Rh3DG270500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015659
Physical Location & Seq
Reverse (-)
27049073 .. 27052466
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG270500.1

Sequence Viewer

Length: 2292 bp
ATGGATACCCTTCTCTCTAACTCCTTGCTTCCCGCTCTTTACGTACCCCAACGACCCTTCCCTCCATTGAAGAACACCATCAGCAAGTCCTCTTCAATCCGAAACCCAAAACCCAAGTCACTCCATTTTTCTACCAACTCAACTCTTCCGGCCTCTCCACAACAAGCACAACGCAGCCTTCTCTTCAGTGAATGGCCTCAGCTCCTCAAATTCTCAATTGGGTCCAAAAATCTGATGCTGGGTCAGGCAATTCACGCCTTCTTACTCAAATGCCGGTGCCAAACTGACACCGACACATTTCAAGGCAACAATCTCGTCAACATGTACTCGAAATTCAAAAGATTGGATGATGCACACCGGGTATTCGATGAAATGCCTGAGAGAAACACAATCACTTGGACTGCTCTAATGAAGGGGTATTCTGAGGTTGGCGATTATGCATCTCTTTTTCGCATTGCTCGGGACATGTTTCGGGGAGAGGAGAAGTTTAATGAGCATACTTGCTCTGTGATTTTGGAGGCGTGTGGTTCACTAGAAGAGTCAAGACGTGGGGAACAGGTTCATAGTTTTGTTGTGAAAAGTGGGCTTCAGGACAACGTTTTTGTAGCTACTTCATTGGTCTCTATGTACTCTAGAAGTGACTGCTTGGGCAATGCCGAGAAAGTGTTCGGTGACATGGATTACAAAGATATCCAGTGCTTAAATTATATGATTTTAGAATATGGGAGGGCCGGCCTCGGAGAGAAAGCAATTGGGGTTTTTATTGATCTTCTGAGTTCCGGTATAGATCCAAATGATTATACATTTACTAATTTAATCAGTGCATGCAGTGGAGATGTGGGTGTGCATGAAGGCCGGCAATTACATGGGCTCGCTGTGAAGTATGGAATTATCTGTGAAACTTCTGTTGGAAATGCAGTTATAACAATGTATGGAAAGCATGGGATGATTGAAGAGGCCGAGACAATGTTCTATGCAGTGGATGAGAGGAACTTGATCTCTTGGACAGCTGTTCTATCAATGTACGTCAAAAATGGCCCTGTTGATAAGGCTCTGGATGTTTTCTTGAAAGTACTTGATCTAGGCATTCATTGTGATTCTAGTTTTTTATGTACTATTCTTGATGCCTGCTCAGAGTGCAGAAATCTGGAATTGGGACGTCAAATCCACGCGTGTGTTACAAAACTTGGTTATTACTCTGGTGTTCATGTTGGGACAGCTTTGATAGACATATATGCCAAATGTGGGAACTTTCAATCTGCAAGACGGGTTTTCGATGGTCTTTCAGGTAAAAATACTGCCTCACTCAATGCAGTTCTGGCTGGATTCATGGAATCACATATACATGTTGAAGATGATCCCATTGTCTTATTTAATCAATCAAGATATGCTGGTATAATTCCAGATTCCATAACTTTTTCACGGCTCCTTAGCTTGTCTGCTGAGGAAGCCTGCTTGGTTATGGGTAAGAGTCTTCATTCTTATGCTATCAAAGCTGGACTTGAAGCCAATTCCACTGTAGGTAATGCTATAATTACCATGTATGCCAAATGTGGTAGCATTGAAGAAGCTTTTCAAATGTTCAATGGTATGAATAGTCGCGATTGTGTATCCTGGAATGCCATAATTTCAGCATATGCTCTTCATGGAGAAGGCACCAAAGCACTTTCACTGTTTGATAATATGAAGGAAGAAGGTTTTGCTCCTGATGGAATTACGTTGTTGGCTGTTCTTCAAGCTTGCAGTTACTCTGGATTATGGGAAACTGGGTTATGCTTATTCAACGAAATGGAGCCAAAATATGGGACTAGGTCCGTGATTGAGCACTTTGGTTGCATGGTCGATCTTTTGGGTCGGGCTGGGAAATTTTCAGAAGCCATCGATTTCATCAACACAAGTCCATTTCCAGACTCACCGATGCTTTGGAGAACTTTAGTCAATGTCTGCATGTTATGTGGGAATTTAAATTTTGGCATTTTAGCTTCAAAGCATTTGCTTGAGTTGGAACCTGATGAGGCTGGGTCATATATACTTGTTTCAAATATGTATGCTGGAGGAGGAATGTTTGATGAGGCTGCAAAAGTTAGAACTGTTATGAATGACTTGAAAGTAAACAAAGAAGCAGGTTGCAGCTGGATTGAAGTAGATAATAAGTTTCATTATTTTGTGGCAAGTGATATGGACCATCCGAAAAGCGATGAAATTTATCAGAAGTTGAATCTCTTGAAGATTCAAATAAAACTGAACAGTCATGATAGAAGTGATCTCTGTCTGGCTGCAGATCCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

