Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006518

Physical Location & Seq

Genomic Coordinates Forward (+)

3898046 .. 3900224

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06110.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTTTGAGCGTAATCTCTAGGCTTGCTTCTTCTTCTTCTTCTTCTTCAGATATCCTCTGCTTCTGCAATCGGATCCGATCTTTGATCAGTTGTCGCCAGCACCCTGAGCAAAATATGTCTGGTACAAACATGGAGGAGGTTAAGGACCAAGAGGTTGCTGATAGCACTCCTATGGATCTAGGTGATGGTGACAATGCCGGGGTAGACCCAAAAGCTTCAAATGAAAATCATGGAAATCCAATGCCTTCAGCCCAGCAGGAGGAAGCAGCAATTAAGAAAAAGTATGGAGGCATACTGCCAAGGAAGACTCCCCTAATATCCAAGGACCATGAGCGTGCTTATTTTGATTCTGCTGATTGGGCACTTGGAAAGCAAGGTGCAAAGCCGAAAGGGCCGCTTGAAGCACTCCGCCCAAAGCTGCAGCCCACACCGCACCAGCAAGGGCGTTCAAGGCGCTCAGCTTATTCTTCTGGAGGCGAAGGTGATGATGGCGGAAATATGAACATTTCATCGGAGGACCAACTAGATGGTGGCAGCGGTGACAACACTGGCGATGAGGATCAGACCCGCCACCACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Endosulfine

Protein Analysis

195

Amino Acids

20.86

Weight (kDa)

