Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006518

Physical Location & Seq

Genomic Coordinates Reverse (-)

49299701 .. 49304494

Gene Structure 4794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTTGGGGATTATAAGGCAAAAACTGGGAGCTGGAACCTCATCTGCTACGATGCTGGGGCAGTTGCAGAGGATCCGCCCCGCCGCGTCGGCATTGAGAAGTTTCTCATCTTCTGCAAAAGAGCAGATGACAGTGAGGGATGCTCTAAACTCTGCCCTTGATGAGGAAATGTCCGCCGATCCGAAAGTGTTTTTGATGGGTGAAGAGGTTGGGGAGTATCAAGGTGCTTACAAGATAACTAAAGGACTTCTGGATAAGTATGGCCCTGAGAGGGTTCTCGATACCCCAATCACAGAGGCTGGATTTACTGGAATTGGAGTTGGTGCTGCTTACTATGGTCTGAAACCTGTTGTAGAGTTCATGACCTTCAACTTCTCAATGCAGGCAATTGACCATATCATCAATTCTGCTGCAAAATCAAATTATATGTCTGCTGGTCAAATAAATGTGCCCATTGTTTTCAGAGGTCCAAACGGTGCTGCTGCTGGTGTTGGTGCCCAGCACTCTCAGTGTTATGCAGCATGGTATGCTGCTGTCCCTGGGTTGAAAGTTTTGGCCCCTTATTCATCTGAAGATGCTCGTGGACTGCTAAAAGCTGCCATTAGGGACCCTGATCCTGTTGTTTTTCTTGAAAATGAGTTGCTATATGGTGAATCATTTCCTGTTTCTGCCGAAGTTTTTGATTCCAGTTTTTGCCTTCCAATAGGAAAAGCTAAGATCGAGAGGGAAGGAAAGGATATCACCATTACAGCTTTCTCAAAAATGGTTGGCTATGCTCTACAGGCTGCTGAGATTCTTGCTAAAGAGGGAATTAATGCTGAGGTCATAAACTTGCGGTCAATTCGTCCTCTGGACAGGGCCACCATCAACGCTTCAGTCAGGAAAACCAACAGACTTATAACAGTTGAAGAAGGATTTCCTCAGCATGGTGTTGGTGCTGAAATCTGCGCATCTGTTGTTGAGGAGAGCTTTGGTTATCTTGATGCGCCTGTTGAGAGGGTTGCTGGGGCTGATGTTCCCATGCCTTATGCAGCCAATTTGGAGAGATTGGCTGTTCCTCAGATTGAAGATATTGTTCGTGCTGCAAAGAGAGCGTGCTACAGATCTGTGCCATTGGCTGCAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endosulfine

Protein Analysis

376

Amino Acids

40.26

Weight (kDa)

