Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006518

Physical Location & Seq

Genomic Coordinates Forward (+)

49290023 .. 49291845

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0318900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGATGTGGGCTCTGCTTCATCTTCTCACCACCGCCCTCGTTTTCTCTTGGCCATTGACACCCGCCACTGCAAACTTAGAAGGGGATGCTCTCTTTGCTTTGAGAAGAGCTGTCAAGGACCCGAACAATGTTCTCCAGAGCTGGGATCCAACCCTGGTTGATCCCTGCACTTGGTTTCACGTCACCTGCGACGGCGATAATCGAGTCACTCGACTAGACCTTGGAAATGCAAACCTGGTCGGTAGTCTAGTACCTGAGCTGGGCAAGCTCGAACGCCTTCAATATCTGGAACTGTACATGAACAACTTGACTGGTTCTATACCAAAAGAGCTGGGAGGATTGAAGAGCCTTGTGAGCTTGGATCTCTACCACAACAACTTCACTGGGTCCATCCCTTCCTCGCTTTCCAACCTCTCCAATCTTAACTTCTTGCGGCTAAATGGTAACAGACTGACCGGAACTATACCGAGGAAACTTACAAAACTCGGAAGCCTCAAAATCTTTGATGTATCCAACAACGATTTATGTGGTACCTTCCCAACCTCAGGCTCCTTCTCCAAGTTCTCAGAAGAAAGTTTCAAGAATAACCCAAGATTGGAAGGACCAGAGCTGATGGGATTTGTCAGATACGATATTACAGGAAACTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endosulfine

Protein Analysis

218

Amino Acids

24.11

Weight (kDa)

6.82

Isoelectric Point (pI)