763

Amino Acids

84.34

Weight (kDa)

5.46

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 230 - 276 5.9e-08 PPR repeat family
PPR_2 PF13041 535 - 581 1.8e-09 PPR repeat family
PPR PF01535 537 - 567 1.1e-07 PPR repeat
E_motif PF20431 654 - 714 1.1e-13 E motif
Eplus_motif PF20430 720 - 739 9.6e-06 E+ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015659)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g23520
malus_domestica MD12G1072400.v1.1 MD14G1069600.v1.1
pyrus_communis pycom12g06080 pycom14g05770
rosa_chinensis RchiOBHm_Chr3g0481521
rosa_laevigata RLG00000023390
rosa_multiflora Rmu_co8224982.1_g000001 Rmu_sc0010846.1_g000006
rosa_roxburghii Rroxscaffold_6G00400370
rosa_rugosa Rorug03G0192400
rosa_samantha Rh3AG243600 Rh3BG278500 Rh3CG273700 Rh3DG270500
rosa_wichuraiana Rw3G021760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 923, 2290
AatII GACGTC 1 cut(s) 1162
Acc36I ACCTGC 1 cut(s) 2114
AccB1I GGYRCC 2 cut(s) 276, 1655
AccB7I CCANNNNNTGG 1 cut(s) 1802
AccBSI CCGCTC 1 cut(s) 35
AccII CGCG 2 cut(s) 1172, 1602
AciI CCGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 597
AclWI GGATC 3 cut(s) 782, 1352, 2276
AcsI RAATTY 6 cut(s) 209, 332, 1865, 1960, 1966, 2202
AcuI CTGAAG 2 cut(s) 169, 572
AcyI GRCGYC 1 cut(s) 1159
AfaI GTAC 6 cut(s) 45, 326, 629, 1025, 1074, 1114
AfiI CCNNNNNNNGG 2 cut(s) 1245, 1802
AflIII ACRYGT 4 cut(s) 321, 465, 1170, 1345
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 1 cut(s) 1613
AjuI GAANNNNNNNTTGG 2 cut(s) 891, 923
AleI CACNNNNGTG 1 cut(s) 1173
Alw21I GWGCWC 1 cut(s) 1827
Alw26I GTCTC 2 cut(s) 625, 956
AlwI GGATC 3 cut(s) 782, 1352, 2276
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 7 cut(s) 150, 194, 729, 733, 853, 957, 1036
ApeKI GCWGC 4 cut(s) 174, 2075, 2130, 2276
ApoI RAATTY 6 cut(s) 209, 332, 1865, 1960, 1966, 2202
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 584, 616
Asp700I GAANNNNTTC 3 cut(s) 558, 665, 1572
AspS9I GGNCC 5 cut(s) 222, 729, 1037, 1812, 2182
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 683, 1905
