pycom09g15550

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010750
Physical Location & Seq
Forward (+)
15443267 .. 15444832
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15550.6

Sequence Viewer

Length: 327 bp
ATGGAGGACGGCAAAGAGCAACGGGTGGATGAGGGGTCTGAAAATTCTTCCCCACAGGAGGAGGAAGTTTTAAAGAAAAAGTATGGTGGAATCATTCCAAAAAAACCACCACTAATTTCGAAGGACCATGAACGTGCTTATTTTGATTCTGCTGATTGGGCACTTGGAAAGCAAGGGGTTGAGAAGCCAAAAGGACCACTTGAAGCCCTTCGGCCAAAACTACAGCCCACACAGCAGCAAACACGATACAGAAAGTCTCCTTGTGCTCCAGCAGATGGTGAAGATCGAGGAAGTGCCGCTTCTGAGGATACAGCTGCCACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

109

Amino Acids

11.91

Weight (kDa)

5.31

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AciI CCGC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 58, 275
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 235, 314
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 124, 194
AsuHPI GGTGA 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 124, 194
BaeGI GKGCMC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 247, 301
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 25
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 3 cut(s) 236, 297, 315
BlsI GCNGC 3 cut(s) 237, 298, 316
Bme18I GGWCC 2 cut(s) 124, 194
BmgT120I GGNCC 2 cut(s) 124, 194
BpmI CTGGAG 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 275
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 58, 275
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 247, 301
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 58, 275
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 163, 268
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 119
BssMI GATC 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 158, 232
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 247, 301
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 124, 194
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 187, 206, 214, 226, 314
CviKI_1 RGCY 5 cut(s) 187, 206, 214, 226, 314
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DraI TTTAAA 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 124, 194
FaeI CATG 1 cut(s) 131
FaiI YATR 2 cut(s) 84, 129
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 283, 315
FatI CATG 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 236, 297, 315
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 236, 297, 315
GluI GCNGC 3 cut(s) 236, 297, 315
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 1 cut(s) 131
HinfI GANTC 2 cut(s) 90, 146
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 40, 304
HpyAV CCTTC 2 cut(s) 115, 218
HpyCH4IV ACGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 232
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 2 cut(s) 41, 282
Lsp1109I GCAGC 2 cut(s) 247, 301
MaeII ACGT 1 cut(s) 133
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 39, 293
MhlI GDGCHC 2 cut(s) 163, 268
MluCI AATT 2 cut(s) 43, 114
MnlI CCTC 5 cut(s) 25, 52, 55, 281, 298
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 158, 232
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 131
NspV TTCGAA 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 90, 146
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 3 cut(s) 237, 298, 316
PspPI GGNCC 2 cut(s) 124, 194
PvuII CAGCTG 1 cut(s) 314
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 3 cut(s) 236, 297, 315
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 2 cut(s) 124, 194
SduI GDGCHC 2 cut(s) 163, 268
SetI ASST 2 cut(s) 136, 316
SfcI CTRYAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 119
SinI GGWCC 2 cut(s) 124, 194
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 43, 114
SsiI CCGC 1 cut(s) 297
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 119, 286
TasI AATT 2 cut(s) 43, 114
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 2 cut(s) 90, 146
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 325
TseI GCWGC 2 cut(s) 235, 314
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 124, 194
XapI RAATTY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.