Rh4DG376800

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006518
Physical Location & Seq
Forward (+)
59435686 .. 59447188
11503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG376800.1

Sequence Viewer

Length: 594 bp
ATGGTAGAACTTCGGTTCTCATATCTCTGCTCTGCATTTCGGCTCCGGTTTTCTCAGGCGGATCTTTCACCAGCTTGTCACCTGTGCCTAGAGCAAAATATGTCGGCTACAAACACGGAGGATGTGAAGGACCAAGAGCTTGCTGATAGTGCTCTCAATAACCAAGGTCACGGTGACAGTGCCGAGCAAGACATTAAAGATTCAGATGAAAGCCGCGATGAACATCCCATGCCTTCAGTTCAGAAGGAGGAGGAAACAATTAAGAAAAAGTATGGGGGTATTATTCCTAAGAAGCCTCCACTAATATCCAAGGACCATGAGCGGGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGGGAGCACATAAGCCGAAAGGACCACTTGAAGCACTCCGCCCAAAGCTGCAGCCTACACCACACCAGCAAGTGCGTTCAAGGCGCGCCTCCTATACACGCGCAGATGATGTTGAAGTAGATGGCGTCAATAACAACACTTTGGAGGAGGAAGTCCAATCCAGCAAAACTGATGTTAGCAGCAGTAACAACACCAGCACAAACACCGCTACTGAGGATGAGAGCCGCCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

197

Amino Acids

22.03

Weight (kDa)