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 3 cut(s) 222, 1812, 2182
BanI GGYRCC 2 cut(s) 276, 1655
BanII GRGCYC 1 cut(s) 873
BbsI GAAGAC 1 cut(s) 1466
Bbv12I GWGCWC 1 cut(s) 1827
BbvCI CCTCAGC 2 cut(s) 198, 1443
BbvI GCAGC 4 cut(s) 186, 2062, 2142, 2263
BccI CCATC 5 cut(s) 86, 1271, 1703, 1886, 2193
BceAI ACGGC 1 cut(s) 1439
BcgI CGANNNNNNTGC 2 cut(s) 295, 329
BciT130I CCWGG 1 cut(s) 1615
BciVI GTATCC 1 cut(s) 1621
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 625, 956
BfaI CTAG 5 cut(s) 533, 633, 1082, 1101, 1809
BfmI CTRYAG 2 cut(s) 1518, 2277
BfuAI ACCTGC 1 cut(s) 2114
BfuI GTATCC 1 cut(s) 1621
BisI GCNGC 4 cut(s) 175, 2076, 2131, 2277
BlsI GCNGC 4 cut(s) 176, 2077, 2132, 2278
BmcAI AGTACT 1 cut(s) 1074
Bme1390I CCNGG 2 cut(s) 359, 1615
Bme18I GGWCC 3 cut(s) 222, 1812, 2182
BmeT110I CYCGRG 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 5 cut(s) 222, 729, 1037, 1812, 2182
BmiI GGNNCC 6 cut(s) 223, 278, 1427, 1657, 1794, 2007
BmrFI CCNGG 2 cut(s) 359, 1615
BmrI ACTGGG 1 cut(s) 1776
BmsI GCATC 5 cut(s) 225, 340, 449, 1114, 1908
BmuI ACTGGG 1 cut(s) 1776
BpiI GAAGAC 1 cut(s) 1466
BpmI CTGGAG 1 cut(s) 2073
Bpu10I CCTNAGC 3 cut(s) 198, 1430, 1443
BpuEI CTTGAG 1 cut(s) 2018
BpuMI CCSGG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 1881
BsaAI YACGTR 1 cut(s) 43
BsaHI GRCGYC 1 cut(s) 1159
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 736
BsaWI WCCGGW 1 cut(s) 779
Bsc4I CCNNNNNNNGG 2 cut(s) 1245, 1802
Bse118I RCCGGY 3 cut(s) 273, 731, 855
Bse1I ACTGG 2 cut(s) 694, 1771
Bse3DI GCAATG 2 cut(s) 453, 658
BseBI CCWGG 1 cut(s) 1615
BseCI ATCGAT 1 cut(s) 1881
BseDI CCNNGG 1 cut(s) 736
BseGI GGATG 5 cut(s) 352, 951, 988, 1063, 2185
BseLI CCNNNNNNNGG 2 cut(s) 1245, 1802
BseMI GCAATG 2 cut(s) 453, 658
BseMII CTCAG 6 cut(s) 212, 369, 414, 764, 1146, 1434
BseNI ACTGG 2 cut(s) 694, 1771
BseRI GAGGAG 3 cut(s) 194, 494, 2070
BseXI GCAGC 4 cut(s) 186, 2062, 2142, 2263
BseYI CCCAGC 3 cut(s) 238, 1859, 2018
BsgI GTGCAG 1 cut(s) 1159
Bsh1236I CGCG 2 cut(s) 1172, 1602
BshFI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
BshNI GGYRCC 2 cut(s) 276, 1655
BshVI ATCGAT 1 cut(s) 1881
BsiHKAI GWGCWC 1 cut(s) 1827
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 6 cut(s) 149, 274, 358, 732, 780, 856
BslFI GGGAC 4 cut(s) 476, 1170, 1228, 1819
BslI CCNNNNNNNGG 2 cut(s) 1245, 1802
