FvH4_6g27410

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010750
Physical Location & Seq
Reverse (-)
21039814 .. 21043746
3933 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27410.t1

Sequence Viewer

Length: 318 bp
ATGGAGGATGGCAAAGAGCCACGAGTTGAGCAATCAGAACAACCATCTCCAGAGGAGGAAGAGGTTCTAAAGAAAAAGTATGGTGGAATCATTCCAAAGAAACCACCACTGATTTCTAAGGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCTCTTGGAAAGCAAGGTGTTGAGAAGCCTAAAGGACCACTTGAAGCCCTTCGACCGAAACTACAGCCTACACAACAGCAAACACGATACAGAAAGTCCCCTTGTGCTCCATCGGGTGAAGATGGAGGAAGTTCTCCCTCTGAGGACGCATCTGCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

106

Amino Acids

11.57

Weight (kDa)

5.5

Isoelectric Point (pI)

70.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 18 - 85 1.9e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 265
Asp700I GAANNNNTTC 2 cut(s) 63, 204
AspS9I GGNCC 2 cut(s) 121, 191
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 2 cut(s) 121, 191
BanII GRGCYC 1 cut(s) 160
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 265
BccI CCATC 4 cut(s) 2, 52, 272, 274
BfmI CTRYAG 1 cut(s) 218
Bme18I GGWCC 2 cut(s) 121, 191
BmgT120I GGNCC 2 cut(s) 121, 191
BmsI GCATC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 33
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 160, 265
BspCNI CTCAG 1 cut(s) 289
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 117, 297
BstF5I GGATG 1 cut(s) 13
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 121, 191
CseI GACGC 1 cut(s) 311
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 19, 158, 184, 203, 223
CviKI_1 RGCY 5 cut(s) 19, 158, 184, 203, 223
DdeI CTNAG 2 cut(s) 117, 297
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 121, 191
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 1 cut(s) 128
FaiI YATR 2 cut(s) 81, 126
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 124
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 33
HgaI GACGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 128
HinfI GANTC 2 cut(s) 87, 143
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 37, 298
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 117, 297
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 1 cut(s) 128
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 1 cut(s) 63
LweI GCATC 1 cut(s) 314
MaeII ACGT 1 cut(s) 130
MboII GAAGA 2 cut(s) 71, 287
MhlI GDGCHC 2 cut(s) 160, 265
MluCI AATT 1 cut(s) 313
MnlI CCTC 6 cut(s) 46, 49, 55, 275, 292, 304
MroXI GAANNNNTTC 2 cut(s) 63, 204
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 155
NlaIII CATG 1 cut(s) 128
PdmI GAANNNNTTC 2 cut(s) 63, 204
PfeI GAWTC 2 cut(s) 87, 143
PspPI GGNCC 2 cut(s) 121, 191
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 316
Sau96I GGNCC 2 cut(s) 121, 191
SduI GDGCHC 2 cut(s) 160, 265
SetI ASST 3 cut(s) 66, 133, 175
SfaNI GCATC 1 cut(s) 314
SfcI CTRYAG 1 cut(s) 218
SinI GGWCC 2 cut(s) 121, 191
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 1 cut(s) 313
TaiI ACGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 208
TaqII GACCGA 1 cut(s) 226
TasI AATT 1 cut(s) 313
TfiI GAWTC 2 cut(s) 87, 143
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 141
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 121, 191
XmnI GAANNNNTTC 2 cut(s) 63, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.