Rh4CG396700

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006518
Physical Location & Seq
Forward (+)
64610518 .. 64624687
14170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG396700.1

Sequence Viewer

Length: 639 bp
ATGGCAATCCCACCTGCTCCCACTGGCTCCATCTTTAAGCGTACTGCTGCAGCTTCGTTCTCATATCTCTGCTCTGCATTTCGGCTCCGGTTTTCTCATCAGGCGGATCTTTCATCAGCTTGTCACCTGTGCCTAGAGCAAAATATGTCGGCTACAAACACGGAGGATGTGAAGGACCAAGAGCTTGCTGATAGTGCTCTCAGTAACCAAGGTCACGGTGACAGTGCCGAGCAAGACATAAAAGCTTCAGATGAAAGCCGCGATGAACATCCCATGCCTTCAGTTCAGAAGGAGGAGGAAACAATTAAGAAAAAGTATGGGGGTATTATTCCTAGGAAGCCTCCACTAATATCCAAGGACCATGAGCGGGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGGGAGCACATAAGCCGAAGGGACCACTTGAAGCACTCCGCCCAAAGCTGCAGCCTACACCACACCAGCAAGTGCGTTCGAGGCGCGCCTCCTATACACGCGCAGATGATGTTGAAGTAGATGGCGTCAATAACAACACTTCGGAGGAGGAAGTCCAATCCAGCGAAACCGATGGTAGCAGCAGTAACAACACCAGCACAAACACCGCTACTGAGGATGAGAGCCGCCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

212

Amino Acids

23.28

Weight (kDa)