5.49

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	42 - 216	4.3e-44	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	236 - 358	2.5e-43	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69510 AT1G69510 AT1G69510 AT5G64130
fragaria_vesca	FvH4_4g31111
malus_domestica	MD13G1069900.v1.1 MD16G1070200.v1.1
prunus_persica	Prupe.1G277000_v2.0.a1 Prupe.1G277000_v2.0.a1
pyrus_communis	pycom13g06270 pycom16g06110
rosa_chinensis	RchiOBHm_Chr4g0439501
rosa_laevigata	RLG00000006263
rosa_roxburghii	Rroxscaffold_5G00380420
rosa_rugosa	Rorug04G0318900 Rorug04G0319000 Rorug04G0319000 Rorug04G0319100 Rorug04G0319100 Rorug04G0319200.1 Rorug04G0319300
rosa_samantha	Rh4AG370200 Rh4BG382100 Rh4CG396700 Rh4DG376800
rosa_wichuraiana	Rw4G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	14, 899
Acc16I	TGCGCA	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	494
AccII	CGCG	1 cut(s)	86
AciI	CCGC	5 cut(s)	76, 81, 84, 174, 835
AclWI	GGATC	4 cut(s)	67, 80, 173, 608
AcuI	CTGAAG	2 cut(s)	591, 858
AfiI	CCNNNNNNNGG	3 cut(s)	163, 271, 926
AgsI	TTSAA	5 cut(s)	370, 547, 632, 908, 1067
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	5 cut(s)	32, 596, 713, 752, 969
AluI	AGCT	5 cut(s)	32, 596, 713, 752, 969
AlwI	GGATC	4 cut(s)	67, 80, 173, 608
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	262, 555, 858
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AseI	ATTAAT	1 cut(s)	813
Asp700I	GAANNNNTTC	2 cut(s)	657, 915
AspLEI	GCGC	2 cut(s)	950, 988
AspS9I	GGNCC	5 cut(s)	263, 467, 556, 607, 858
AsuHPI	GGTGA	3 cut(s)	212, 662, 733
AvaII	GGWCC	2 cut(s)	467, 607
BaeGI	GKGCMC	2 cut(s)	453, 499
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	494
BauI	CACGAG	1 cut(s)	579
BbvCI	CCTCAGC	2 cut(s)	819, 921
BccI	CCATC	2 cut(s)	190, 872
BciT130I	CCWGG	1 cut(s)	540
BfmI	CTRYAG	2 cut(s)	779, 1099
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	1103
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	2 cut(s)	467, 607
BmgT120I	GGNCC	5 cut(s)	263, 467, 556, 607, 858
BmiI	GGNNCC	6 cut(s)	37, 74, 496, 558, 608, 609
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	35
BmsI	GCATC	5 cut(s)	42, 130, 565, 959, 973
BmuI	ACTGGG	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bpu10I	CCTNAGC	2 cut(s)	819, 921
BsaJI	CCNNGG	2 cut(s)	538, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 271, 926
Bse1I	ACTGG	3 cut(s)	30, 313, 687
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	538, 539
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	163, 271, 926
BseMII	CTCAG	6 cut(s)	258, 521, 780, 810, 935, 1073
BseNI	ACTGG	3 cut(s)	30, 313, 687
BseRI	GAGGAG	1 cut(s)	977
BseSI	GKGCMC	2 cut(s)	453, 499
BseYI	CCCAGC	3 cut(s)	55, 498, 1004
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	264, 557, 860
BshNI	GGYRCC	1 cut(s)	494
BslFI	GGGAC	2 cut(s)	521, 620
BslI	CCNNNNNNNGG	3 cut(s)	163, 271, 926
BsmFI	GGGAC	2 cut(s)	521, 620
BsnI	GGCC	3 cut(s)	264, 557, 860
Bsp1286I	GDGCHC	2 cut(s)	453, 499
Bsp143I	GATC	5 cut(s)	72, 178, 613, 717, 1103
BspACI	CCGC	5 cut(s)	76, 81, 84, 174, 835
BspANI	GGCC	3 cut(s)	264, 557, 860
BspCNI	CTCAG	6 cut(s)	259, 520, 781, 811, 934, 1072
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	6 cut(s)	37, 74, 496, 558, 608, 609
BspPI	GGATC	4 cut(s)	67, 80, 173, 608
BspT107I	GGYRCC	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	30, 313, 687
BssECI	CCNNGG	2 cut(s)	538, 539
BssMI	GATC	5 cut(s)	72, 178, 613, 717, 1103
BssSI	CACGAG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	3 cut(s)	133, 476, 904
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	384, 1096
BstDEI	CTNAG	7 cut(s)	267, 507, 714, 789, 819, 921, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	950, 988
BstKTI	GATC	5 cut(s)	75, 181, 616, 720, 1106
BstMBI	GATC	5 cut(s)	72, 178, 613, 717, 1103
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 527, 782, 1091, 1124
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	2 cut(s)	779, 1099
BstSLI	GKGCMC	2 cut(s)	453, 499
BstUI	CGCG	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	72, 1103
