Rh3DG287900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0006655
Physical Location & Seq
Forward (+)
29705051 .. 29709570
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG287900.1

Sequence Viewer

Length: 447 bp
ATGGGCTACCACCAGCGCAACCTGAAGGCCTCACCAAACGTGTCCTACAAGTCAGATGACACGTTGAACTTTCGTGACGCTGATATGCAAAATATCCTTTCCATCCATCCCTCTCGATTTTCAATTGCAAAGCAGAGCAGAGCTACTCTCTTCCTGAATCCCACTCCCGCTTCCAGGTTTGTTTTGGAAGAAACATTGAAGGCCCTTATAGTGAAGTTCTGCATGGTATTTGTTATTCATAGATCATTCAAGTATTTCTTGTGCTATATTCCAGCCATGGAGTTTTATGCTAGGTATTTTGTTCATATTGGAGTGTATATGCTGAATTCACTTCGTGTACAATTGCATGCACAAGTTTTTAGAGTCATCTTTGATAAAGTTTCTTATAGTGACAGGAGTAGTTTAGATGTTATGGGGAAGAGGAATTTCGTAATCATAGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.4

Weight (kDa)

9.69

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AcsI RAATTY 2 cut(s) 325, 424
AcuI CTGAAG 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 174
AflIII ACRYGT 2 cut(s) 39, 60
AgsI TTSAA 4 cut(s) 67, 123, 199, 250
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 2 cut(s) 27, 201
ApoI RAATTY 2 cut(s) 325, 424
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 24
BccI CCATC 2 cut(s) 110, 114
BciT130I CCWGG 1 cut(s) 175
BfaI CTAG 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 102, 106
BseLI CCNNNNNNNGG 1 cut(s) 174
BshFI GGCC 2 cut(s) 29, 203
BslI CCNNNNNNNGG 1 cut(s) 174
BsnI GGCC 2 cut(s) 29, 203
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 168
BspANI GGCC 2 cut(s) 29, 203
BsrGI TGTACA 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 155, 413
BstAUI TGTACA 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 102, 106
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 173
BsuRI GGCC 2 cut(s) 29, 203
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 102, 106
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 338
CviAII CATG 3 cut(s) 223, 277, 347
CviJI RGCY 5 cut(s) 6, 29, 143, 203, 275
CviKI_1 RGCY 5 cut(s) 6, 29, 143, 203, 275
CviQI GTAC 1 cut(s) 338
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DraIII CACNNNGTG 1 cut(s) 335
Eam1104I CTCTTC 2 cut(s) 155, 413
EarI CTCTTC 2 cut(s) 155, 413
Eco130I CCWWGG 1 cut(s) 276
Eco147I AGGCCT 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 226, 280, 350
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 3 cut(s) 222, 276, 346
FauI CCCGC 1 cut(s) 175
FokI GGATG 2 cut(s) 89, 93
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 29, 203
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 18
Hin1II CATG 3 cut(s) 226, 280, 350
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 2 cut(s) 157, 363
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 74, 114, 154
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 19, 193
HpyCH4IV ACGT 2 cut(s) 39, 62
HpyCH4V TGCA 5 cut(s) 88, 128, 222, 346, 350
HpySE526I ACGT 2 cut(s) 39, 62
Hsp92II CATG 3 cut(s) 226, 280, 350
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 7 cut(s) 26, 35, 160, 167, 187, 285, 379
MaeI CTAG 1 cut(s) 291
MaeII ACGT 2 cut(s) 39, 62
MaeIII GTNAC 2 cut(s) 74, 389
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 3 cut(s) 142, 200, 430
MfeI CAATTG 2 cut(s) 123, 341
MluCI AATT 4 cut(s) 123, 325, 341, 424
MlyI GAGTC 1 cut(s) 372
MnlI CCTC 3 cut(s) 40, 121, 414
MspR9I CCNGG 1 cut(s) 175
MunI CAATTG 2 cut(s) 123, 341
MvaI CCWGG 1 cut(s) 175
NcoI CCATGG 1 cut(s) 276
NdeII GATC 1 cut(s) 242
NlaIII CATG 3 cut(s) 226, 280, 350
NmuCI GTSAC 2 cut(s) 74, 389
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PceI AGGCCT 1 cut(s) 29
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 372
ScrFI CCNGG 1 cut(s) 175
SetI ASST 6 cut(s) 24, 42, 65, 145, 179, 296
SphI GCATGC 1 cut(s) 350
Sse9I AATT 4 cut(s) 123, 325, 341, 424
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 291
StuI AGGCCT 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 2 cut(s) 42, 65
TaqI TCGA 1 cut(s) 115
TasI AATT 4 cut(s) 123, 325, 341, 424
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 1 cut(s) 157
TseFI GTSAC 2 cut(s) 74, 389
Tsp45I GTSAC 2 cut(s) 74, 389
TspDTI ATGAA 2 cut(s) 227, 293
XapI RAATTY 2 cut(s) 325, 424
XceI RCATGY 1 cut(s) 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.