Rh3BG278500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015659
Physical Location & Seq
Reverse (-)
27324858 .. 27327877
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG278500.1

Sequence Viewer

Length: 2283 bp
ATGGATACCCTTCTCTCCAACGCCTTGCTTCCCGCGTTTTACGTACCCCAACGACCCTTCCCTCCATTGAAGAACACCTTCAGCAAGTCCTCTTCAATCCGAAACCCAAAACCCAGGTCACTCCATTTTTCTACCAACTCAACTCTTCCAGCCTCTCCACAACACAGCCTTCTCTTCAATGAATGGCCTCAGCTCCTCAAATTCTCAATTGGGTCCAAAAATCTGATGCTGGGTCAGGCAATTCATGCCTTCTTACTCAAATGCCGGTGCCAAACTGACACCGACACATTCCAAGGCAACAATCTCGTCAACTTGTACTCGAAATTCAAAAGATTGGATGATGCACACCGGGTATTCGATGAAATGCCTGAGAGAAACACAATCACTTGGACTACTCTAATGAAGGGGTATTCTGAGGTTGGCAATTATGCATCTCTTTTTCGCATTGCTCGGGACATGTTTCGGGGAGAGGAGAAGTTTAATGAGCATACTTGTTCTGTGATTTTGGAGGCGTGTGGTTCACTAGAAGAGCCGAGACGTGGGGAACAGGTTCATGGTTTTGTTGTAAAAAGTGGGCTTCAGGACAACGTTTTTGTAGCTACTTCATTGGTCTCTATGTACTCTAGAAGTGACTGCTTGGGCAATGCCGAGAAAGTGTTCAGTGACATGGATTACAAAGATATTCAGTGCTTAAATTATATGATTTTAGAATATGGGAGGGCCGGCCTTGGAGAGAAAGCAATTGAGGTTTTTATTGATCTTCTGAGTTCTGGTATAGATCCAAATGATTATACATTTACTAATTTAATCAGTGCATGCAGTGGAGATGTGGGTGTGCATGAAGGCCGGCAATTACATGGGCTCGCTGTGAAGTATGGAATTATCTGTGAAACTTCTGTTGGAAATGCAGTTATAACAATGTATGGAAAGCATGGGATGATTGAAGAGGCCGAGACAATGTTCTATACGGTGGATGAGAGGAACTTGATCTCTTGGACAGCTGTTTTATCAATGTATGTCAAAAATGGCCCTGTTGATAAGGCTCTGGATGTTTTCTTGAAAGTACTTGATCTAGGCATTCATTGTGATTCTAGTTTTTTATGTACTATTCTTGATGCCTGCTCAGAGTGCAGAAATCTGGAATTGGGACGTCAAATCCACGCATGTGTTACAAAACTTGGTTATCACTCTGGTGTTCATGTTGGGACAGCTTTGATAGACATATATGCAAAATGTGGGAACCTTCAATCTGCAAGACTGGTTTTTGATGGTCTTTCAGGTAAAAATACTGCTTCACTCAATGCAGTTCTGGCTGGATTCATGGAATCACATATACATGTTGAAGACGATCCCATTGTCTTATTTAATCAATCAAGATATGCTGGCATAATTCCAGATTCCATAACTTTTTCGAGGCTCCTTAGCTTGTCTGCGGAGGAAGCCTGCTTGGTTATGGGTAAGAGTCTTCATTCTTATGCTATCAAAGATGGACTTGAAGCCAATTCCACTGTAGCTAATGCTATAATTACCATGTATGCCAAATGTGGTAGCATTGAAGAAGCTTTTCAAATGTTCAATGGTATGAGTAGTCGTGATTGTGTATCCTGGAATGCCATAATTTCAGCATATGCTCTTCATGGAGAAGGCACCAAAGCACTTTCACTGTTTGAAAATATGAAGGAAGAAGGTTTTGCCCCTGATGGAATTACGTTGTTGGCTGTTCTTCAAGCTTGCATTTACTCTGGATTATGGGAAAGTGGGTTATGCTTATTCAACGAAATGGAGCCAAAATATGGGACTAGGTCCGTGATTGAGCACTTTGGTTGCATGGTCGATCTTTTGGGTCGGGCTGGGAAATTTTCAGAAGCCATCGATTTCATCAACACAAGTCCATTTCCAGACTCACCGATGCTTTGGAGAACTTTAGTCAATGTCTGCATGTTATGTGGGAATTTAAATTTTGGCATTTTAGCTTCAAAGCATTTGCTTGAGTTGGAACCTGATGAGGCTGGGTCATATATACTTGTTTCAAATATGTATGCTGGAGGAGGAATGTTTGATGAGGCTGCAAAAGTTAGAACTGTTATGAATGACTTGAAAGTAAACAAAGAAGCAGGTTGCAGCTGGATTGAAGTAGATAATAAGTTTCATTATTTTGTGGCAAGTGATATGGACCATCCGAAAAGCGATGAAATTTATGAGAAGTTGAATCTCTTGAAGATTCAAATAAAACTGAACAGTCATGATAGAAGTGATCTCTGTCTGGCTGCAGATCCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

760

Amino Acids

84.18

Weight (kDa)

5.36

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 125 - 172 6.7e-06 PPR repeat family