BstYI	RGATCY	2 cut(s)	72, 1103
BsuRI	GGCC	3 cut(s)	264, 557, 860
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	138, 515
Cac8I	GCNNGC	2 cut(s)	384, 1096
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	2 cut(s)	950, 988
Cfr13I	GGNCC	5 cut(s)	263, 467, 556, 607, 858
CseI	GACGC	1 cut(s)	75
CviAII	CATG	4 cut(s)	361, 522, 926, 1021
DdeI	CTNAG	7 cut(s)	267, 507, 714, 789, 819, 921, 1059
DpnI	GATC	5 cut(s)	74, 180, 615, 719, 1105
DpnII	GATC	5 cut(s)	72, 178, 613, 717, 1103
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	2 cut(s)	65, 163
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	2 cut(s)	467, 607
Eco57I	CTGAAG	2 cut(s)	591, 858
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	739
FaeI	CATG	4 cut(s)	364, 525, 929, 1024
FaqI	GGGAC	2 cut(s)	521, 620
FatI	CATG	4 cut(s)	360, 521, 925, 1020
FauI	CCCGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	152
FspI	TGCGCA	1 cut(s)	949
GlaI	GCGC	2 cut(s)	949, 987
GsaI	CCCAGC	3 cut(s)	59, 502, 1008
HaeIII	GGCC	3 cut(s)	264, 557, 860
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	2 cut(s)	950, 988
Hin1II	CATG	4 cut(s)	364, 525, 929, 1024
Hin6I	GCGC	2 cut(s)	948, 986
HinP1I	GCGC	2 cut(s)	948, 986
HinfI	GANTC	3 cut(s)	653, 683, 793
HphI	GGTGA	3 cut(s)	212, 662, 733
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	5 cut(s)	183, 342, 464, 571, 1062
Hpy188III	TCNNGA	8 cut(s)	251, 278, 361, 629, 721, 851, 880, 980
Hpy8I	GTNNAC	1 cut(s)	584
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	376, 707, 722, 905
HpyCH4III	ACNGT	3 cut(s)	133, 476, 904
HpyCH4V	TGCA	8 cut(s)	67, 116, 382, 413, 518, 1031, 1085, 1121
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 527, 782, 1091, 1124
HpyF3I	CTNAG	7 cut(s)	267, 507, 714, 789, 819, 921, 1059
Hsp92II	CATG	4 cut(s)	364, 525, 929, 1024
HspAI	GCGC	2 cut(s)	948, 986
KflI	GGGWCCC	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	72, 178, 613, 717, 1103
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	5 cut(s)	42, 130, 565, 959, 973
MalI	GATC	5 cut(s)	74, 180, 615, 719, 1105
MboI	GATC	5 cut(s)	72, 178, 613, 717, 1103
MboII	GAAGA	5 cut(s)	102, 215, 584, 920, 1079
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	72, 1103
MhlI	GDGCHC	2 cut(s)	453, 499
MluCI	AATT	7 cut(s)	312, 387, 403, 421, 810, 840, 1036
MroXI	GAANNNNTTC	2 cut(s)	657, 915
MseI	TTAA	2 cut(s)	813, 1129
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	89, 527, 782, 1091, 1124
NdeII	GATC	5 cut(s)	72, 178, 613, 717, 1103
NlaIII	CATG	4 cut(s)	364, 525, 929, 1024
NlaIV	GGNNCC	6 cut(s)	37, 74, 496, 558, 608, 609
NsbI	TGCGCA	1 cut(s)	949
PagI	TCATGA	1 cut(s)	360
PasI	CCCWGGG	1 cut(s)	539
PdmI	GAANNNNTTC	2 cut(s)	657, 915
PfeI	GAWTC	3 cut(s)	653, 683, 793
PpuMI	RGGWCCY	1 cut(s)	607
PshBI	ATTAAT	1 cut(s)	813
PsiI	TTATAA	2 cut(s)	14, 899
Psp5II	RGGWCCY	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	3 cut(s)	55, 498, 1004
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	6 cut(s)	37, 74, 496, 558, 608, 609
PspPI	GGNCC	5 cut(s)	263, 467, 556, 607, 858
PspPPI	RGGWCCY	1 cut(s)	607
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	72, 1103
SaqAI	TTAA	2 cut(s)	813, 1129
Sau3AI	GATC	5 cut(s)	72, 178, 613, 717, 1103
Sau96I	GGNCC	5 cut(s)	263, 467, 556, 607, 858
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	453, 499
SfaNI	GCATC	5 cut(s)	42, 130, 565, 959, 973
SfcI	CTRYAG	2 cut(s)	779, 1099
SinI	GGWCC	2 cut(s)	467, 607
Sse9I	AATT	7 cut(s)	312, 387, 403, 421, 810, 840, 1036
SsiI	CCGC	5 cut(s)	76, 81, 84, 174, 835
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	3 cut(s)	133, 476, 904
TaqI	TCGA	2 cut(s)	279, 720
TasI	AATT	7 cut(s)	312, 387, 403, 421, 810, 840, 1036
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	653, 683, 793
Tru1I	TTAA	2 cut(s)	813, 1129
Tru9I	TTAA	2 cut(s)	813, 1129
TscAI	CASTG	2 cut(s)	138, 515
TspDTI	ATGAA	2 cut(s)	349, 555
TspRI	CASTG	2 cut(s)	138, 515
VpaK11BI	GGWCC	2 cut(s)	467, 607
VspI	ATTAAT	1 cut(s)	813
XagI	CCTNNNNNAGG	1 cut(s)	161
XmnI	GAANNNNTTC	2 cut(s)	657, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.