FvH4_6g24610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006655
Physical Location & Seq
Forward (+)
18676270 .. 18679988
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24610.t3

Sequence Viewer

Length: 390 bp
ATGGAGTGCAAGCAAGATAAAGTTCTGCATGATATGGATGAAAACCAGAAAATGAATGAAGAAGGTGTAACACATCAAATTCCTGATTTGAACCCGTTCTCAAGTTCTCCAGATCCTAAAGTGCAAGCTAATACAGTTGATTGGGGAGGTGGAAAAGATATTGTACCTTCTGACGATATAGATGCGTCTGGTGAAGTAAACATGGAGGCATCAATAACATCTGATGATGTTATACGGGCTGGAGGCTTTGGTGCTAGAGATGATATAAGTAGTTTTCTTCCTGTCGCAAGTGATTCTACTGATTTTGAAGCTACGATACGTGATGCTCGAGACTATGAAGAACCACAGGGAGATATCTGTAGACCAGGTCTAGGCTGGACAAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

4.12

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 361
AclWI GGATC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 78
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 91, 308
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 128, 311, 387
AluI AGCT 3 cut(s) 128, 311, 387
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 327
ApoI RAATTY 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 300, 332
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 3 cut(s) 255, 371, 388
BfmI CTRYAG 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 366
BmeT110I CYCGRG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 172, 218, 313
BpmI CTGGAG 2 cut(s) 93, 261
BpuEI CTTGAG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 324
BsoBI CYCGRG 1 cut(s) 327
Bsp143I GATC 1 cut(s) 112
BspPI GGATC 1 cut(s) 107
BssMI GATC 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 11, 126
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtsCI GGATG 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 11, 126
CseI GACGC 1 cut(s) 174
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 29, 202
CviJI RGCY 6 cut(s) 128, 239, 246, 311, 375, 387
CviKI_1 RGCY 6 cut(s) 128, 239, 246, 311, 375, 387
CviQI GTAC 1 cut(s) 164
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco32I GATATC 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 355
FaeI CATG 2 cut(s) 32, 205
FaiI YATR 7 cut(s) 30, 35, 179, 203, 233, 266, 336
FatI CATG 2 cut(s) 28, 201
FblI GTMKAC 1 cut(s) 361
FokI GGATG 1 cut(s) 50
FspBI CTAG 3 cut(s) 255, 371, 388
GsuI CTGGAG 2 cut(s) 93, 261
HgaI GACGC 1 cut(s) 174
Hin1II CATG 2 cut(s) 32, 205
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 199, 362
Hpy188I TCNGA 2 cut(s) 172, 223
Hpy188III TCNNGA 3 cut(s) 83, 110, 329
Hpy8I GTNNAC 2 cut(s) 199, 362
HpyAV CCTTC 2 cut(s) 56, 177
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 9, 28, 124
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 32, 205
Kzo9I GATC 1 cut(s) 112
LweI GCATC 3 cut(s) 172, 218, 313
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 3 cut(s) 255, 371, 388
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 71, 269, 350
MflI RGATCY 1 cut(s) 112
MluCI AATT 1 cut(s) 78
MnlI CCTC 3 cut(s) 140, 199, 236
MroXI GAANNNNTTC 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
NdeII GATC 1 cut(s) 112
NlaIII CATG 2 cut(s) 32, 205
PaeR7I CTCGAG 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 366
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 366
SetI ASST 8 cut(s) 67, 130, 151, 169, 313, 322, 370, 389
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 3 cut(s) 172, 218, 313
SfcI CTRYAG 1 cut(s) 358
Sfr274I CTCGAG 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 100, 327
SmoI CTYRAG 2 cut(s) 100, 327
Sse9I AATT 1 cut(s) 78
SspMI CTAG 3 cut(s) 255, 371, 388
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 328
TasI AATT 1 cut(s) 78
TfiI GAWTC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 54, 68, 72, 351
Tth111I GACNNNGTC 1 cut(s) 366
XapI RAATTY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XhoI CTCGAG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 3 cut(s) 255, 371, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.