Rorug02G0289100

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010750
Physical Location & Seq
Reverse (-)
31610403 .. 31611890
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0289100.1

Sequence Viewer

Length: 1488 bp
ATGGAAGACAGCAACAAGTATTGTTCCGGCGGCTCTTGTTCCGGGAGCAATATGACGAAGAAGTCAGATAGTCATAAGAATTGTTTGAGTAAATATGTCATGCCTGGAAGTGAACTTTGGACAGAGGGCCTTATCTGTGCTTTTGAGTTCATTCAAGGACGAAACAAACCAAGCAGTTTGAAATCTGGTGATAGGAACAAGTCCCGAAGTGGTGCTCATGATGGTGAAAGAGAGGGTGGTCTTTGGGTGCCAATTGGGTGGGCTAGAATTTCAAAAATAGTCCAAACTGTGCAAGCTGATGCACAACAGTTTGGCATTGATGATGAAGATGACTACTTCACTGTTGCAGACTTAGCAGCTCGGCCTGTTTGGTGGTGCCATGTCCTTGCAGGTCACCCCTCAGTTGATGCTTGGCTCCGTAATGCCCACTGGCTACATCCTGCTGTCAGTTTAGCTTTAACAGATGAAAATTTACTGATTAGTGACAGGATGAAACACCTTTTGTATGAGGTCCCAGTTAGAGTTTCTGGGGGGTTGTTATTTGAGCTCTTGGGACACTCATTTGGTGTTCCATTTGTCGACGAGAATGATATTCCCATTGTACTTCGTTCCTGGCAAGCCCAAAACTTCCTTGTAACTGTTTTGCATATCAAAGGGCCTATATCAAATATAAATGTGTTGGGCATCAAAGAAGTTGAGGAACTTCTTTCCGCTGGAAGCTATAATGTACCTAGAACAGTGCATGAAGTCATAGCACATCTAACTAGCCGCCTTGCTCGATGGGATGATAGGCTATTCCGCAAGTCCATATTTGGTGCCGTAGATGAGTTTGAATTGAAGTTTATGAACATGAGAAACCATGAAGAGATAAATCTATTTAGCATAATTCTCAACCAAGAGATCAGAGAGTTATCAAAACAGGTCATCAGAGTAAAGTGGTCACTTCATGCAAGAGAGGAGATTCTGTTTGAGCTTCTTGAACATTTGAGAGGAAATACAACAAGAAGTTTGCTGGAGAAAATAAGAAAGAGCACAAGGGAAATGATTGAGGAGCAAGAAAAAGTTAGTGGCCGCTTATTTACAGTTCAAGATGTGATGCAGAGCACTGTTCGTGCATGGTTGCAGGACAGAAGCCTTAGAGTGACACATAATCTTGGTGTTTTTGGTGGCTGTGGCCTTGTAATTTCCATCATCACTGGACTTTTTGGAATCAATGTTGATGGAATGCCTGGAGCAAAAAATGCACCATATGCCTTCGCTGTATTTTCAGCCATTCTCTTCTTTATTGGATTCGTGCTTATTCGACTCGGCAACCTTTACCTTGGGTTGAAAAAGCCTATTTCCGAAAAGCAAGTTGAAGCTAGAAAGTCAGAGCTTCAAGAGTTGGTTCAGAAGTTTCAGCACGAGGCAGAGACTCATGCCCTGGTTCGTAAAAATGTGGCTAGGAATAATTTACCCCCAACAATGGGAGATGCATATCCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

495

Amino Acids

55.89

Weight (kDa)