BsmAI GTCTC 2 cut(s) 625, 956
BsmFI GGGAC 4 cut(s) 476, 1170, 1228, 1819
BsmI GAATGC 2 cut(s) 1086, 1624
BsnI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 2 cut(s) 873, 1827
Bsp143I GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
Bsp68I TCGCGA 1 cut(s) 1602
BspACI CCGC 1 cut(s) 33
BspANI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
BspCNI CTCAG 6 cut(s) 211, 370, 415, 765, 1145, 1435
BspDI ATCGAT 1 cut(s) 1881
BspFNI CGCG 2 cut(s) 1172, 1602
BspHI TCATGA 1 cut(s) 2251
BspLI GGNNCC 6 cut(s) 223, 278, 1427, 1657, 1794, 2007
BspMAI CTGCAG 1 cut(s) 2281
BspMI ACCTGC 1 cut(s) 2114
BspPI GGATC 3 cut(s) 782, 1352, 2276
BspQI GCTCTTC 1 cut(s) 1647
BspT107I GGYRCC 2 cut(s) 276, 1655
BspTNI GGTCTC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 453, 658
BsrFI RCCGGY 3 cut(s) 273, 731, 855
BsrI ACTGG 2 cut(s) 694, 1771
BssAI RCCGGY 3 cut(s) 273, 731, 855
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
BssNI GRCGYC 1 cut(s) 1159
Bst2UI CCWGG 1 cut(s) 1615
Bst4CI ACNGT 4 cut(s) 1519, 1674, 2092, 2249
Bst6I CTCTTC 6 cut(s) 97, 150, 188, 531, 948, 1647
BstACI GRCGYC 1 cut(s) 1159
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 7 cut(s) 733, 826, 857, 873, 1129, 1453, 1741
BstDEI CTNAG 7 cut(s) 198, 378, 423, 773, 1132, 1430, 1443
BstF5I GGATG 5 cut(s) 352, 951, 988, 1063, 2185
BstFNI CGCG 2 cut(s) 1172, 1602
BstKTI GATC 8 cut(s) 769, 790, 999, 1081, 1360, 1846, 2266, 2284
BstMAI GTCTC 2 cut(s) 625, 956
BstMBI GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
BstMWI GCNNNNNNNGC 5 cut(s) 254, 1137, 1319, 1448, 1493
BstNI CCWGG 1 cut(s) 1615
BstNSI RCATGY 5 cut(s) 325, 469, 828, 1349, 1951
BstSCI CCNGG 2 cut(s) 357, 1613
BstSFI CTRYAG 2 cut(s) 1518, 2277
BstSNI TACGTA 1 cut(s) 43
BstUI CGCG 2 cut(s) 1172, 1602
BstV1I GCAGC 4 cut(s) 186, 2062, 2142, 2263
BstV2I GAAGAC 1 cut(s) 1466
BstX2I RGATCY 2 cut(s) 787, 2281
BstYI RGATCY 2 cut(s) 787, 2281
Bsu15I ATCGAT 1 cut(s) 1881
BsuI GTATCC 1 cut(s) 1621
BsuRI GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
BsuTUI ATCGAT 1 cut(s) 1881
BtgZI GCGATG 1 cut(s) 2211
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 5 cut(s) 352, 951, 988, 1063, 2185
BtsI GCAGTG 2 cut(s) 835, 984
BtsIMutI CAGTG 7 cut(s) 193, 701, 826, 835, 984, 1515, 1670
BtuMI TCGCGA 1 cut(s) 1602
BveI ACCTGC 1 cut(s) 2114
