AT5G64130

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006518
Physical Location & Seq
Reverse (-)
25664290 .. 25666393
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64130.1

Sequence Viewer

Length: 348 bp
ATGTCTAGCGCAGAGGATGTGAAAGAGCAAGGAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTCTCATTTCCAAGGATCATGAGCGAGCATACTTTGACTCAGCTGATTGGGCTCTTGGAAAGCAAGGTGTTGCGAAGCCAAAGGGACCCCTGGAAGCCCTTCGTCCCAAGTTACAGCCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

115

Amino Acids

12.3

Weight (kDa)

7.8

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 21 - 93 3.1e-24 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 263
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 173, 317
AluI AGCT 2 cut(s) 173, 317
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 153
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 3 cut(s) 253, 256, 317
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 31, 314
AvaII GGWCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 114, 184
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 3 cut(s) 265, 268, 304
BccI CCATC 3 cut(s) 73, 298, 302
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 6
BisI GCNGC 3 cut(s) 254, 257, 318
BlsI GCNGC 3 cut(s) 255, 258, 319
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 216, 217
BmrFI CCNGG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 141, 219, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 141, 219, 327
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 3 cut(s) 183, 285, 335
BseRI GAGGAG 2 cut(s) 95, 327
BseXI GCAGC 3 cut(s) 265, 268, 304
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 2 cut(s) 219, 228
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 219, 228
BsnI GGCC 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 114, 184, 289
Bsp143I GATC 1 cut(s) 145
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 3 cut(s) 182, 286, 334
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 216, 217
BspPI GGATC 1 cut(s) 153
BssECI CCNNGG 3 cut(s) 141, 219, 327
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 169, 294, 321
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 179, 253, 323
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 265, 268, 304
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 156
CciI TCATGA 1 cut(s) 148
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 215
CviAII CATG 3 cut(s) 115, 149, 282
CviJI RGCY 9 cut(s) 86, 112, 173, 182, 208, 227, 247, 317, 326
CviKI_1 RGCY 9 cut(s) 86, 112, 173, 182, 208, 227, 247, 317, 326
DdeI CTNAG 3 cut(s) 169, 294, 321
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 114, 184
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 114, 184
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 3 cut(s) 118, 152, 285
FaiI YATR 5 cut(s) 105, 116, 150, 160, 283
FaqI GGGAC 2 cut(s) 219, 228
FatI CATG 3 cut(s) 114, 148, 281
Fnu4HI GCNGC 3 cut(s) 254, 257, 318
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 2 cut(s) 114, 184
Fsp4HI GCNGC 3 cut(s) 254, 257, 318
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 254, 257, 318
HaeIII GGCC 1 cut(s) 326
HhaI GCGC 1 cut(s) 11
Hin1II CATG 3 cut(s) 118, 152, 285
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 1 cut(s) 167
HphI GGTGA 2 cut(s) 31, 314
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 253, 323
HpyF3I CTNAG 3 cut(s) 169, 294, 321
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 3 cut(s) 118, 152, 285
HspAI GCGC 1 cut(s) 9
KflI GGGWCCC 1 cut(s) 215
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 292, 314
LpnPI CCDG 6 cut(s) 62, 206, 233, 256, 308, 324
Lsp1109I GCAGC 3 cut(s) 265, 268, 304
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 240, 266
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 109, 317
MhlI GDGCHC 3 cut(s) 114, 184, 289
MlyI GAGTC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 179, 253, 323
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 118, 152, 285
NlaIV GGNNCC 2 cut(s) 216, 217
PagI TCATGA 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 3 cut(s) 255, 258, 319
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 216, 217
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 173
SatI GCNGC 3 cut(s) 254, 257, 318
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 3 cut(s) 114, 184, 289
SetI ASST 7 cut(s) 39, 133, 175, 199, 268, 319, 337
SinI GGWCC 1 cut(s) 215
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 268
TseI GCWGC 3 cut(s) 253, 256, 317
VpaK11BI GGWCC 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.