7.02

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 299 - 433 3.3e-09 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 380
AccB1I GGYRCC 3 cut(s) 247, 375, 815
AccI GTMKAC 1 cut(s) 579
AciI CCGC 5 cut(s) 30, 711, 769, 799, 1072
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 2 cut(s) 267, 469
AfaI GTAC 2 cut(s) 603, 729
AfiI CCNNNNNNNGG 2 cut(s) 1465, 1466
AjnI CCWGG 4 cut(s) 103, 611, 1228, 1422
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 8 cut(s) 296, 359, 455, 547, 720, 973, 1361, 1375
AluI AGCT 8 cut(s) 296, 359, 455, 547, 720, 973, 1361, 1375
Alw21I GWGCWC 4 cut(s) 217, 549, 1034, 1106
Alw26I GTCTC 1 cut(s) 1406
AoxI GGCC 5 cut(s) 127, 362, 656, 1069, 1174
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 267, 469
AspS9I GGNCC 3 cut(s) 127, 511, 656
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 200, 236, 386
AvaII GGWCC 1 cut(s) 511
BanI GGYRCC 3 cut(s) 247, 375, 815
BanII GRGCYC 1 cut(s) 549
BauI CACGAG 1 cut(s) 1403
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 4 cut(s) 217, 549, 1034, 1106
BbvI GCAGC 1 cut(s) 368
BccI CCATC 4 cut(s) 215, 774, 1196, 1214
BceAI ACGGC 1 cut(s) 803
BciT130I CCWGG 4 cut(s) 105, 613, 1230, 1424
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 1406
BfaI CTAG 5 cut(s) 264, 732, 765, 1362, 1443
BfuAI ACCTGC 1 cut(s) 380
BisI GCNGC 4 cut(s) 31, 357, 769, 1072
BlsI GCNGC 4 cut(s) 32, 358, 770, 1073
Bme1390I CCNGG 5 cut(s) 43, 105, 613, 1230, 1424
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 3 cut(s) 127, 511, 656
BmiI GGNNCC 5 cut(s) 249, 377, 416, 513, 817
BmrFI CCNGG 5 cut(s) 43, 105, 613, 1230, 1424
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 5 cut(s) 289, 397, 693, 1086, 1462
BmuI ACTGGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 1034, 1251
BpuMI CCSGG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 1476
BsaJI CCNNGG 2 cut(s) 1321, 1422
BsaXI ACNNNNNCTCC 2 cut(s) 950, 980
Bsc4I CCNNNNNNNGG 2 cut(s) 1465, 1466
Bse1I ACTGG 3 cut(s) 434, 515, 1201
Bse8I GATNNNNATC 1 cut(s) 1476
BseBI CCWGG 4 cut(s) 105, 613, 1230, 1424
BseDI CCNNGG 2 cut(s) 1321, 1422
BseGI GGATG 3 cut(s) 436, 495, 790
BseJI GATNNNNATC 1 cut(s) 1476
BseLI CCNNNNNNNGG 2 cut(s) 1465, 1466
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 3 cut(s) 434, 515, 1201
BseRI GAGGAG 2 cut(s) 971, 1064
BseXI GCAGC 1 cut(s) 368
BshFI GGCC 5 cut(s) 129, 364, 658, 1071, 1176
BshNI GGYRCC 3 cut(s) 247, 375, 815
BsiHKAI GWGCWC 4 cut(s) 217, 549, 1034, 1106
BsiSI CCGG 2 cut(s) 27, 42
BslFI GGGAC 3 cut(s) 187, 497, 567
BslI CCNNNNNNNGG 2 cut(s) 1465, 1466
BsmAI GTCTC 1 cut(s) 1406
BsmFI GGGAC 3 cut(s) 187, 497, 567
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 5 cut(s) 129, 364, 658, 1071, 1176
Bsp1286I GDGCHC 4 cut(s) 217, 549, 1034, 1106
Bsp143I GATC 1 cut(s) 900
BspACI CCGC 5 cut(s) 30, 711, 769, 799, 1072
BspANI GGCC 5 cut(s) 129, 364, 658, 1071, 1176
BspCNI CTCAG 1 cut(s) 413
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 5 cut(s) 249, 377, 416, 513, 817
BspMI ACCTGC 1 cut(s) 380
BspT107I GGYRCC 3 cut(s) 247, 375, 815
BsrI ACTGG 3 cut(s) 434, 515, 1201
BssECI CCNNGG 2 cut(s) 1321, 1422
BssMI GATC 1 cut(s) 900