PPR_2 PF13041 227 - 273 1.3e-08 PPR repeat family
PPR_2 PF13041 532 - 578 2.6e-09 PPR repeat family
PPR PF01535 534 - 564 1.2e-07 PPR repeat
E_motif PF20431 651 - 711 1.1e-13 E motif
Eplus_motif PF20430 717 - 736 9.1e-06 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015659)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23520
malus_domestica MD12G1072400.v1.1 MD14G1069600.v1.1
pyrus_communis pycom12g06080 pycom14g05770
rosa_chinensis RchiOBHm_Chr3g0481521
rosa_laevigata RLG00000023390
rosa_multiflora Rmu_co8224982.1_g000001 Rmu_sc0010846.1_g000006
rosa_roxburghii Rroxscaffold_6G00400370
rosa_rugosa Rorug03G0192400
rosa_samantha Rh3AG243600 Rh3BG278500 Rh3CG273700 Rh3DG270500
rosa_wichuraiana Rw3G021760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 914, 2281
AatII GACGTC 1 cut(s) 1153
Acc36I ACCTGC 1 cut(s) 2105
AccB1I GGYRCC 2 cut(s) 267, 1646
AccB7I CCANNNNNTGG 1 cut(s) 1793
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 33, 1433
AclI AACGTT 1 cut(s) 588
AclWI GGATC 3 cut(s) 773, 1343, 2267
AcsI RAATTY 6 cut(s) 200, 323, 1856, 1951, 1957, 2193
AcuI CTGAAG 2 cut(s) 64, 563
AcyI GRCGYC 1 cut(s) 1150
AfaI GTAC 5 cut(s) 45, 317, 620, 1065, 1105
AfiI CCNNNNNNNGG 2 cut(s) 539, 1793
AflIII ACRYGT 2 cut(s) 456, 1336
AjiI CACGTC 1 cut(s) 539
AjnI CCWGG 2 cut(s) 113, 1604
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AleI CACNNNNGTG 2 cut(s) 1164, 1191
Alw21I GWGCWC 1 cut(s) 1818
Alw26I GTCTC 3 cut(s) 529, 616, 947
AlwI GGATC 3 cut(s) 773, 1343, 2267
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 6 cut(s) 185, 720, 724, 844, 948, 1027
ApeKI GCWGC 3 cut(s) 2066, 2121, 2267
ApoI RAATTY 6 cut(s) 200, 323, 1856, 1951, 1957, 2193
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 575, 607
Asp700I GAANNNNTTC 4 cut(s) 77, 549, 656, 1563
AspS9I GGNCC 5 cut(s) 213, 720, 1028, 1803, 2173
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 1896
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 3 cut(s) 213, 1803, 2173
BanI GGYRCC 2 cut(s) 267, 1646
BanII GRGCYC 1 cut(s) 864
BbsI GAAGAC 2 cut(s) 1350, 1457
Bbv12I GWGCWC 1 cut(s) 1818
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 2053, 2133, 2254
BccI CCATC 5 cut(s) 1262, 1481, 1694, 1877, 2184
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 2 cut(s) 115, 1606
BciVI GTATCC 1 cut(s) 1612
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 3 cut(s) 529, 616, 947
BfaI CTAG 5 cut(s) 524, 624, 1073, 1092, 1800
BfmI CTRYAG 2 cut(s) 1509, 2268
BfuAI ACCTGC 1 cut(s) 2105
BfuI GTATCC 1 cut(s) 1612
BisI GCNGC 3 cut(s) 2067, 2122, 2268
BlsI GCNGC 3 cut(s) 2068, 2123, 2269
BmcAI AGTACT 1 cut(s) 1065
Bme1390I CCNGG 3 cut(s) 115, 350, 1606