5.26

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69510 AT1G69510 AT1G69510 AT5G64130
fragaria_vesca	FvH4_4g31111
malus_domestica	MD13G1069900.v1.1 MD16G1070200.v1.1
prunus_persica	Prupe.1G277000_v2.0.a1 Prupe.1G277000_v2.0.a1
pyrus_communis	pycom13g06270 pycom16g06110
rosa_chinensis	RchiOBHm_Chr4g0439501
rosa_laevigata	RLG00000006263
rosa_roxburghii	Rroxscaffold_5G00380420
rosa_rugosa	Rorug04G0318900 Rorug04G0319000 Rorug04G0319000 Rorug04G0319100 Rorug04G0319100 Rorug04G0319200.1 Rorug04G0319300
rosa_samantha	Rh4AG370200 Rh4BG382100 Rh4CG396700 Rh4DG376800
rosa_wichuraiana	Rw4G031560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	207
AciI	CCGC	6 cut(s)	398, 412, 434, 495, 540, 571
AclWI	GGATC	4 cut(s)	70, 83, 186, 570
AcuI	CTGAAG	2 cut(s)	33, 234
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	222, 404, 453
AluBI	AGCT	3 cut(s)	218, 421, 464
AluI	AGCT	3 cut(s)	218, 421, 464
AlwI	GGATC	4 cut(s)	70, 83, 186, 570
AoxI	GGCC	1 cut(s)	395
ApeKI	GCWGC	4 cut(s)	269, 421, 424, 537
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	4 cut(s)	148, 328, 395, 520
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	4 cut(s)	197, 203, 497, 554
AvaII	GGWCC	3 cut(s)	148, 328, 520
BaeGI	GKGCMC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	281, 408, 436, 549
BccI	CCATC	3 cut(s)	182, 485, 524
BclI	TGATCA	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	3 cut(s)	21, 182, 527
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	460
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	270, 398, 422, 425, 538
BlpI	GCTNAGC	1 cut(s)	460
BlsI	GCNGC	5 cut(s)	271, 399, 423, 426, 539
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	3 cut(s)	148, 328, 520
BmgT120I	GGNCC	4 cut(s)	148, 328, 395, 520
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	201, 302, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	556
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	201, 302, 324
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMII	CTCAG	2 cut(s)	99, 474
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	4 cut(s)	281, 408, 436, 549
BseYI	CCCAGC	1 cut(s)	255
BshFI	GGCC	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	262
BsnI	GGCC	1 cut(s)	397
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	5 cut(s)	75, 80, 87, 178, 562
Bsp1720I	GCTNAGC	1 cut(s)	460
BspACI	CCGC	6 cut(s)	398, 412, 434, 495, 540, 571
BspANI	GGCC	1 cut(s)	397
BspCNI	CTCAG	2 cut(s)	100, 473
BspLI	GGNNCC	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	426
BspPI	GGATC	4 cut(s)	70, 83, 186, 570
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	201, 302, 324
BssMI	GATC	5 cut(s)	75, 80, 87, 178, 562
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	302, 324
Bst2BI	CACGAG	1 cut(s)	578
BstC8I	GCNNGC	3 cut(s)	27, 101, 339
BstDEI	CTNAG	2 cut(s)	108, 460
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	5 cut(s)	78, 83, 90, 181, 565
BstMBI	GATC	5 cut(s)	75, 80, 87, 178, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 362, 394, 433, 454
BstSCI	CCNGG	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	422
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	4 cut(s)	281, 408, 436, 549
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	75, 178
BstXI	CCANNNNNNTGG	1 cut(s)	530
BstYI	RGATCY	2 cut(s)	75, 178
BsuRI	GGCC	1 cut(s)	397
BtgZI	GCGATG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	27, 101, 339
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	4 cut(s)	148, 328, 395, 520
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	3 cut(s)	133, 233, 332
CviJI	RGCY	8 cut(s)	25, 218, 254, 388, 397, 421, 427, 464
CviKI_1	RGCY	8 cut(s)	25, 218, 254, 388, 397, 421, 427, 464
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	2 cut(s)	108, 460
DpnI	GATC	5 cut(s)	77, 82, 89, 180, 564
DpnII	GATC	5 cut(s)	75, 80, 87, 178, 562
EciI	GGCGGA	2 cut(s)	401, 510
Eco130I	CCWWGG	2 cut(s)	302, 324
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	3 cut(s)	148, 328, 520
Eco57I	CTGAAG	2 cut(s)	33, 234
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	302, 324
ErhI	CCWWGG	2 cut(s)	302, 324
FaeI	CATG	3 cut(s)	136, 236, 335
FaiI	YATR	8 cut(s)	119, 134, 176, 234, 288, 296, 333, 503
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	3 cut(s)	132, 232, 331
FauI	CCCGC	1 cut(s)	578
FbaI	TGATCA	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	270, 398, 422, 425, 538
Fsp4HI	GCNGC	5 cut(s)	270, 398, 422, 425, 538
FspBI	CTAG	3 cut(s)	21, 182, 527
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	5 cut(s)	270, 398, 422, 425, 538
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	397
HapII	CCGG	1 cut(s)	201
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	136, 236, 335
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	2 cut(s)	310, 350
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	4 cut(s)	197, 203, 497, 554
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	5 cut(s)	52, 75, 80, 517, 567
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	258, 476
HpyCH4V	TGCA	3 cut(s)	69, 383, 424
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 362, 394, 433, 454
HpyF3I	CTNAG	2 cut(s)	108, 460
Hsp92II	CATG	3 cut(s)	136, 236, 335
HspAI	GCGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	5 cut(s)	75, 80, 87, 178, 562
LpnPI	CCDG	9 cut(s)	108, 113, 120, 214, 245, 269, 452, 459, 537
Lsp1109I	GCAGC	4 cut(s)	281, 408, 436, 549
MaeI	CTAG	3 cut(s)	21, 182, 527
MaeIII	GTNAC	2 cut(s)	191, 542
MalI	GATC	5 cut(s)	77, 82, 89, 180, 564
MboI	GATC	5 cut(s)	75, 80, 87, 178, 562
MboII	GAAGA	8 cut(s)	24, 27, 30, 33, 36, 39, 319, 462
MflI	RGATCY	2 cut(s)	75, 178
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	304
MnlI	CCTC	9 cut(s)	68, 130, 133, 148, 256, 284, 470, 511, 553
MseI	TTAA	2 cut(s)	144, 276
MslI	CAYNNNNRTG	2 cut(s)	173, 336
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	5 cut(s)	109, 362, 394, 433, 454
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	5 cut(s)	75, 80, 87, 178, 562
NlaIII	CATG	3 cut(s)	136, 236, 335
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	191, 542
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	271, 399, 423, 426, 539
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	4 cut(s)	148, 328, 395, 520
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	2 cut(s)	75, 178
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	2 cut(s)	173, 336
SaqAI	TTAA	2 cut(s)	144, 276
SatI	GCNGC	5 cut(s)	270, 398, 422, 425, 538
Sau3AI	GATC	5 cut(s)	75, 80, 87, 178, 562
Sau96I	GGNCC	4 cut(s)	148, 328, 395, 520
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	8 cut(s)	144, 159, 187, 220, 382, 423, 466, 487
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	3 cut(s)	148, 328, 520
SmiMI	CAYNNNNRTG	2 cut(s)	173, 336
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	6 cut(s)	398, 412, 434, 495, 540, 571
SspMI	CTAG	3 cut(s)	21, 182, 527
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	302, 324
TasI	AATT	1 cut(s)	273
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	144, 276
Tru9I	TTAA	2 cut(s)	144, 276
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	191, 542
TseI	GCWGC	4 cut(s)	269, 421, 424, 537
Tsp45I	GTSAC	2 cut(s)	191, 542
TspDTI	ATGAA	3 cut(s)	240, 501, 518
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	3 cut(s)	148, 328, 520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	3 cut(s)	21, 182, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.