5.13

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 78 - 149 7.1e-24 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 322
AccII CGCG 3 cut(s) 216, 444, 459
AciI CCGC 6 cut(s) 59, 214, 322, 397, 564, 583
AclWI GGATC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 3 cut(s) 389, 438, 473
AluBI AGCT 3 cut(s) 74, 139, 406
AluI AGCT 3 cut(s) 74, 139, 406
Alw21I GWGCWC 2 cut(s) 154, 367
AlwI GGATC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 406, 409, 537
AscI GGCGCGCC 1 cut(s) 442
AspLEI GCGC 3 cut(s) 444, 446, 461
AspS9I GGNCC 3 cut(s) 130, 313, 380
AsuHPI GGTGA 3 cut(s) 60, 71, 185
AvaII GGWCC 3 cut(s) 130, 313, 380
Bbv12I GWGCWC 2 cut(s) 154, 367
BbvI GCAGC 3 cut(s) 393, 421, 549
BccI CCATC 1 cut(s) 473
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 407
BisI GCNGC 5 cut(s) 214, 407, 410, 538, 583
BlsI GCNGC 5 cut(s) 215, 408, 411, 539, 584
Bme18I GGWCC 3 cut(s) 130, 313, 380
BmgT120I GGNCC 3 cut(s) 130, 313, 380
BmiI GGNNCC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 483
BsaJI CCNNGG 2 cut(s) 163, 309
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 163, 309
BseGI GGATG 3 cut(s) 127, 223, 580
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 68, 561
BsePI GCGCGC 1 cut(s) 442
BseRI GAGGAG 2 cut(s) 263, 518
BseXI GCAGC 3 cut(s) 393, 421, 549
Bsh1236I CGCG 3 cut(s) 216, 444, 459
BsiHKAI GWGCWC 2 cut(s) 154, 367
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 154, 367
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 6 cut(s) 59, 214, 322, 397, 564, 583
BspCNI CTCAG 2 cut(s) 67, 562
BspFNI CGCG 3 cut(s) 216, 444, 459
BspLI GGNNCC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 411
BspPI GGATC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 163, 309
BssHII GCGCGC 1 cut(s) 442
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 2 cut(s) 163, 309
Bst4CI ACNGT 2 cut(s) 173, 179
BstACI GRCGYC 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 141, 324, 444
BstDEI CTNAG 3 cut(s) 54, 288, 570
BstF5I GGATG 3 cut(s) 127, 223, 580
BstFNI CGCG 3 cut(s) 216, 444, 459
BstHHI GCGC 3 cut(s) 444, 446, 461
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 149, 347, 439
BstSFI CTRYAG 1 cut(s) 407
BstUI CGCG 3 cut(s) 216, 444, 459
BstV1I GCAGC 3 cut(s) 393, 421, 549
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 3 cut(s) 127, 223, 580
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 141, 324, 444
CfoI GCGC 3 cut(s) 444, 446, 461
Cfr13I GGNCC 3 cut(s) 130, 313, 380
CseI GACGC 1 cut(s) 472
CviAII CATG 3 cut(s) 229, 317, 587
DdeI CTNAG 3 cut(s) 54, 288, 570
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EciI GGCGGA 2 cut(s) 74, 386
Eco130I CCWWGG 2 cut(s) 163, 309
Eco47I GGWCC 3 cut(s) 130, 313, 380
Eco57I CTGAAG 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 163, 309
ErhI CCWWGG 2 cut(s) 163, 309
FaeI CATG 3 cut(s) 232, 320, 590
FaiI YATR 8 cut(s) 22, 101, 230, 273, 318, 369, 453, 588
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 3 cut(s) 228, 316, 586
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 5 cut(s) 214, 407, 410, 538, 583
FokI GGATG 3 cut(s) 134, 210, 587
Fsp4HI GCNGC 5 cut(s) 214, 407, 410, 538, 583
FspBI CTAG 1 cut(s) 89
GlaI GCGC 3 cut(s) 443, 445, 460
GluI GCNGC 5 cut(s) 214, 407, 410, 538, 583
HapII CCGG 1 cut(s) 46
HgaI GACGC 1 cut(s) 472
HhaI GCGC 3 cut(s) 444, 446, 461
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 3 cut(s) 232, 320, 590
Hin6I GCGC 3 cut(s) 442, 444, 459
HinP1I GCGC 3 cut(s) 442, 444, 459
HinfI GANTC 2 cut(s) 200, 335
HpaII CCGG 1 cut(s) 46
HphI GGTGA 3 cut(s) 60, 71, 185
Hpy188I TCNGA 2 cut(s) 205, 243
HpyAV CCTTC 3 cut(s) 121, 238, 243
HpyCH4III ACNGT 2 cut(s) 173, 179
HpyCH4V TGCA 2 cut(s) 35, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 347, 439
HpyF3I CTNAG 3 cut(s) 54, 288, 570
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 3 cut(s) 232, 320, 590
HspAI GCGC 3 cut(s) 442, 444, 459
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 48, 362
LpnPI CCDG 7 cut(s) 41, 59, 84, 95, 437, 532, 565
Lsp1109I GCAGC 3 cut(s) 393, 421, 549
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 4 cut(s) 77, 167, 173, 542
MalI GATC 1 cut(s) 63
MbiI CCGCTC 1 cut(s) 322
MboI GATC 1 cut(s) 61
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 154, 367
MluCI AATT 1 cut(s) 258
MnlI CCTC 8 cut(s) 112, 241, 244, 306, 457, 496, 499, 565
MseI TTAA 2 cut(s) 195, 261
MspI CCGG 1 cut(s) 46
MvnI CGCG 3 cut(s) 216, 444, 459
MwoI GCNNNNNNNGC 3 cut(s) 149, 347, 439
NdeII GATC 1 cut(s) 61
NlaIII CATG 3 cut(s) 232, 320, 590
NlaIV GGNNCC 1 cut(s) 44
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 3 cut(s) 77, 167, 173
PalAI GGCGCGCC 1 cut(s) 442
PauI GCGCGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 200, 335
PkrI GCNGC 5 cut(s) 215, 408, 411, 539, 584
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 3 cut(s) 130, 313, 380
PstI CTGCAG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 61
PteI GCGCGC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 195, 261
SatI GCNGC 5 cut(s) 214, 407, 410, 538, 583
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 3 cut(s) 130, 313, 380
SduI GDGCHC 2 cut(s) 154, 367
SetI ASST 5 cut(s) 76, 84, 141, 169, 408
SfcI CTRYAG 1 cut(s) 407
SgsI GGCGCGCC 1 cut(s) 442
SinI GGWCC 3 cut(s) 130, 313, 380
Sse9I AATT 1 cut(s) 258
SsiI CCGC 6 cut(s) 59, 214, 322, 397, 564, 583
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 2 cut(s) 163, 309
TaaI ACNGT 2 cut(s) 173, 179
TasI AATT 1 cut(s) 258
TauI GCSGC 2 cut(s) 216, 585
TfiI GAWTC 2 cut(s) 200, 335
Tru1I TTAA 2 cut(s) 195, 261
Tru9I TTAA 2 cut(s) 195, 261
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 3 cut(s) 77, 167, 173
TseI GCWGC 3 cut(s) 406, 409, 537
Tsp45I GTSAC 3 cut(s) 77, 167, 173
TspDTI ATGAA 2 cut(s) 222, 234
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 3 cut(s) 130, 313, 380
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.