RLG00000023247

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006655
Physical Location & Seq
Reverse (-)
20486997 .. 20491395
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023247

Sequence Viewer

Length: 486 bp
ATGGTTGTATTAGGTTTGTTCCGAAGAAACATTGAAGGCCCTTATAGTGAAGAGAATTGCAAAATTAGATCCGACATGGAGCGCAAGCAAGATGAAGTTCTGCATGATAAGGATGAAAACCAGACAAGGAATGAGGAAGGTGTAACATATCAAATTTCTGTTTTGAAACCGTTCTCAAGTTCTCCAGATATTGAAGAGCAAGCTAATGCGGTTGATTGGGGAGGTGGAAAACACATTGTACCTTCTGGAGATATAGATGCCTCTGGTGAAGTAAACATGGAGGCATCAATAACACCTGATGACGTTATACGGGCTGGAGGCTTTGGTGCTAGAGATGATATAAGTCGTTTTCTTCCGGTCGCGAGTGATTCTACCGATTTTGAAGCCACCATACGTCCATACGTGATGCCCGAGACTATGAAGAACCACAAGGAGATATCTGTAGACCAGGTCTTGGCTGGACAAAAAGCTAGAGGAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.83

Weight (kDa)

4.7

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 454
AccI GTMKAC 1 cut(s) 444
AccII CGCG 1 cut(s) 362
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 153
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 4 cut(s) 35, 166, 194, 383
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 2 cut(s) 203, 470
AluI AGCT 2 cut(s) 203, 470
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BciT130I CCWGG 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 407
BfaI CTAG 2 cut(s) 330, 471
BfmI CTRYAG 1 cut(s) 441
Bme1390I CCNGG 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 3 cut(s) 247, 293, 396
BpmI CTGGAG 3 cut(s) 168, 267, 336
BpuEI CTTGAG 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 403
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 449
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 454
Bsh1236I CGCG 1 cut(s) 362
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 407
BsnI GGCC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 410
Bsp143I GATC 1 cut(s) 68
Bsp68I TCGCGA 1 cut(s) 362
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 39
BspFNI CGCG 1 cut(s) 362
BspPI GGATC 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 189
BssMI GATC 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 45, 189
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 86, 201
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 362
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 1 cut(s) 68
BstMCI CGRYCG 1 cut(s) 360
BstNI CCWGG 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 441
BstUI CGCG 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuRI GGCC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 118
BtuMI TCGCGA 1 cut(s) 362
Cac8I GCNNGC 2 cut(s) 86, 201
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 38
CsiI ACCWGGT 1 cut(s) 447
Csp6I GTAC 1 cut(s) 239
CviAII CATG 3 cut(s) 76, 104, 277
CviJI RGCY 7 cut(s) 39, 203, 314, 321, 386, 458, 470
CviKI_1 RGCY 7 cut(s) 39, 203, 314, 321, 386, 458, 470
CviQI GTAC 1 cut(s) 239
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eam1104I CTCTTC 2 cut(s) 45, 189
EarI CTCTTC 2 cut(s) 45, 189
Eco32I GATATC 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 410
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 447
EcoRV GATATC 1 cut(s) 438
FaeI CATG 3 cut(s) 79, 107, 280
FatI CATG 3 cut(s) 75, 103, 276
FblI GTMKAC 1 cut(s) 444
FokI GGATG 1 cut(s) 125
FspBI CTAG 2 cut(s) 330, 471
GlaI GCGC 1 cut(s) 83
GsuI CTGGAG 3 cut(s) 168, 267, 336
HaeIII GGCC 1 cut(s) 39
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 79, 107, 280
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 274, 445
Hpy188I TCNGA 2 cut(s) 23, 73
Hpy188III TCNNGA 3 cut(s) 185, 246, 361
Hpy8I GTNNAC 2 cut(s) 274, 445
HpyAV CCTTC 3 cut(s) 29, 131, 252
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 3 cut(s) 303, 394, 402
HpyCH4V TGCA 2 cut(s) 60, 103
HpySE526I ACGT 3 cut(s) 303, 394, 402
Hsp92II CATG 3 cut(s) 79, 107, 280
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 68
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 79
LweI GCATC 3 cut(s) 247, 293, 396
MabI ACCWGGT 1 cut(s) 447
MaeI CTAG 2 cut(s) 330, 471
MaeII ACGT 3 cut(s) 303, 394, 402
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 5 cut(s) 36, 62, 206, 344, 433
MflI RGATCY 1 cut(s) 68
MluCI AATT 3 cut(s) 55, 63, 153
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 6 cut(s) 127, 215, 271, 274, 311, 467
MroXI GAANNNNTTC 1 cut(s) 170
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 362
NdeII GATC 1 cut(s) 68
NlaIII CATG 3 cut(s) 79, 107, 280
NruI TCGCGA 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 368
PflFI GACNNNGTC 1 cut(s) 449
PflMI CCANNNNNTGG 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 68
PsyI GACNNNGTC 1 cut(s) 449
RruI TCGCGA 1 cut(s) 362
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 449
SexAI ACCWGGT 1 cut(s) 447
SfaNI GCATC 3 cut(s) 247, 293, 396
SfcI CTRYAG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 3 cut(s) 55, 63, 153
SsiI CCGC 1 cut(s) 209
SspMI CTAG 2 cut(s) 330, 471
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 3 cut(s) 306, 397, 405
TasI AATT 3 cut(s) 55, 63, 153
TfiI GAWTC 1 cut(s) 368
TspDTI ATGAA 3 cut(s) 108, 129, 434
Tth111I GACNNNGTC 1 cut(s) 449
Van91I CCANNNNNTGG 1 cut(s) 454
XapI RAATTY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 2 cut(s) 330, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.