Rh3BG294500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006655
Physical Location & Seq
Reverse (-)
29568609 .. 29571290
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG294500.1

Sequence Viewer

Length: 390 bp
ATGGAGCGCAAGCAAGATGAAGTTCTGCATGTTAAGGATGAAAACCAGACAAGGAATGAGGAAGGTGTAACATATCAAATTCCTGTTTTGAAACCGTTCTCAAGTTCTCCAGATATTAAAGTGCAAGCTAATGCGGTTGATTGGGGAGGTGGAAAACACATTGTACCTTCTGGAGATATAGATGCCTCTGGTGAAGTAAACATGGAGGCATCAATAACACCCGATGACGTTATACGGGCTGGAGGCTTTGGTGCTAGAGATGATATAAGTAGTTTTCTTCCTGTCGCGAGTGATTCTACTGATTTTGAAGCTACAATACGTGATGCCCGAGACTATGAAGAACCACAGGGACATATCTGTAGACCAGGTCTTGGCTGGACGAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.07

Weight (kDa)

4.53

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 1 cut(s) 361
AccII CGCG 1 cut(s) 287
AciI CCGC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 78
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 91, 308
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 128, 311, 387
AluI AGCT 3 cut(s) 128, 311, 387
Alw26I GTCTC 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 327
ApoI RAATTY 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 300, 332
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 255, 388
BfmI CTRYAG 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 366
BmeT110I CYCGRG 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 3 cut(s) 172, 218, 313
BpmI CTGGAG 3 cut(s) 93, 192, 261
BpuEI CTTGAG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 363
BsoBI CYCGRG 1 cut(s) 327
Bsp68I TCGCGA 1 cut(s) 287
BspACI CCGC 1 cut(s) 134
BspFNI CGCG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 11, 126
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 358
BstUI CGCG 1 cut(s) 287
BtsCI GGATG 1 cut(s) 43
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 11, 126
CfoI GCGC 1 cut(s) 9
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 29, 202
CviJI RGCY 6 cut(s) 128, 239, 246, 311, 375, 387
CviKI_1 RGCY 6 cut(s) 128, 239, 246, 311, 375, 387
CviQI GTAC 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 2 cut(s) 32, 205
FaiI YATR 8 cut(s) 30, 73, 179, 203, 233, 266, 336, 354
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 28, 201
FblI GTMKAC 1 cut(s) 361
FokI GGATG 1 cut(s) 50
FspBI CTAG 2 cut(s) 255, 388
GlaI GCGC 1 cut(s) 8
GsuI CTGGAG 3 cut(s) 93, 192, 261
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 32, 205
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 199, 362
Hpy188III TCNNGA 3 cut(s) 110, 171, 286
Hpy8I GTNNAC 2 cut(s) 199, 362
HpyAV CCTTC 2 cut(s) 56, 177
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 2 cut(s) 228, 319
HpyCH4V TGCA 2 cut(s) 28, 124
HpySE526I ACGT 2 cut(s) 228, 319
Hsp92II CATG 2 cut(s) 32, 205
HspAI GCGC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 4
LweI GCATC 3 cut(s) 172, 218, 313
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 2 cut(s) 255, 388
MaeII ACGT 2 cut(s) 228, 319
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 2 cut(s) 269, 350
MluCI AATT 1 cut(s) 78
MnlI CCTC 5 cut(s) 52, 140, 196, 199, 236
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 2 cut(s) 33, 117
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MvnI CGCG 1 cut(s) 287
NlaIII CATG 2 cut(s) 32, 205
NruI TCGCGA 1 cut(s) 287
NspI RCATGY 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 293
PflFI GACNNNGTC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 371
Ppu21I YACGTR 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 366
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 33, 117
ScrFI CCNGG 1 cut(s) 366
SetI ASST 9 cut(s) 67, 130, 151, 169, 231, 313, 322, 370, 389
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 3 cut(s) 172, 218, 313
SfcI CTRYAG 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 134
SspMI CTAG 2 cut(s) 255, 388
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 2 cut(s) 231, 322
TasI AATT 1 cut(s) 78
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 33, 117
Tru9I TTAA 2 cut(s) 33, 117
TspDTI ATGAA 3 cut(s) 33, 54, 351
Tth111I GACNNNGTC 1 cut(s) 366
Van91I CCANNNNNTGG 1 cut(s) 371
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 255, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.