BssSI CACGAG 1 cut(s) 1403
BssT1I CCWWGG 1 cut(s) 1321
Bst2BI CACGAG 1 cut(s) 1403
Bst2UI CCWGG 4 cut(s) 105, 613, 1230, 1424
Bst4CI ACNGT 7 cut(s) 289, 309, 343, 640, 739, 1084, 1108
Bst6I CTCTTC 2 cut(s) 858, 1283
BstAPI GCANNNNNTGC 2 cut(s) 1241, 1250
BstC8I GCNNGC 2 cut(s) 294, 618
BstDEI CTNAG 3 cut(s) 352, 400, 1136
BstEII GGTNACC 1 cut(s) 392
BstF5I GGATG 3 cut(s) 436, 495, 790
BstKTI GATC 1 cut(s) 903
BstMAI GTCTC 1 cut(s) 1406
BstMBI GATC 1 cut(s) 900
BstMWI GCNNNNNNNGC 3 cut(s) 353, 1241, 1250
BstNI CCWGG 4 cut(s) 105, 613, 1230, 1424
BstPI GGTNACC 1 cut(s) 392
BstSCI CCNGG 5 cut(s) 41, 103, 611, 1228, 1422
BstV1I GCAGC 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 258
BsuRI GGCC 5 cut(s) 129, 364, 658, 1071, 1176
BtsCI GGATG 3 cut(s) 436, 495, 790
BtsIMutI CAGTG 5 cut(s) 339, 427, 744, 1104, 1194
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 294, 618
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 3 cut(s) 127, 511, 656
Csp6I GTAC 2 cut(s) 602, 728
CviAII CATG 9 cut(s) 100, 218, 380, 743, 850, 860, 947, 1116, 1418
CviQI GTAC 2 cut(s) 602, 728
DdeI CTNAG 3 cut(s) 352, 400, 1136
DpnI GATC 1 cut(s) 902
DpnII GATC 1 cut(s) 900
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 2 cut(s) 858, 1283
EarI CTCTTC 2 cut(s) 858, 1283
Ecl136II GAGCTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 1321
Eco24I GRGCYC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 511
Eco53kI GAGCTC 1 cut(s) 547
Eco91I GGTNACC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 547
EcoO109I RGGNCCY 3 cut(s) 127, 511, 656
EcoO65I GGTNACC 1 cut(s) 392
EcoRII CCWGG 4 cut(s) 103, 611, 1228, 1422
EcoT14I CCWWGG 1 cut(s) 1321
EcoT22I ATGCAT 1 cut(s) 1477
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 1321
FaeI CATG 9 cut(s) 103, 221, 383, 746, 853, 863, 950, 1119, 1421
FaqI GGGAC 3 cut(s) 187, 497, 567
FatI CATG 9 cut(s) 99, 217, 379, 742, 849, 859, 946, 1115, 1417
FauNDI CATATG 1 cut(s) 1249
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 4 cut(s) 31, 357, 769, 1072
FokI GGATG 3 cut(s) 423, 502, 797
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 4 cut(s) 31, 357, 769, 1072
FspBI CTAG 5 cut(s) 264, 732, 765, 1362, 1443
GluI GCNGC 4 cut(s) 31, 357, 769, 1072
GsuI CTGGAG 2 cut(s) 1034, 1251
HaeIII GGCC 5 cut(s) 129, 364, 658, 1071, 1176
HapII CCGG 2 cut(s) 27, 42
Hin1II CATG 9 cut(s) 103, 221, 383, 746, 853, 863, 950, 1119, 1421
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 5 cut(s) 961, 1209, 1290, 1305, 1414
HpaII CCGG 2 cut(s) 27, 42
HphI GGTGA 3 cut(s) 200, 236, 386
Hpy166II GTNNAC 2 cut(s) 113, 580
Hpy188I TCNGA 6 cut(s) 67, 905, 929, 1345, 1372, 1392
Hpy188III TCNNGA 5 cut(s) 204, 218, 977, 1088, 1379
Hpy8I GTNNAC 2 cut(s) 113, 580
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 1 cut(s) 1264
HpyCH4III ACNGT 7 cut(s) 289, 309, 343, 640, 739, 1084, 1108
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 1241, 1250
HpyF3I CTNAG 3 cut(s) 352, 400, 1136
Hsp92II CATG 9 cut(s) 103, 221, 383, 746, 853, 863, 950, 1119, 1421
Kzo9I GATC 1 cut(s) 900
LmnI GCTCC 4 cut(s) 45, 420, 1051, 1232
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 5 cut(s) 289, 397, 693, 1086, 1462