Cac8I GCNNGC 7 cut(s) 733, 826, 857, 873, 1129, 1453, 1741
CciI TCATGA 1 cut(s) 2251
Cfr10I RCCGGY 3 cut(s) 273, 731, 855
Cfr13I GGNCC 5 cut(s) 222, 729, 1037, 1812, 2182
ClaI ATCGAT 1 cut(s) 1881
Csp6I GTAC 6 cut(s) 44, 325, 628, 1024, 1073, 1113
CviQI GTAC 6 cut(s) 44, 325, 628, 1024, 1073, 1113
DdeI CTNAG 7 cut(s) 198, 378, 423, 773, 1132, 1430, 1443
DpnI GATC 8 cut(s) 768, 789, 998, 1080, 1359, 1845, 2265, 2283
DpnII GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
DraI TTTAAA 1 cut(s) 1965
Eam1104I CTCTTC 6 cut(s) 97, 150, 188, 531, 948, 1647
EarI CTCTTC 6 cut(s) 97, 150, 188, 531, 948, 1647
Eco105I TACGTA 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 873
Eco31I GGTCTC 1 cut(s) 625
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 3 cut(s) 222, 1812, 2182
Eco57I CTGAAG 2 cut(s) 169, 572
Eco88I CYCGRG 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 1613
EcoRV GATATC 1 cut(s) 691
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 873
FalI AAGNNNNNCTT 2 cut(s) 1485, 1517
FaqI GGGAC 4 cut(s) 476, 1170, 1228, 1819
FauI CCCGC 1 cut(s) 40
FauNDI CATATG 1 cut(s) 1636
Fnu4HI GCNGC 4 cut(s) 175, 2076, 2131, 2277
FokI GGATG 5 cut(s) 359, 958, 995, 1070, 2172
FriOI GRGCYC 1 cut(s) 873
FseI GGCCGGCC 1 cut(s) 735
Fsp4HI GCNGC 4 cut(s) 175, 2076, 2131, 2277
FspBI CTAG 5 cut(s) 533, 633, 1082, 1101, 1809
GluI GCNGC 4 cut(s) 175, 2076, 2131, 2277
GsaI CCCAGC 3 cut(s) 242, 1863, 2022
GsuI CTGGAG 1 cut(s) 2073
HaeIII GGCC 7 cut(s) 152, 196, 731, 735, 855, 959, 1038
HapII CCGG 6 cut(s) 149, 274, 358, 732, 780, 856
Hin1I GRCGYC 1 cut(s) 1159
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 1569, 1737
HinfI GANTC 9 cut(s) 539, 1097, 1326, 1334, 1406, 1471, 1910, 2218, 2230
HpaII CCGG 6 cut(s) 149, 274, 358, 732, 780, 856
HphI GGTGA 2 cut(s) 683, 1905
Hpy166II GTNNAC 3 cut(s) 319, 530, 2113
Hpy188I TCNGA 9 cut(s) 101, 234, 424, 740, 774, 1135, 1873, 2190, 2211
Hpy8I GTNNAC 3 cut(s) 319, 530, 2113
HpyAV CCTTC 9 cut(s) 20, 67, 188, 268, 406, 845, 1646, 1681, 1688
HpyCH4III ACNGT 4 cut(s) 1519, 1674, 2092, 2249
HpyCH4IV ACGT 6 cut(s) 42, 547, 597, 1026, 1159, 1718
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 1137, 1319, 1448, 1493
HpyF3I CTNAG 7 cut(s) 198, 378, 423, 773, 1132, 1430, 1443
HpySE526I ACGT 6 cut(s) 42, 547, 597, 1026, 1159, 1718
