Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006518

Physical Location & Seq

Genomic Coordinates Forward (+)

4056690 .. 4057859

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06270.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCCGGTACAAACATGGATGAGGTTAAGGAGCAAGAGGTTGCTGATAGCACTCCTATGGATCTTGGTGATGGTGATGATGCCGGGGGAGACCAAAAAGCTTCAAATGAAAATCATGGAAATCCCATGCCTTCAGCCCAACAGGAGGAGGCAGCAATTAAGAAAAAGTATGGAGGCATACTACCAAAGAAGACTCCCCTAATATCCAAGGACCATGAGCGCGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGCAAGGAGCAAAGCCAAAAGGGCCACTTGAAGCACTCCGCCCAAAGCTGCAGCCCACACCACACCAGCAGGGGCGTTCAAGACGCTCAGCTTATTCTCGTGGAGGCGAAGGTGATGATGGCGGAAATATGAACATTTCCTCGGAGGATCAACTAGATAGTGGCAGCGGTAACAACACTGGCTATGAGGATCAGACCCACCACCACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endosulfine

Protein Analysis

156

Amino Acids

16.69

Weight (kDa)

5.1

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69510 AT1G69510 AT1G69510 AT5G64130
fragaria_vesca	FvH4_4g31111
malus_domestica	MD13G1069900.v1.1 MD16G1070200.v1.1
prunus_persica	Prupe.1G277000_v2.0.a1 Prupe.1G277000_v2.0.a1
pyrus_communis	pycom13g06270 pycom16g06110
rosa_chinensis	RchiOBHm_Chr4g0439501
rosa_laevigata	RLG00000006263
rosa_roxburghii	Rroxscaffold_5G00380420
rosa_rugosa	Rorug04G0318900 Rorug04G0319000 Rorug04G0319000 Rorug04G0319100 Rorug04G0319100 Rorug04G0319200.1 Rorug04G0319300
rosa_samantha	Rh4AG370200 Rh4BG382100 Rh4CG396700 Rh4DG376800
rosa_wichuraiana	Rw4G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	295, 378, 423
AclWI	GGATC	3 cut(s)	69, 411, 453
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	105, 287, 336
AluBI	AGCT	3 cut(s)	101, 304, 347
AluI	AGCT	3 cut(s)	101, 304, 347
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	3 cut(s)	69, 411, 453
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	152, 304, 307, 420
AspLEI	GCGC	2 cut(s)	222, 224
AspS9I	GGNCC	2 cut(s)	211, 278
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	3 cut(s)	80, 86, 380
AvaII	GGWCC	1 cut(s)	211
BauI	CACGAG	2 cut(s)	354, 461
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	164, 291, 319, 432
BccI	CCATC	2 cut(s)	65, 368
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	277
BisI	GCNGC	4 cut(s)	153, 305, 308, 421
BlpI	GCTNAGC	1 cut(s)	343
BlsI	GCNGC	4 cut(s)	154, 306, 309, 422
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	211, 278
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	85
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	84, 207, 396
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	439
BseDI	CCNNGG	3 cut(s)	84, 207, 396
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	439
BsePI	GCGCGC	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	164, 291, 319, 432
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	6, 84
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	61, 403, 445
Bsp1720I	GCTNAGC	1 cut(s)	343
BspACI	CCGC	3 cut(s)	295, 378, 423
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	3 cut(s)	69, 411, 453
BspTNI	GGTCTC	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	84, 207, 396
BssHII	GCGCGC	1 cut(s)	220
BssMI	GATC	3 cut(s)	61, 403, 445
BssSI	CACGAG	2 cut(s)	354, 461
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	2 cut(s)	354, 461
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	2 cut(s)	222, 224
BstKTI	GATC	3 cut(s)	64, 406, 448
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	3 cut(s)	61, 403, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 277
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	305
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	164, 291, 319, 432
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	2 cut(s)	222, 224
Cfr13I	GGNCC	2 cut(s)	211, 278
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	4 cut(s)	16, 116, 127, 215
CviJI	RGCY	8 cut(s)	101, 137, 271, 280, 304, 310, 347, 438
CviKI_1	RGCY	8 cut(s)	101, 137, 271, 280, 304, 310, 347, 438
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	3 cut(s)	63, 405, 447
DpnII	GATC	3 cut(s)	61, 403, 445
EciI	GGCGGA	2 cut(s)	284, 393
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	4 cut(s)	19, 119, 130, 218
FaiI	YATR	9 cut(s)	17, 59, 117, 128, 171, 179, 216, 386, 441
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	4 cut(s)	15, 115, 126, 214
Fnu4HI	GCNGC	4 cut(s)	153, 305, 308, 421
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	153, 305, 308, 421
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	2 cut(s)	221, 223
GluI	GCNGC	4 cut(s)	153, 305, 308, 421
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	6, 84
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	2 cut(s)	222, 224
Hin1II	CATG	4 cut(s)	19, 119, 130, 218
Hin6I	GCGC	2 cut(s)	220, 222
HinP1I	GCGC	2 cut(s)	220, 222
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	193, 233
HpaII	CCGG	2 cut(s)	6, 84
HphI	GGTGA	3 cut(s)	80, 86, 380
Hpy188I	TCNGA	2 cut(s)	400, 450
Hpy188III	TCNNGA	1 cut(s)	336
HpyAV	CCTTC	2 cut(s)	141, 359
HpyCH4V	TGCA	1 cut(s)	307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 277
HpyF3I	CTNAG	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	19, 119, 130, 218
HspAI	GCGC	2 cut(s)	220, 222
Kzo9I	GATC	3 cut(s)	61, 403, 445
LmnI	GCTCC	2 cut(s)	31, 263
LpnPI	CCDG	6 cut(s)	19, 97, 128, 311, 335, 420
Lsp1109I	GCAGC	4 cut(s)	164, 291, 319, 432
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	63, 405, 447
MboI	GATC	3 cut(s)	61, 403, 445
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	9 cut(s)	16, 31, 139, 142, 167, 353, 394, 406, 436
MseI	TTAA	2 cut(s)	27, 159
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	2 cut(s)	6, 84
MspR9I	CCNGG	1 cut(s)	85
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	245, 277
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	61, 403, 445
NlaIII	CATG	4 cut(s)	19, 119, 130, 218
PauI	GCGCGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	154, 306, 309, 422
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	211, 278
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	61
PteI	GCGCGC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	27, 159
SatI	GCNGC	4 cut(s)	153, 305, 308, 421
Sau3AI	GATC	3 cut(s)	61, 403, 445
Sau96I	GGNCC	2 cut(s)	211, 278
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	6 cut(s)	27, 42, 103, 306, 349, 370
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	3 cut(s)	295, 378, 423
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	207
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	27, 159
Tru9I	TTAA	2 cut(s)	27, 159
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	4 cut(s)	152, 304, 307, 420
TspDTI	ATGAA	2 cut(s)	123, 401
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	211
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.