23.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 65	2.8e-12	Leucine rich repeat N-terminal domain
LRR_8	PF13855	69 - 128	5.1e-07	Leucine rich repeat
LRR_14	PF23598	73 - 173	1.5e-11	Leucine-rich repeat region
LRR_4	PF12799	93 - 134	4.6e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69510 AT1G69510 AT1G69510 AT5G64130
fragaria_vesca	FvH4_4g31111
malus_domestica	MD13G1069900.v1.1 MD16G1070200.v1.1
prunus_persica	Prupe.1G277000_v2.0.a1 Prupe.1G277000_v2.0.a1
pyrus_communis	pycom13g06270 pycom16g06110
rosa_chinensis	RchiOBHm_Chr4g0439501
rosa_laevigata	RLG00000006263
rosa_roxburghii	Rroxscaffold_5G00380420
rosa_rugosa	Rorug04G0318900 Rorug04G0319000 Rorug04G0319000 Rorug04G0319100 Rorug04G0319100 Rorug04G0319200.1 Rorug04G0319300
rosa_samantha	Rh4AG370200 Rh4BG382100 Rh4CG396700 Rh4DG376800
rosa_wichuraiana	Rw4G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	3 cut(s)	36, 66, 436
AclWI	GGATC	4 cut(s)	143, 156, 158, 372
AcoI	YGGCCR	1 cut(s)	53
AfaI	GTAC	3 cut(s)	255, 299, 535
AfiI	CCNNNNNNNGG	5 cut(s)	145, 174, 263, 548, 598
AgsI	TTSAA	3 cut(s)	284, 346, 583
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	156, 237
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	7 cut(s)	113, 144, 262, 271, 334, 360, 613
AluI	AGCT	7 cut(s)	113, 144, 262, 271, 334, 360, 613
AlwI	GGATC	4 cut(s)	143, 156, 158, 372
AoxI	GGCC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	279
Asp718I	GGTACC	1 cut(s)	533
AspS9I	GGNCC	3 cut(s)	121, 390, 605
AsuHPI	GGTGA	2 cut(s)	22, 178
AvaII	GGWCC	3 cut(s)	121, 390, 605
AxyI	CCTNAGG	1 cut(s)	547
BalI	TGGCCA	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	16
BccI	CCATC	2 cut(s)	401, 610
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	158, 239
BciVI	GTATCC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	218, 251
BfuAI	ACCTGC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	2 cut(s)	158, 239
Bme18I	GGWCC	3 cut(s)	121, 390, 605
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	121, 390, 605
BmiI	GGNNCC	5 cut(s)	123, 150, 391, 535, 553
BmrFI	CCNGG	2 cut(s)	158, 239
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	156, 223, 470
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 174, 263, 548, 598
Bse1I	ACTGG	2 cut(s)	319, 391
Bse21I	CCTNAGG	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	158, 239
BseDI	CCNNGG	3 cut(s)	156, 223, 470
BseGI	GGATG	2 cut(s)	94, 393
BseLI	CCNNNNNNNGG	5 cut(s)	145, 174, 263, 548, 598
BseMII	CTCAG	3 cut(s)	249, 561, 582
BseNI	ACTGG	2 cut(s)	319, 391
BseYI	CCCAGC	3 cut(s)	144, 262, 334
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	459
BslI	CCNNNNNNNGG	5 cut(s)	145, 174, 263, 548, 598
BsnI	GGCC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	148, 163, 364
BspACI	CCGC	3 cut(s)	36, 66, 436
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	250, 560, 581
BspLI	GGNNCC	5 cut(s)	123, 150, 391, 535, 553
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	4 cut(s)	143, 156, 158, 372
BspQI	GCTCTTC	2 cut(s)	103, 341
BspT107I	GGYRCC	1 cut(s)	533
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	319, 391
BssECI	CCNNGG	3 cut(s)	156, 223, 470
BssMI	GATC	3 cut(s)	148, 163, 364
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	158, 239
Bst4CI	ACNGT	1 cut(s)	297
Bst6I	CTCTTC	2 cut(s)	103, 341
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	4 cut(s)	79, 258, 547, 568
BstF5I	GGATG	2 cut(s)	94, 393
BstKTI	GATC	3 cut(s)	151, 166, 367
BstMBI	GATC	3 cut(s)	148, 163, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 98, 268, 357
BstNI	CCWGG	2 cut(s)	158, 239
BstSCI	CCNGG	2 cut(s)	156, 237
BstX2I	RGATCY	2 cut(s)	148, 364
BstYI	RGATCY	2 cut(s)	148, 364
Bsu36I	CCTNAGG	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	94, 393
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 384
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	121, 390, 605
CsiI	ACCWGGT	1 cut(s)	237
Csp6I	GTAC	3 cut(s)	254, 298, 534
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	3 cut(s)	254, 298, 534
DdeI	CTNAG	4 cut(s)	79, 258, 547, 568
DpnI	GATC	3 cut(s)	150, 165, 366
DpnII	GATC	3 cut(s)	148, 163, 364
EaeI	YGGCCR	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	103, 341
EarI	CTCTTC	2 cut(s)	103, 341
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	3 cut(s)	121, 390, 605
Eco81I	CCTNAGG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	156, 237
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	304
FaiI	YATR	4 cut(s)	302, 323, 467, 529
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	2 cut(s)	101, 380
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	2 cut(s)	218, 251
GluI	GCNGC	1 cut(s)	437
GsaI	CCCAGC	3 cut(s)	148, 266, 338
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	459
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	22, 178
Hpy188I	TCNGA	3 cut(s)	491, 571, 629
Hpy188III	TCNNGA	3 cut(s)	139, 290, 583
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	6 cut(s)	77, 290, 408, 547, 565, 596
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	74, 171, 233, 651
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 98, 268, 357
HpyF3I	CTNAG	4 cut(s)	79, 258, 547, 568
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	537
Kzo9I	GATC	3 cut(s)	148, 163, 364
LguI	GCTCTTC	2 cut(s)	103, 341
LmnI	GCTCC	1 cut(s)	557
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	237
MaeI	CTAG	2 cut(s)	218, 251
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	184, 208, 446
MalI	GATC	3 cut(s)	150, 165, 366
MboI	GATC	3 cut(s)	148, 163, 364
MboII	GAAGA	4 cut(s)	17, 120, 358, 584
MflI	RGATCY	2 cut(s)	148, 364
MhlI	GDGCHC	1 cut(s)	16
MlsI	TGGCCA	1 cut(s)	55
MluNI	TGGCCA	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	3 cut(s)	176, 435, 540
MnlI	CCTC	7 cut(s)	50, 332, 412, 425, 465, 506, 556
Mox20I	TGGCCA	1 cut(s)	55
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	55
MseI	TTAA	1 cut(s)	426
Msp20I	TGGCCA	1 cut(s)	55
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	2 cut(s)	158, 239
MvaI	CCWGG	2 cut(s)	158, 239
MwoI	GCNNNNNNNGC	4 cut(s)	11, 98, 268, 357
NdeII	GATC	3 cut(s)	148, 163, 364
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	5 cut(s)	123, 150, 391, 535, 553
NmuCI	GTSAC	2 cut(s)	184, 208
PaqCI	CACCTGC	1 cut(s)	197
PciSI	GCTCTTC	2 cut(s)	103, 341
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 211
PdmI	GAANNNNTTC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	156, 237
PspFI	CCCAGC	3 cut(s)	144, 262, 334
PspGI	CCWGG	2 cut(s)	156, 237
PspN4I	GGNNCC	5 cut(s)	123, 150, 391, 535, 553
PspPI	GGNCC	3 cut(s)	121, 390, 605
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	148, 364
RsaI	GTAC	3 cut(s)	255, 299, 535
RsaNI	GTAC	3 cut(s)	254, 298, 534
SapI	GCTCTTC	2 cut(s)	103, 341
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	3 cut(s)	148, 163, 364
Sau96I	GGNCC	3 cut(s)	121, 390, 605
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	158, 239
SduI	GDGCHC	1 cut(s)	16
SexAI	ACCWGGT	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	3 cut(s)	121, 390, 605
SsiI	CCGC	3 cut(s)	36, 66, 436
SspMI	CTAG	2 cut(s)	218, 251
StyD4I	CCNGG	2 cut(s)	156, 237
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	205, 214, 273
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	439
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	2 cut(s)	76, 391
TseFI	GTSAC	2 cut(s)	184, 208
Tsp45I	GTSAC	2 cut(s)	184, 208
TspDTI	ATGAA	2 cut(s)	11, 317
TspRI	CASTG	2 cut(s)	76, 391
VpaK11BI	GGWCC	3 cut(s)	121, 390, 605
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	218, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.