Prupe.1G277000_v2.0.a1

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006518
Physical Location & Seq
Reverse (-)
28202389 .. 28205035
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G277000.2

Sequence Viewer

Length: 504 bp
ATGTCAGATACAAACACGGAGGAGGTGAAGGAGCCAGAGCTTGCTGATAGTGCTCCTAAGGATCAAGGTGCTGGTGACAATGCCGATGGTGCTCCTAAGGATCAAGGTGCTGGTGACAATGCCGAGGAAGACCTAAAAGCTTCAAATGAAAATCATGAAAATTCCATGCCTTCACCCCAGCAGGAGGAGGCAACAATTAAGAAAAAGTATGGAGGCATATTACCAAGGAAGCCTCCACTGATATCCAAGGACCATGAGCGTGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGCAAGGAGCAAAGCCAAAAGGGCCACTTGAAGCACTCCGCCCAAAGCTGCAGCCCACACCACAACAGCAAGCGCGTTCAAGGCGCTCATCTTATTCCCGTGCAGGCGACGGCGATGATGGCGGCAATGACAACACTCCTTTGGAGGACCAAGTAGACAGTGGCAGCAGTAACACGGCGGATGAGGATCAGAGTTGCCACCGCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

168

Amino Acids

17.99

Weight (kDa)