Bme18I GGWCC 3 cut(s) 213, 1803, 2173
BmeT110I CYCGRG 1 cut(s) 450
BmgBI CACGTC 1 cut(s) 539
BmgT120I GGNCC 5 cut(s) 213, 720, 1028, 1803, 2173
BmiI GGNNCC 7 cut(s) 214, 269, 1241, 1418, 1648, 1785, 1998
BmrFI CCNGG 3 cut(s) 115, 350, 1606
BmsI GCATC 5 cut(s) 216, 331, 440, 1105, 1899
BpiI GAAGAC 2 cut(s) 1350, 1457
BpmI CTGGAG 1 cut(s) 2064
Bpu10I CCTNAGC 2 cut(s) 189, 1421
BpuEI CTTGAG 1 cut(s) 2009
BpuMI CCSGG 1 cut(s) 350
Bsa29I ATCGAT 1 cut(s) 1872
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 1150
BsaI GGTCTC 1 cut(s) 616
BsaJI CCNNGG 3 cut(s) 113, 292, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 539, 1793
Bse118I RCCGGY 3 cut(s) 264, 722, 846
Bse1I ACTGG 1 cut(s) 1263
Bse3DI GCAATG 2 cut(s) 444, 649
BseBI CCWGG 2 cut(s) 115, 1606
BseCI ATCGAT 1 cut(s) 1872
BseDI CCNNGG 3 cut(s) 113, 292, 727
BseGI GGATG 5 cut(s) 343, 942, 979, 1054, 2176
BseLI CCNNNNNNNGG 2 cut(s) 539, 1793
BseMI GCAATG 2 cut(s) 444, 649
BseMII CTCAG 5 cut(s) 203, 360, 405, 755, 1137
BseNI ACTGG 1 cut(s) 1263
BseRI GAGGAG 3 cut(s) 185, 485, 2061
BseXI GCAGC 3 cut(s) 2053, 2133, 2254
BseYI CCCAGC 3 cut(s) 229, 1850, 2009
BsgI GTGCAG 1 cut(s) 1150
Bsh1236I CGCG 1 cut(s) 35
BshFI GGCC 6 cut(s) 187, 722, 726, 846, 950, 1029
BshNI GGYRCC 2 cut(s) 267, 1646
BshVI ATCGAT 1 cut(s) 1872
BsiHKAI GWGCWC 1 cut(s) 1818
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 4 cut(s) 265, 349, 723, 847
BslFI GGGAC 4 cut(s) 467, 1161, 1219, 1810
BslI CCNNNNNNNGG 2 cut(s) 539, 1793
BsmAI GTCTC 3 cut(s) 529, 616, 947
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 4 cut(s) 467, 1161, 1219, 1810
BsmI GAATGC 2 cut(s) 1077, 1615
BsnI GGCC 6 cut(s) 187, 722, 726, 846, 950, 1029
Bso31I GGTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 864, 1818
Bsp143I GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
BspACI CCGC 2 cut(s) 33, 1433
BspANI GGCC 6 cut(s) 187, 722, 726, 846, 950, 1029
BspCNI CTCAG 5 cut(s) 202, 361, 406, 756, 1136
BspDI ATCGAT 1 cut(s) 1872
BspFNI CGCG 1 cut(s) 35
BspHI TCATGA 1 cut(s) 2242
BspLI GGNNCC 7 cut(s) 214, 269, 1241, 1418, 1648, 1785, 1998
BspMAI CTGCAG 1 cut(s) 2272
BspMI ACCTGC 1 cut(s) 2105
BspPI GGATC 3 cut(s) 773, 1343, 2267
BspQI GCTCTTC 2 cut(s) 522, 1638
BspT107I GGYRCC 2 cut(s) 267, 1646
BspTNI GGTCTC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 444, 649
BsrFI RCCGGY 3 cut(s) 264, 722, 846
BsrI ACTGG 1 cut(s) 1263
BssAI RCCGGY 3 cut(s) 264, 722, 846
BssECI CCNNGG 3 cut(s) 113, 292, 727
BssMI GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
BssNI GRCGYC 1 cut(s) 1150
BssT1I CCWWGG 2 cut(s) 292, 727
Bst2UI CCWGG 2 cut(s) 115, 1606
Bst4CI ACNGT 5 cut(s) 970, 1510, 1665, 2083, 2240
Bst6I CTCTTC 6 cut(s) 97, 150, 179, 522, 939, 1638