Hsp92I GRCGYC 1 cut(s) 1159
KroI GCCGGC 2 cut(s) 731, 855
KroNI GCCGGC 2 cut(s) 733, 857
Kzo9I GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
LguI GCTCTTC 1 cut(s) 1647
LmnI GCTCC 4 cut(s) 207, 1431, 1708, 1792
Lsp1109I GCAGC 4 cut(s) 186, 2062, 2142, 2263
LweI GCATC 5 cut(s) 225, 340, 449, 1114, 1908
MaeI CTAG 5 cut(s) 533, 633, 1082, 1101, 1809
MaeII ACGT 6 cut(s) 42, 547, 597, 1026, 1159, 1718
MaeIII GTNAC 5 cut(s) 117, 638, 671, 1177, 1745
MalI GATC 8 cut(s) 768, 789, 998, 1080, 1359, 1845, 2265, 2283
MbiI CCGCTC 1 cut(s) 35
MboI GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
MfeI CAATTG 2 cut(s) 216, 750
MflI RGATCY 2 cut(s) 787, 2281
MhlI GDGCHC 2 cut(s) 873, 1827
MluI ACGCGT 1 cut(s) 1170
MlyI GAGTC 3 cut(s) 548, 1480, 1904
MmeI TCCRAC 2 cut(s) 889, 1983
Mph1103I ATGCAT 1 cut(s) 442
MroNI GCCGGC 2 cut(s) 731, 855
MroXI GAANNNNTTC 3 cut(s) 558, 665, 1572
MseI TTAA 5 cut(s) 489, 701, 815, 1374, 1964
MslI CAYNNNNRTG 3 cut(s) 1173, 1344, 1482
MspA1I CMGCKG 2 cut(s) 1010, 2133
MspI CCGG 6 cut(s) 149, 274, 358, 732, 780, 856
MspR9I CCNGG 2 cut(s) 359, 1615
MunI CAATTG 2 cut(s) 216, 750
Mva1269I GAATGC 2 cut(s) 1086, 1624
MvaI CCWGG 1 cut(s) 1615
MvnI CGCG 2 cut(s) 1172, 1602
MwoI GCNNNNNNNGC 5 cut(s) 254, 1137, 1319, 1448, 1493
NaeI GCCGGC 2 cut(s) 733, 857
NciI CCSGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 1636
NdeII GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
NgoMIV GCCGGC 2 cut(s) 731, 855
NlaIV GGNNCC 6 cut(s) 223, 278, 1427, 1657, 1794, 2007
NmeAIII GCCGAG 2 cut(s) 682, 985
NmuCI GTSAC 3 cut(s) 117, 638, 671
NruI TCGCGA 1 cut(s) 1602
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 5 cut(s) 325, 469, 828, 1349, 1951
OliI CACNNNNGTG 1 cut(s) 1173
PaeI GCATGC 1 cut(s) 828
PagI TCATGA 1 cut(s) 2251
PciI ACATGT 3 cut(s) 321, 465, 1345
PciSI GCTCTTC 1 cut(s) 1647
PctI GAATGC 2 cut(s) 1086, 1624
PdiI GCCGGC 2 cut(s) 733, 857
PdmI GAANNNNTTC 3 cut(s) 558, 665, 1572
PfeI GAWTC 6 cut(s) 1097, 1326, 1334, 1406, 2218, 2230
PflFI GACNNNGTC 1 cut(s) 1810
PflMI CCANNNNNTGG 1 cut(s) 1802
PfoI TCCNGGA 1 cut(s) 1613
PkrI GCNGC 4 cut(s) 176, 2077, 2132, 2278
PleI GAGTC 3 cut(s) 547, 1479, 1904
PpsI GAGTC 3 cut(s) 547, 1479, 1904
Ppu21I YACGTR 1 cut(s) 43
PscI ACATGT 3 cut(s) 321, 465, 1345
PsiI TTATAA 2 cut(s) 923, 2290
