Rh3DG288100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006655
Physical Location & Seq
Forward (+)
29711284 .. 29712200
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG288100.1

Sequence Viewer

Length: 399 bp
ATGATACAAAACGGCGAGATATTAAGGTCAAGCTCACATAAGGATGAAAACCAGACAAGGAATGAGGAAGGTGTAACATATCAAATTCCTGTTTTGAAACCGTTCTCAAGTTCTCCAGATATTGAAGTGCAATTAGCTAATGCGGTTGATTGGGGAGGTGGAAAACACATTGTACCTTCTGGAGATATCGATGCCTCTGGTGAAGTAAACACGGAGGCATCAATAACACCTGATGACGTTATACGGGCTGGAGGCTTTGGTGCTAGAGATGATATAAGTAGTTTTCTTCCTGTCGCGAGTGATTCTACTGATTTTGAAGCTACCATACGTGATGCCCGAGACTCTGAAGAACCACAGCGAGATATCTGTAGACCAGGTCTTGGCTGGACGAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.25

Weight (kDa)

4.38

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 380
AccI GTMKAC 1 cut(s) 370
AccII CGCG 1 cut(s) 296
AciI CCGC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 366
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 3 cut(s) 97, 125, 317
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 33, 137, 320, 396
AluI AGCT 4 cut(s) 33, 137, 320, 396
Alw26I GTCTC 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 336
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
BceAI ACGGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 2 cut(s) 264, 397
BfmI CTRYAG 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 375
BmeT110I CYCGRG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 181, 227, 322
BpmI CTGGAG 3 cut(s) 99, 201, 270
BpuEI CTTGAG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 380
BseBI CCWGG 1 cut(s) 375
BseCI ATCGAT 1 cut(s) 189
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 333
BsoBI CYCGRG 1 cut(s) 336
Bsp68I TCGCGA 1 cut(s) 296
BspACI CCGC 1 cut(s) 143
BspDI ATCGAT 1 cut(s) 189
BspFNI CGCG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 329
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 333
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 1 cut(s) 296
Bsu15I ATCGAT 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 189
BtsCI GGATG 1 cut(s) 49
BtuMI TCGCGA 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 189
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 1 cut(s) 173
CviJI RGCY 7 cut(s) 33, 137, 248, 255, 320, 384, 396
CviKI_1 RGCY 7 cut(s) 33, 137, 248, 255, 320, 384, 396
CviQI GTAC 1 cut(s) 173
Eco32I GATATC 2 cut(s) 187, 364
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 2 cut(s) 187, 364
FaiI YATR 5 cut(s) 39, 79, 242, 275, 326
FblI GTMKAC 1 cut(s) 370
FokI GGATG 1 cut(s) 56
FspBI CTAG 2 cut(s) 264, 397
GsuI CTGGAG 3 cut(s) 99, 201, 270
HinfI GANTC 2 cut(s) 302, 341
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 208, 371
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 116, 180, 295
Hpy8I GTNNAC 2 cut(s) 208, 371
HpyAV CCTTC 2 cut(s) 62, 186
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 2 cut(s) 237, 328
HpyCH4V TGCA 1 cut(s) 130
HpySE526I ACGT 2 cut(s) 237, 328
LweI GCATC 3 cut(s) 181, 227, 322
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 2 cut(s) 264, 397
MaeII ACGT 2 cut(s) 237, 328
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 2 cut(s) 278, 359
MluCI AATT 2 cut(s) 84, 131
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 5 cut(s) 58, 149, 205, 208, 245
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 296
NruI TCGCGA 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 375
PflMI CCANNNNNTGG 1 cut(s) 380
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 375
RruI TCGCGA 1 cut(s) 296
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 1 cut(s) 23
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 375
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 3 cut(s) 181, 227, 322
SfcI CTRYAG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 84, 131
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 264, 397
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 2 cut(s) 240, 331
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 84, 131
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 227
Tth111I GACNNNGTC 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 380
XapI RAATTY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 264, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.