BstACI GRCGYC 1 cut(s) 1150
BstAPI GCANNNNNTGC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 8 cut(s) 724, 817, 848, 864, 1120, 1384, 1444, 1732
BstDEI CTNAG 6 cut(s) 189, 369, 414, 764, 1123, 1421
BstF5I GGATG 5 cut(s) 343, 942, 979, 1054, 2176
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 8 cut(s) 760, 781, 990, 1072, 1351, 1837, 2257, 2275
BstMAI GTCTC 3 cut(s) 529, 616, 947
BstMBI GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
BstMWI GCNNNNNNNGC 4 cut(s) 245, 1128, 1310, 1439
BstNI CCWGG 2 cut(s) 115, 1606
BstNSI RCATGY 5 cut(s) 460, 819, 1167, 1340, 1942
BstSCI CCNGG 3 cut(s) 113, 348, 1604
BstSFI CTRYAG 2 cut(s) 1509, 2268
BstSNI TACGTA 1 cut(s) 43
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 2053, 2133, 2254
BstV2I GAAGAC 2 cut(s) 1350, 1457
BstX2I RGATCY 2 cut(s) 778, 2272
BstYI RGATCY 2 cut(s) 778, 2272
Bsu15I ATCGAT 1 cut(s) 1872
BsuI GTATCC 1 cut(s) 1612
BsuRI GGCC 6 cut(s) 187, 722, 726, 846, 950, 1029
BsuTUI ATCGAT 1 cut(s) 1872
BtgZI GCGATG 1 cut(s) 2202
BtrI CACGTC 1 cut(s) 539
BtsCI GGATG 5 cut(s) 343, 942, 979, 1054, 2176
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 6 cut(s) 667, 692, 817, 826, 1506, 1661
BveI ACCTGC 1 cut(s) 2105
Cac8I GCNNGC 8 cut(s) 724, 817, 848, 864, 1120, 1384, 1444, 1732
CciI TCATGA 1 cut(s) 2242
Cfr10I RCCGGY 3 cut(s) 264, 722, 846
Cfr13I GGNCC 5 cut(s) 213, 720, 1028, 1803, 2173
ClaI ATCGAT 1 cut(s) 1872
Csp6I GTAC 5 cut(s) 44, 316, 619, 1064, 1104
CviQI GTAC 5 cut(s) 44, 316, 619, 1064, 1104
DdeI CTNAG 6 cut(s) 189, 369, 414, 764, 1123, 1421
DpnI GATC 8 cut(s) 759, 780, 989, 1071, 1350, 1836, 2256, 2274
DpnII GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
DraI TTTAAA 1 cut(s) 1956
Eam1104I CTCTTC 6 cut(s) 97, 150, 179, 522, 939, 1638
EarI CTCTTC 6 cut(s) 97, 150, 179, 522, 939, 1638
Eco105I TACGTA 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 292, 727
Eco24I GRGCYC 1 cut(s) 864
Eco31I GGTCTC 1 cut(s) 616
Eco47I GGWCC 3 cut(s) 213, 1803, 2173
Eco57I CTGAAG 2 cut(s) 64, 563
Eco88I CYCGRG 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 113, 1604
EcoT14I CCWWGG 2 cut(s) 292, 727
EcoT22I ATGCAT 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 864
ErhI CCWWGG 2 cut(s) 292, 727
Esp3I CGTCTC 1 cut(s) 529
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 1476, 1508
FaqI GGGAC 4 cut(s) 467, 1161, 1219, 1810
FauI CCCGC 1 cut(s) 40
FauNDI CATATG 1 cut(s) 1627
Fnu4HI GCNGC 3 cut(s) 2067, 2122, 2268
FokI GGATG 5 cut(s) 350, 949, 986, 1061, 2163
FriOI GRGCYC 1 cut(s) 864
FseI GGCCGGCC 1 cut(s) 726
Fsp4HI GCNGC 3 cut(s) 2067, 2122, 2268
FspBI CTAG 5 cut(s) 524, 624, 1073, 1092, 1800
GluI GCNGC 3 cut(s) 2067, 2122, 2268
