 1994
NspI RCATGY 4 cut(s) 984, 1796, 1992, 2134
NspV TTCGAA 1 cut(s) 2242
PaeI GCATGC 2 cut(s) 984, 1992
PaeR7I CTCGAG 1 cut(s) 2208
PagI TCATGA 1 cut(s) 564
PaqCI CACCTGC 1 cut(s) 241
PctI GAATGC 2 cut(s) 1013, 1075
PdmI GAANNNNTTC 3 cut(s) 163, 714, 821
PfeI GAWTC 6 cut(s) 596, 1253, 1482, 1514, 2066, 2239
PflMI CCANNNNNTGG 1 cut(s) 1958
Ple19I CGATCG 1 cut(s) 1237
PleI GAGTC 3 cut(s) 1575, 1635, 1843
PpsI GAGTC 3 cut(s) 1575, 1635, 1843
Ppu21I YACGTR 1 cut(s) 657
Psp124BI GAGCTC 1 cut(s) 1872
Psp1406I AACGTT 1 cut(s) 1365
PspEI GGTNACC 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 2174
PspN4I GGNNCC 4 cut(s) 255, 385, 1406, 1950
PspPI GGNCC 4 cut(s) 384, 1161, 1207, 2338
PspXI VCTCGAGB 1 cut(s) 2208
PstI CTGCAG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 1999
PvuI CGATCG 1 cut(s) 1237
PvuII CAGCTG 2 cut(s) 1598, 2289
RsaI GTAC 4 cut(s) 482, 785, 1088, 1473
RsaNI GTAC 4 cut(s) 481, 784, 1087, 1472
SacI GAGCTC 1 cut(s) 1872
SaqAI TTAA 7 cut(s) 645, 857, 1151, 1223, 1464, 1647, 2391
Sau3AI GATC 5 cut(s) 237, 1234, 1320, 1999, 2419
Sau96I GGNCC 4 cut(s) 384, 1161, 1207, 2338
ScaI AGTACT 1 cut(s) 1473
SchI GAGTC 3 cut(s) 1575, 1636, 1844
SduI GDGCHC 4 cut(s) 275, 662, 1872, 1983
SfaNI GCATC 5 cut(s) 496, 799, 1204, 1270, 2273
SfcI CTRYAG 1 cut(s) 16
Sfr274I CTCGAG 1 cut(s) 2208
SfuI TTCGAA 1 cut(s) 2242
SinI GGWCC 2 cut(s) 384, 1161
SlaI CTCGAG 1 cut(s) 2208
SmlI CTYRAG 1 cut(s) 2208
SmoI CTYRAG 1 cut(s) 2208
SphI GCATGC 2 cut(s) 984, 1992
SspMI CTAG 3 cut(s) 54, 63, 1257
SstI GAGCTC 1 cut(s) 1872
StyI CCWWGG 1 cut(s) 1518
TaaI ACNGT 2 cut(s) 1273, 1675
TaiI ACGT 7 cut(s) 612, 659, 1198, 1368, 1498, 1574, 2301
TaqI TCGA 7 cut(s) 485, 522, 1212, 1233, 1237, 2209, 2242
TaqII GACCGA 1 cut(s) 2001
TatI WGTACW 3 cut(s) 480, 783, 1471
TauI GCSGC 3 cut(s) 217, 220, 245
TfiI GAWTC 6 cut(s) 596, 1253, 1482, 1514, 2066, 2239
Tru1I TTAA 7 cut(s) 645, 857, 1151, 1223, 1464, 1647, 2391
Tru9I TTAA 7 cut(s) 645, 857, 1151, 1223, 1464, 1647, 2391
TscAI CASTG 3 cut(s) 213, 857, 1678
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 7 cut(s) 18, 232, 438, 630, 1595, 2231, 2286
Tsp45I GTSAC 1 cut(s) 587
TspGWI ACGGA 2 cut(s) 183, 1104
TspRI CASTG 3 cut(s) 213, 857, 1678
Van91I CCANNNNNTGG 1 cut(s) 1958
VpaK11BI GGWCC 2 cut(s) 384, 1161
XapI RAATTY 5 cut(s) 488, 2020, 2116, 2309, 2358
XceI RCATGY 4 cut(s) 984, 1796, 1992, 2134
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 2208
XmnI GAANNNNTTC 3 cut(s) 163, 714, 821
XspI CTAG 3 cut(s) 54, 63, 1257
ZrmI AGTACT 1 cut(s) 1473
Zsp2I ATGCAT 3 cut(s) 421, 1330, 1994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.