4.65

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 450
AccII CGCG 2 cut(s) 370, 498
AciI CCGC 4 cut(s) 334, 417, 473, 496
AclWI GGATC 3 cut(s) 69, 108, 489
AcsI RAATTY 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 3 cut(s) 144, 326, 375
AluBI AGCT 3 cut(s) 40, 140, 343
AluI AGCT 3 cut(s) 40, 140, 343
Alw21I GWGCWC 2 cut(s) 55, 94
AlwI GGATC 3 cut(s) 69, 108, 489
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 343, 346, 459
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 2 cut(s) 370, 381
AspS9I GGNCC 3 cut(s) 250, 317, 442
AsuHPI GGTGA 4 cut(s) 37, 86, 125, 165
AvaII GGWCC 2 cut(s) 250, 442
AxyI CCTNAGG 2 cut(s) 57, 96
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 55, 94
BbvI GCAGC 3 cut(s) 330, 358, 471
BccI CCATC 2 cut(s) 80, 407
BceAI ACGGC 2 cut(s) 421, 486
BfmI CTRYAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 316
BisI GCNGC 4 cut(s) 344, 347, 418, 460
BlsI GCNGC 4 cut(s) 345, 348, 419, 461
Bme18I GGWCC 2 cut(s) 250, 442
BmgT120I GGNCC 3 cut(s) 250, 317, 442
BmiI GGNNCC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 123, 224, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse21I CCTNAGG 2 cut(s) 57, 96
Bse3DI GCAATG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 480
BseDI CCNNGG 3 cut(s) 123, 224, 246
BseGI GGATG 1 cut(s) 481
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 427
BseRI GAGGAG 2 cut(s) 35, 200
BseXI GCAGC 3 cut(s) 330, 358, 471
BseYI CCCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 370, 498
BshFI GGCC 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 55, 94
BslI CCNNNNNNNGG 1 cut(s) 184
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 55, 94
Bsp143I GATC 3 cut(s) 61, 100, 481
BspACI CCGC 4 cut(s) 334, 417, 473, 496
BspANI GGCC 1 cut(s) 319
BspFNI CGCG 2 cut(s) 370, 498
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 33
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 3 cut(s) 69, 108, 489
BsrDI GCAATG 1 cut(s) 427
BssECI CCNNGG 3 cut(s) 123, 224, 246
BssMI GATC 3 cut(s) 61, 100, 481
BssT1I CCWWGG 2 cut(s) 224, 246
Bst4CI ACNGT 1 cut(s) 455
BstC8I GCNNGC 4 cut(s) 42, 261, 366, 400
BstDEI CTNAG 2 cut(s) 57, 96
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 2 cut(s) 370, 498
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 2 cut(s) 370, 381
BstKTI GATC 3 cut(s) 64, 103, 484
BstMBI GATC 3 cut(s) 61, 100, 481
BstMWI GCNNNNNNNGC 6 cut(s) 50, 89, 284, 316, 376, 414
BstSFI CTRYAG 1 cut(s) 344
BstUI CGCG 2 cut(s) 370, 498
BstV1I GCAGC 3 cut(s) 330, 358, 471
BstV2I GAAGAC 1 cut(s) 135
Bsu36I CCTNAGG 2 cut(s) 57, 96
BsuRI GGCC 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 236, 460
Cac8I GCNNGC 4 cut(s) 42, 261, 366, 400
CciI TCATGA 1 cut(s) 154
CfoI GCGC 2 cut(s) 370, 381
Cfr13I GGNCC 3 cut(s) 250, 317, 442
CviAII CATG 3 cut(s) 155, 166, 254
CviJI RGCY 8 cut(s) 34, 40, 140, 232, 310, 319, 343, 349
CviKI_1 RGCY 8 cut(s) 34, 40, 140, 232, 310, 319, 343, 349
DdeI CTNAG 2 cut(s) 57, 96
DpnI GATC 3 cut(s) 63, 102, 483
DpnII GATC 3 cut(s) 61, 100, 481
EciI GGCGGA 2 cut(s) 323, 488
Eco130I CCWWGG 2 cut(s) 224, 246
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 250, 442
Eco81I CCTNAGG 2 cut(s) 57, 96
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 224, 246
ErhI CCWWGG 2 cut(s) 224, 246
FaeI CATG 3 cut(s) 158, 169, 257
FaiI YATR 5 cut(s) 156, 167, 210, 218, 255
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 3 cut(s) 154, 165, 253
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 344, 347, 418, 460
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 4 cut(s) 344, 347, 418, 460
GlaI GCGC 2 cut(s) 369, 380
GluI GCNGC 4 cut(s) 344, 347, 418, 460
GsaI CCCAGC 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 1 cut(s) 319
HhaI GCGC 2 cut(s) 370, 381
Hin1II CATG 3 cut(s) 158, 169, 257
Hin6I GCGC 2 cut(s) 368, 379
HinP1I GCGC 2 cut(s) 368, 379
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 1 cut(s) 272
HphI GGTGA 4 cut(s) 37, 86, 125, 165
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 7, 486
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 22, 180
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 2 cut(s) 346, 398
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 89, 284, 316, 376, 414
HpyF3I CTNAG 2 cut(s) 57, 96
Hsp92II CATG 3 cut(s) 158, 169, 257
HspAI GCGC 2 cut(s) 368, 379
Kzo9I GATC 3 cut(s) 61, 100, 481
LmnI GCTCC 4 cut(s) 31, 58, 97, 302
LpnPI CCDG 6 cut(s) 48, 57, 96, 167, 191, 384
Lsp1109I GCAGC 3 cut(s) 330, 358, 471
MaeIII GTNAC 3 cut(s) 74, 113, 464
MalI GATC 3 cut(s) 63, 102, 483
MboI GATC 3 cut(s) 61, 100, 481
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 2 cut(s) 55, 94
MluCI AATT 2 cut(s) 160, 195
MnlI CCTC 9 cut(s) 13, 16, 118, 178, 181, 206, 243, 433, 472
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 258
MvnI CGCG 2 cut(s) 370, 498
MwoI GCNNNNNNNGC 6 cut(s) 50, 89, 284, 316, 376, 414
NdeII GATC 3 cut(s) 61, 100, 481
NlaIII CATG 3 cut(s) 158, 169, 257
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 2 cut(s) 74, 113
PagI TCATGA 1 cut(s) 154
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 4 cut(s) 345, 348, 419, 461
PspFI CCCAGC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 3 cut(s) 250, 317, 442
PstI CTGCAG 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 4 cut(s) 344, 347, 418, 460
Sau3AI GATC 3 cut(s) 61, 100, 481
Sau96I GGNCC 3 cut(s) 250, 317, 442
SduI GDGCHC 2 cut(s) 55, 94
SetI ASST 7 cut(s) 27, 42, 70, 109, 135, 142, 345
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 250, 442
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 2 cut(s) 160, 195
SsiI CCGC 4 cut(s) 334, 417, 473, 496
StyI CCWWGG 2 cut(s) 224, 246
TaaI ACNGT 1 cut(s) 455
TasI AATT 2 cut(s) 160, 195
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 2 cut(s) 243, 460
TseFI GTSAC 2 cut(s) 74, 113
TseI GCWGC 3 cut(s) 343, 346, 459
Tsp45I GTSAC 2 cut(s) 74, 113
TspDTI ATGAA 2 cut(s) 162, 171
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 2 cut(s) 243, 460
VpaK11BI GGWCC 2 cut(s) 250, 442
XapI RAATTY 1 cut(s) 160
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.