GsaI CCCAGC 3 cut(s) 233, 1854, 2013
GsuI CTGGAG 1 cut(s) 2064
HaeIII GGCC 6 cut(s) 187, 722, 726, 846, 950, 1029
HapII CCGG 4 cut(s) 265, 349, 723, 847
Hin1I GRCGYC 1 cut(s) 1150
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 1560, 1728
HinfI GANTC 8 cut(s) 1088, 1317, 1325, 1397, 1462, 1901, 2209, 2221
HpaII CCGG 4 cut(s) 265, 349, 723, 847
HphI GGTGA 1 cut(s) 1896
Hpy166II GTNNAC 3 cut(s) 310, 521, 2104
Hpy188I TCNGA 7 cut(s) 101, 225, 415, 765, 1126, 1864, 2181
Hpy8I GTNNAC 3 cut(s) 310, 521, 2104
HpyCH4III ACNGT 5 cut(s) 970, 1510, 1665, 2083, 2240
HpyCH4IV ACGT 5 cut(s) 42, 538, 588, 1150, 1709
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 1128, 1310, 1439
HpyF3I CTNAG 6 cut(s) 189, 369, 414, 764, 1123, 1421
HpySE526I ACGT 5 cut(s) 42, 538, 588, 1150, 1709
Hsp92I GRCGYC 1 cut(s) 1150
KroI GCCGGC 2 cut(s) 722, 846
KroNI GCCGGC 2 cut(s) 724, 848
Kzo9I GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
LguI GCTCTTC 2 cut(s) 522, 1638
LmnI GCTCC 3 cut(s) 198, 1422, 1783
Lsp1109I GCAGC 3 cut(s) 2053, 2133, 2254
LweI GCATC 5 cut(s) 216, 331, 440, 1105, 1899
MaeI CTAG 5 cut(s) 524, 624, 1073, 1092, 1800
MaeII ACGT 5 cut(s) 42, 538, 588, 1150, 1709
MaeIII GTNAC 4 cut(s) 117, 629, 662, 1168
MalI GATC 8 cut(s) 759, 780, 989, 1071, 1350, 1836, 2256, 2274
MboI GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
MfeI CAATTG 2 cut(s) 207, 741
MflI RGATCY 2 cut(s) 778, 2272
MhlI GDGCHC 2 cut(s) 864, 1818
MlyI GAGTC 2 cut(s) 1471, 1895
MmeI TCCRAC 3 cut(s) 42, 880, 1974
Mph1103I ATGCAT 1 cut(s) 433
MroNI GCCGGC 2 cut(s) 722, 846
MroXI GAANNNNTTC 4 cut(s) 77, 549, 656, 1563
MseI TTAA 5 cut(s) 480, 692, 806, 1365, 1955
MslI CAYNNNNRTG 4 cut(s) 1164, 1191, 1335, 1473
MspA1I CMGCKG 2 cut(s) 1001, 2124
MspI CCGG 4 cut(s) 265, 349, 723, 847
MspR9I CCNGG 3 cut(s) 115, 350, 1606
MunI CAATTG 2 cut(s) 207, 741
Mva1269I GAATGC 2 cut(s) 1077, 1615
MvaI CCWGG 2 cut(s) 115, 1606
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 4 cut(s) 245, 1128, 1310, 1439
NaeI GCCGGC 2 cut(s) 724, 848
NciI CCSGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 1627
NdeII GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
NgoMIV GCCGGC 2 cut(s) 722, 846
NlaIV GGNNCC 7 cut(s) 214, 269, 1241, 1418, 1648, 1785, 1998
NmeAIII GCCGAG 3 cut(s) 558, 673, 976
NmuCI GTSAC 3 cut(s) 117, 629, 662
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 5 cut(s) 460, 819, 1167, 1340, 1942
OliI CACNNNNGTG 2 cut(s) 1164, 1191
PaeI GCATGC 1 cut(s) 819
PagI TCATGA 1 cut(s) 2242
PciI ACATGT 2 cut(s) 456, 1336
PciSI GCTCTTC 2 cut(s) 522, 1638
PctI GAATGC 2 cut(s) 1077, 1615
PdiI GCCGGC 2 cut(s) 724, 848
PdmI GAANNNNTTC 4 cut(s) 77, 549, 656, 1563