Psp1406I AACGTT 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 1613
PspFI CCCAGC 3 cut(s) 238, 1859, 2018
PspGI CCWGG 1 cut(s) 1613
PspN4I GGNNCC 6 cut(s) 223, 278, 1427, 1657, 1794, 2007
PspPI GGNCC 5 cut(s) 222, 729, 1037, 1812, 2182
PstI CTGCAG 1 cut(s) 2281
PsuI RGATCY 2 cut(s) 787, 2281
PsyI GACNNNGTC 1 cut(s) 1810
PvuII CAGCTG 2 cut(s) 1010, 2133
RigI GGCCGGCC 1 cut(s) 735
RruI TCGCGA 1 cut(s) 1602
RsaI GTAC 6 cut(s) 45, 326, 629, 1025, 1074, 1114
RsaNI GTAC 6 cut(s) 44, 325, 628, 1024, 1073, 1113
RseI CAYNNNNRTG 3 cut(s) 1173, 1344, 1482
SapI GCTCTTC 1 cut(s) 1647
SaqAI TTAA 5 cut(s) 489, 701, 815, 1374, 1964
SatI GCNGC 4 cut(s) 175, 2076, 2131, 2277
Sau3AI GATC 8 cut(s) 766, 787, 996, 1078, 1357, 1843, 2263, 2281
Sau96I GGNCC 5 cut(s) 222, 729, 1037, 1812, 2182
ScaI AGTACT 1 cut(s) 1074
SchI GAGTC 3 cut(s) 548, 1480, 1904
ScrFI CCNGG 2 cut(s) 359, 1615
SduI GDGCHC 2 cut(s) 873, 1827
SfaNI GCATC 5 cut(s) 225, 340, 449, 1114, 1908
SfcI CTRYAG 2 cut(s) 1518, 2277
SinI GGWCC 3 cut(s) 222, 1812, 2182
SmiI ATTTAAAT 1 cut(s) 1965
SmiMI CAYNNNNRTG 3 cut(s) 1173, 1344, 1482
SmlI CTYRAG 1 cut(s) 1997
SmoI CTYRAG 1 cut(s) 1997
SnaBI TACGTA 1 cut(s) 43
SphI GCATGC 1 cut(s) 828
SsiI CCGC 1 cut(s) 33
SspMI CTAG 5 cut(s) 533, 633, 1082, 1101, 1809
StyD4I CCNGG 2 cut(s) 357, 1613
SwaI ATTTAAAT 1 cut(s) 1965
TaaI ACNGT 4 cut(s) 1519, 1674, 2092, 2249
TaiI ACGT 6 cut(s) 45, 550, 600, 1029, 1162, 1721
TaqI TCGA 5 cut(s) 329, 366, 1275, 1842, 1881
TatI WGTACW 4 cut(s) 324, 627, 1072, 1112
TfiI GAWTC 6 cut(s) 1097, 1326, 1334, 1406, 2218, 2230
Tru1I TTAA 5 cut(s) 489, 701, 815, 1374, 1964
Tru9I TTAA 5 cut(s) 489, 701, 815, 1374, 1964
TscAI CASTG 7 cut(s) 193, 701, 826, 835, 984, 1522, 1677
TseFI GTSAC 3 cut(s) 117, 638, 671
TseI GCWGC 4 cut(s) 174, 2075, 2130, 2276
Tsp45I GTSAC 3 cut(s) 117, 638, 671
TspGWI ACGGA 1 cut(s) 1804
TspRI CASTG 7 cut(s) 193, 701, 826, 835, 984, 1522, 1677
Tth111I GACNNNGTC 1 cut(s) 1810
Van91I CCANNNNNTGG 1 cut(s) 1802
VpaK11BI GGWCC 3 cut(s) 222, 1812, 2182
XapI RAATTY 6 cut(s) 209, 332, 1865, 1960, 1966, 2202
XbaI TCTAGA 1 cut(s) 632
XceI RCATGY 5 cut(s) 325, 469, 828, 1349, 1951
XmnI GAANNNNTTC 3 cut(s) 558, 665, 1572
XspI CTAG 5 cut(s) 533, 633, 1082, 1101, 1809
ZraI GACGTC 1 cut(s) 1160
ZrmI AGTACT 1 cut(s) 1074
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.