MaeI CTAG 5 cut(s) 264, 732, 765, 1362, 1443
MaeIII GTNAC 5 cut(s) 392, 482, 634, 939, 1141
MalI GATC 1 cut(s) 902
MboI GATC 1 cut(s) 900
MboII GAAGA 5 cut(s) 17, 70, 338, 875, 1270
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 4 cut(s) 217, 549, 1034, 1106
MluCI AATT 8 cut(s) 79, 252, 267, 469, 833, 885, 1182, 1450
MlyI GAGTC 2 cut(s) 1299, 1408
MnlI CCTC 9 cut(s) 118, 226, 409, 502, 691, 949, 983, 1042, 1399
Mph1103I ATGCAT 1 cut(s) 1477
MseI TTAA 1 cut(s) 458
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 2 cut(s) 27, 42
MspR9I CCNGG 5 cut(s) 43, 105, 613, 1230, 1424
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 1230
MvaI CCWGG 4 cut(s) 105, 613, 1230, 1424
MwoI GCNNNNNNNGC 3 cut(s) 353, 1241, 1250
NciI CCSGG 1 cut(s) 43
NdeI CATATG 1 cut(s) 1249
NdeII GATC 1 cut(s) 900
NlaIII CATG 9 cut(s) 103, 221, 383, 746, 853, 863, 950, 1119, 1421
NlaIV GGNNCC 5 cut(s) 249, 377, 416, 513, 817
NmeAIII GCCGAG 2 cut(s) 340, 1287
NmuCI GTSAC 4 cut(s) 392, 482, 939, 1141
NsiI ATGCAT 1 cut(s) 1477
PagI TCATGA 1 cut(s) 217
PctI GAATGC 1 cut(s) 1230
PfeI GAWTC 3 cut(s) 961, 1209, 1290
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 32, 358, 770, 1073
PleI GAGTC 2 cut(s) 1299, 1408
PpsI GAGTC 2 cut(s) 1299, 1408
PpuMI RGGWCCY 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 4 cut(s) 103, 611, 1228, 1422
PspEI GGTNACC 1 cut(s) 392
PspGI CCWGG 4 cut(s) 103, 611, 1228, 1422
PspN4I GGNNCC 5 cut(s) 249, 377, 416, 513, 817
PspPI GGNCC 3 cut(s) 127, 511, 656
PspPPI RGGWCCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 603, 729
RsaNI GTAC 2 cut(s) 602, 728
RseI CAYNNNNRTG 1 cut(s) 222
SacI GAGCTC 1 cut(s) 549
SalI GTCGAC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 4 cut(s) 31, 357, 769, 1072
Sau3AI GATC 1 cut(s) 900
Sau96I GGNCC 3 cut(s) 127, 511, 656
SchI GAGTC 2 cut(s) 1299, 1408
ScrFI CCNGG 5 cut(s) 43, 105, 613, 1230, 1424
SduI GDGCHC 4 cut(s) 217, 549, 1034, 1106
SfaNI GCATC 5 cut(s) 289, 397, 693, 1086, 1462
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 8 cut(s) 79, 252, 267, 469, 833, 885, 1182, 1450
SsiI CCGC 5 cut(s) 30, 711, 769, 799, 1072
SspMI CTAG 5 cut(s) 264, 732, 765, 1362, 1443
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 5 cut(s) 41, 103, 611, 1228, 1422
StyI CCWWGG 1 cut(s) 1321
TaaI ACNGT 7 cut(s) 289, 309, 343, 640, 739, 1084, 1108
TaqI TCGA 3 cut(s) 579, 778, 1303
TasI AATT 8 cut(s) 79, 252, 267, 469, 833, 885, 1182, 1450
TatI WGTACW 1 cut(s) 601
TauI GCSGC 3 cut(s) 33, 771, 1074
TfiI GAWTC 3 cut(s) 961, 1209, 1290
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 5 cut(s) 346, 434, 744, 1111, 1201
TseFI GTSAC 4 cut(s) 392, 482, 939, 1141
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 4 cut(s) 392, 482, 939, 1141
TspDTI ATGAA 8 cut(s) 139, 339, 480, 506, 759, 860, 876, 935
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 5 cut(s) 346, 434, 744, 1111, 1201
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 2 cut(s) 267, 469
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 5 cut(s) 264, 732, 765, 1362, 1443
Zsp2I ATGCAT 1 cut(s) 1477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.