Rh3CG292300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006655
Physical Location & Seq
Forward (+)
29794391 .. 29803647
9257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG292300.1

Sequence Viewer

Length: 393 bp
ATGGAGCGCAAGCAGGATGAAGTTCTGCATGATAAGGATGAAAACCAGACAAGGAATGAGGAAGGTGTAACAGATCAAATTGCTGTTTTGAAACCGTTCTCAAGTTCTCCAGATATTGAAGTGCAATTAGCTAATGCGGTTGATTGGGGAGGTGGAAAACACATTGTACCTTCTGGAGATATAGATGCCTCTGGTGAAGTAAACATGGAGGCATCAATAACACCTGATGACGTTATACGGGCTGGAGGCTTTGGTGCTAGAGATGATATAAGTAGTTTTCTTCCTGTCGCGAGTGATTGTACTGATTTTGAAGCTACCATACGTGATGCCCGAGACTATGAAGAACCACAGCGAGATATCTGTAGACCAGGTCTTGGTTGGACGAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

4.28

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 364
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 137
AfaI GTAC 2 cut(s) 168, 301
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 3 cut(s) 91, 119, 311
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 3 cut(s) 131, 314, 390
AluI AGCT 3 cut(s) 131, 314, 390
Alw26I GTCTC 1 cut(s) 327
Ama87I CYCGRG 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 2 cut(s) 258, 391
BfmI CTRYAG 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 3 cut(s) 175, 221, 316
BpmI CTGGAG 3 cut(s) 93, 195, 264
BpuEI CTTGAG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 22, 43
BseLI CCNNNNNNNGG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 330
Bsp143I GATC 1 cut(s) 73
Bsp68I TCGCGA 1 cut(s) 290
BspACI CCGC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 290
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 11
BstF5I GGATG 2 cut(s) 22, 43
BstFNI CGCG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 361
BstUI CGCG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 22, 43
BtuMI TCGCGA 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 9
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 2 cut(s) 167, 300
CviAII CATG 2 cut(s) 29, 205
CviJI RGCY 5 cut(s) 131, 242, 249, 314, 390
CviKI_1 RGCY 5 cut(s) 131, 242, 249, 314, 390
CviQI GTAC 2 cut(s) 167, 300
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 1 cut(s) 358
FaeI CATG 2 cut(s) 32, 208
FaiI YATR 7 cut(s) 30, 182, 206, 236, 269, 320, 339
FatI CATG 2 cut(s) 28, 204
FblI GTMKAC 1 cut(s) 364
FokI GGATG 2 cut(s) 29, 50
FspBI CTAG 2 cut(s) 258, 391
GlaI GCGC 1 cut(s) 8
GsuI CTGGAG 3 cut(s) 93, 195, 264
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 32, 208
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 2 cut(s) 202, 365
Hpy188III TCNNGA 3 cut(s) 110, 174, 289
Hpy8I GTNNAC 2 cut(s) 202, 365
HpyAV CCTTC 2 cut(s) 56, 180
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 231, 322
HpyCH4V TGCA 2 cut(s) 28, 124
HpySE526I ACGT 2 cut(s) 231, 322
Hsp92II CATG 2 cut(s) 32, 208
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 9 cut(s) 59, 123, 159, 177, 228, 237, 297, 354, 381
LweI GCATC 3 cut(s) 175, 221, 316
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 2 cut(s) 258, 391
MaeII ACGT 2 cut(s) 231, 322
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 272, 353
MluCI AATT 2 cut(s) 78, 125
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 5 cut(s) 52, 143, 199, 202, 239
MroXI GAANNNNTTC 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 290
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 32, 208
NruI TCGCGA 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 369
PflMI CCANNNNNTGG 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PsyI GACNNNGTC 1 cut(s) 369
RruI TCGCGA 1 cut(s) 290
RsaI GTAC 2 cut(s) 168, 301
RsaNI GTAC 2 cut(s) 167, 300
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 369
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 3 cut(s) 175, 221, 316
SfcI CTRYAG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 2 cut(s) 78, 125
SsiI CCGC 1 cut(s) 137
SspMI CTAG 2 cut(s) 258, 391
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 234, 325
TasI AATT 2 cut(s) 78, 125
TatI WGTACW 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 33, 54, 354
Tth111I GACNNNGTC 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XmiI GTMKAC 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 258, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.