Rorug03G0192400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015659
Physical Location & Seq
Forward (+)
16948057 .. 16949021
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0192400.1

Sequence Viewer

Length: 333 bp
ATGAGAAGACCATCATCTACTCTCTTCCTCAAACTCTCCTTCACCCATTATCAAAAAAAAAAAAAACTCTCCTTCACCCGTCATCACTTCACCCCTCCTCCTCTTCCTCTTCCTACTTCCACCAATCCCTTCCCGCTTCATCGTCGCCGGTCATCGGGTTCTCTTCCTCGCAATCCCGGCCATTGCCTCGCCGCCAAATCGGGACCGCCCCAGCCTCCTCCGGAATCTGACCAGACTCAGCGCTCAGGTATTCCTGATGCTAATATTTCTTTCATCAATAGCTCCGTAAGAAAGACTCCAGAATTTTCAATTCCCATGGAAATGAGACGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

110

Amino Acids

12.47

Weight (kDa)

11.61

Isoelectric Point (pI)

75.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015659)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23520
malus_domestica MD12G1072400.v1.1 MD14G1069600.v1.1
pyrus_communis pycom12g06080 pycom14g05770
rosa_chinensis RchiOBHm_Chr3g0481521
rosa_laevigata RLG00000023390
rosa_multiflora Rmu_co8224982.1_g000001 Rmu_sc0010846.1_g000006
rosa_roxburghii Rroxscaffold_6G00400370
rosa_rugosa Rorug03G0192400
rosa_samantha Rh3AG243600 Rh3BG278500 Rh3CG273700 Rh3DG270500
rosa_wichuraiana Rw3G021760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 3 cut(s) 134, 192, 206
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 302
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 309
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 220
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 302
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 3 cut(s) 34, 67, 82
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 13
BccI CCATC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 181
BseAI TCCGGA 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 251, 258
BseRI GAGGAG 3 cut(s) 87, 90, 207
BseYI CCCAGC 1 cut(s) 210
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 3 cut(s) 148, 177, 221
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 220
Bsp19I CCATGG 1 cut(s) 315
BspACI CCGC 3 cut(s) 134, 192, 206
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 250, 257
BspEI TCCGGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 315
Bst6I CTCTTC 4 cut(s) 29, 108, 114, 168
BstDEI CTNAG 2 cut(s) 237, 244
BstDSI CCRYGG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 315
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 203
CviAII CATG 1 cut(s) 316
CviJI RGCY 3 cut(s) 180, 214, 282
CviKI_1 RGCY 3 cut(s) 180, 214, 282
DdeI CTNAG 2 cut(s) 237, 244
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 4 cut(s) 29, 108, 114, 168
EarI CTCTTC 4 cut(s) 29, 108, 114, 168
Eco130I CCWWGG 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 203
Eco47III AGCGCT 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 319
FaiI YATR 1 cut(s) 317
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 315
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 331
GlaI GCGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 1 cut(s) 180
HapII CCGG 3 cut(s) 148, 177, 221
HhaI GCGC 1 cut(s) 243
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HinfI GANTC 3 cut(s) 224, 235, 295
HpaII CCGG 3 cut(s) 148, 177, 221
HphI GGTGA 3 cut(s) 34, 67, 82
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 4 cut(s) 201, 221, 254, 299
Hpy99I CGWCG 1 cut(s) 147
HpyAV CCTTC 3 cut(s) 49, 82, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 237, 244
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 241
Kpn2I TCCGGA 1 cut(s) 220
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 8 cut(s) 161, 190, 224, 231, 234, 245, 267, 312
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 331
MboII GAAGA 5 cut(s) 16, 18, 95, 101, 155
MluCI AATT 2 cut(s) 302, 309
MlyI GAGTC 2 cut(s) 229, 289
MnlI CCTC 9 cut(s) 38, 105, 108, 111, 117, 177, 197, 225, 228
MroI TCCGGA 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 320
MspI CCGG 3 cut(s) 148, 177, 221
MspR9I CCNGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 177
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 315
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 2 cut(s) 229, 289
PpsI GAGTC 2 cut(s) 229, 289
PspFI CCCAGC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 320
SatI GCNGC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 229, 289
ScrFI CCNGG 1 cut(s) 177
SetI ASST 2 cut(s) 250, 284
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 2 cut(s) 302, 309
SsiI CCGC 3 cut(s) 134, 192, 206
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 315
TasI AATT 2 cut(s) 302, 309
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 128, 262
TspGWI ACGGA 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 302
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.