PfeI GAWTC 6 cut(s) 1088, 1317, 1325, 1397, 2209, 2221
PflFI GACNNNGTC 1 cut(s) 1801
PflMI CCANNNNNTGG 1 cut(s) 1793
PfoI TCCNGGA 1 cut(s) 1604
PkrI GCNGC 3 cut(s) 2068, 2123, 2269
PleI GAGTC 2 cut(s) 1470, 1895
PpsI GAGTC 2 cut(s) 1470, 1895
Ppu21I YACGTR 1 cut(s) 43
PscI ACATGT 2 cut(s) 456, 1336
PsiI TTATAA 2 cut(s) 914, 2281
Psp1406I AACGTT 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 113, 1604
PspFI CCCAGC 3 cut(s) 229, 1850, 2009
PspGI CCWGG 2 cut(s) 113, 1604
PspN4I GGNNCC 7 cut(s) 214, 269, 1241, 1418, 1648, 1785, 1998
PspPI GGNCC 5 cut(s) 213, 720, 1028, 1803, 2173
PstI CTGCAG 1 cut(s) 2272
PsuI RGATCY 2 cut(s) 778, 2272
PsyI GACNNNGTC 1 cut(s) 1801
PvuII CAGCTG 2 cut(s) 1001, 2124
RigI GGCCGGCC 1 cut(s) 726
RsaI GTAC 5 cut(s) 45, 317, 620, 1065, 1105
RsaNI GTAC 5 cut(s) 44, 316, 619, 1064, 1104
RseI CAYNNNNRTG 4 cut(s) 1164, 1191, 1335, 1473
SapI GCTCTTC 2 cut(s) 522, 1638
SaqAI TTAA 5 cut(s) 480, 692, 806, 1365, 1955
SatI GCNGC 3 cut(s) 2067, 2122, 2268
Sau3AI GATC 8 cut(s) 757, 778, 987, 1069, 1348, 1834, 2254, 2272
Sau96I GGNCC 5 cut(s) 213, 720, 1028, 1803, 2173
ScaI AGTACT 1 cut(s) 1065
SchI GAGTC 2 cut(s) 1471, 1895
ScrFI CCNGG 3 cut(s) 115, 350, 1606
SduI GDGCHC 2 cut(s) 864, 1818
SfaNI GCATC 5 cut(s) 216, 331, 440, 1105, 1899
SfcI CTRYAG 2 cut(s) 1509, 2268
SinI GGWCC 3 cut(s) 213, 1803, 2173
SmiI ATTTAAAT 1 cut(s) 1956
SmiMI CAYNNNNRTG 4 cut(s) 1164, 1191, 1335, 1473
SmlI CTYRAG 1 cut(s) 1988
SmoI CTYRAG 1 cut(s) 1988
SnaBI TACGTA 1 cut(s) 43
SphI GCATGC 1 cut(s) 819
SsiI CCGC 2 cut(s) 33, 1433
SspMI CTAG 5 cut(s) 524, 624, 1073, 1092, 1800
StyD4I CCNGG 3 cut(s) 113, 348, 1604
StyI CCWWGG 2 cut(s) 292, 727
SwaI ATTTAAAT 1 cut(s) 1956
TaaI ACNGT 5 cut(s) 970, 1510, 1665, 2083, 2240
TaiI ACGT 5 cut(s) 45, 541, 591, 1153, 1712
TaqI TCGA 5 cut(s) 320, 357, 1412, 1833, 1872
TatI WGTACW 4 cut(s) 315, 618, 1063, 1103
TfiI GAWTC 6 cut(s) 1088, 1317, 1325, 1397, 2209, 2221
Tru1I TTAA 5 cut(s) 480, 692, 806, 1365, 1955
Tru9I TTAA 5 cut(s) 480, 692, 806, 1365, 1955
TscAI CASTG 6 cut(s) 667, 692, 817, 826, 1513, 1668
TseFI GTSAC 3 cut(s) 117, 629, 662
TseI GCWGC 3 cut(s) 2066, 2121, 2267
Tsp45I GTSAC 3 cut(s) 117, 629, 662
TspGWI ACGGA 1 cut(s) 1795
TspRI CASTG 6 cut(s) 667, 692, 817, 826, 1513, 1668
Tth111I GACNNNGTC 1 cut(s) 1801
Van91I CCANNNNNTGG 1 cut(s) 1793
VpaK11BI GGWCC 3 cut(s) 213, 1803, 2173
XapI RAATTY 6 cut(s) 200, 323, 1856, 1951, 1957, 2193
XbaI TCTAGA 1 cut(s) 623
XceI RCATGY 5 cut(s) 460, 819, 1167, 1340, 1942
XmnI GAANNNNTTC 4 cut(s) 77, 549, 656, 1563
XspI CTAG 5 cut(s) 524, 624, 1073, 1092, 1800
ZraI GACGTC 1 cut(s) 1151
ZrmI AGTACT 1 cut(s) 1065
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.