5.3

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 93 - 164 2.4e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 22
AccBSI CCGCTC 1 cut(s) 367
AccII CGCG 3 cut(s) 261, 489, 504
AciI CCGC 6 cut(s) 104, 259, 367, 442, 609, 628
AclWI GGATC 1 cut(s) 114
AcuI CTGAAG 2 cut(s) 231, 264
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 2 cut(s) 434, 518
AluBI AGCT 5 cut(s) 53, 119, 184, 245, 451
AluI AGCT 5 cut(s) 53, 119, 184, 245, 451
Alw21I GWGCWC 2 cut(s) 199, 412
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 5 cut(s) 47, 50, 451, 454, 582
AscI GGCGCGCC 1 cut(s) 487
AspA2I CCTAGG 1 cut(s) 332
AspLEI GCGC 3 cut(s) 489, 491, 506
AspS9I GGNCC 3 cut(s) 175, 358, 425
AsuHPI GGTGA 2 cut(s) 116, 230
AvaII GGWCC 3 cut(s) 175, 358, 425
AvrII CCTAGG 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 199, 412
BbvI GCAGC 5 cut(s) 34, 62, 438, 466, 594
BccI CCATC 3 cut(s) 38, 518, 569
BfaI CTAG 2 cut(s) 134, 333
BfmI CTRYAG 2 cut(s) 48, 452
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 7 cut(s) 48, 51, 259, 452, 455, 583, 628
BlnI CCTAGG 1 cut(s) 332
BlsI GCNGC 7 cut(s) 49, 52, 260, 453, 456, 584, 629
Bme18I GGWCC 3 cut(s) 175, 358, 425
BmgT120I GGNCC 3 cut(s) 175, 358, 425
BmiI GGNNCC 3 cut(s) 28, 86, 426
BsaBI GATNNNNATC 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 208, 332, 354
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 208, 332, 354
BseGI GGATG 3 cut(s) 172, 268, 625
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 214, 606
BseNI ACTGG 1 cut(s) 28
BsePI GCGCGC 1 cut(s) 487
BseRI GAGGAG 2 cut(s) 308, 563
BseXI GCAGC 5 cut(s) 34, 62, 438, 466, 594
Bsh1236I CGCG 3 cut(s) 261, 489, 504
BsiHKAI GWGCWC 2 cut(s) 199, 412
BsiSI CCGG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 199, 412
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 6 cut(s) 104, 259, 367, 442, 609, 628
BspCNI CTCAG 2 cut(s) 213, 607
BspFNI CGCG 3 cut(s) 261, 489, 504
BspLI GGNNCC 3 cut(s) 28, 86, 426
BspMAI CTGCAG 2 cut(s) 52, 456
BspMI ACCTGC 1 cut(s) 22
BspPI GGATC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 367
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 208, 332, 354
BssHII GCGCGC 1 cut(s) 487
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 3 cut(s) 208, 332, 354
Bst4CI ACNGT 2 cut(s) 218, 224
BstACI GRCGYC 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 186, 369, 489
BstDEI CTNAG 2 cut(s) 200, 615
BstF5I GGATG 3 cut(s) 172, 268, 625
BstFNI CGCG 3 cut(s) 261, 489, 504
BstHHI GCGC 3 cut(s) 489, 491, 506
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 194, 392, 484
BstSFI CTRYAG 2 cut(s) 48, 452
BstUI CGCG 3 cut(s) 261, 489, 504
BstV1I GCAGC 5 cut(s) 34, 62, 438, 466, 594
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 172, 268, 625
BtsIMutI CAGTG 2 cut(s) 21, 229
BveI ACCTGC 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 186, 369, 489
CfoI GCGC 3 cut(s) 489, 491, 506
Cfr13I GGNCC 3 cut(s) 175, 358, 425
CseI GACGC 1 cut(s) 517
Csp6I GTAC 1 cut(s) 42
CviAII CATG 3 cut(s) 274, 362, 632
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 200, 615
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EciI GGCGGA 2 cut(s) 119, 431
Eco130I CCWWGG 3 cut(s) 208, 332, 354
Eco47I GGWCC 3 cut(s) 175, 358, 425
Eco57I CTGAAG 2 cut(s) 231, 264
EcoT14I CCWWGG 3 cut(s) 208, 332, 354
ErhI CCWWGG 3 cut(s) 208, 332, 354
FaeI CATG 3 cut(s) 277, 365, 635
FaiI YATR 9 cut(s) 64, 146, 239, 275, 318, 363, 414, 498, 633
FaqI GGGAC 1 cut(s) 438
FatI CATG 3 cut(s) 273, 361, 631
FauI CCCGC 1 cut(s) 360
Fnu4HI GCNGC 7 cut(s) 48, 51, 259, 452, 455, 583, 628
FokI GGATG 3 cut(s) 179, 255, 632
Fsp4HI GCNGC 7 cut(s) 48, 51, 259, 452, 455, 583, 628
FspBI CTAG 2 cut(s) 134, 333
GlaI GCGC 3 cut(s) 488, 490, 505
GluI GCNGC 7 cut(s) 48, 51, 259, 452, 455, 583, 628
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 517
HhaI GCGC 3 cut(s) 489, 491, 506
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 3 cut(s) 277, 365, 635
Hin6I GCGC 3 cut(s) 487, 489, 504
HinP1I GCGC 3 cut(s) 487, 489, 504
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 1 cut(s) 380
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 116, 230
Hpy188I TCNGA 3 cut(s) 250, 288, 547
HpyAV CCTTC 4 cut(s) 166, 283, 288, 415
HpyCH4III ACNGT 2 cut(s) 218, 224
HpyCH4V TGCA 3 cut(s) 50, 77, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 392, 484
HpyF3I CTNAG 2 cut(s) 200, 615
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 3 cut(s) 277, 365, 635
HspAI GCGC 3 cut(s) 487, 489, 504
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 4 cut(s) 22, 32, 90, 407
LpnPI CCDG 8 cut(s) 9, 27, 86, 101, 140, 482, 577, 610
Lsp1109I GCAGC 5 cut(s) 34, 62, 438, 466, 594
MaeI CTAG 2 cut(s) 134, 333
MaeIII GTNAC 5 cut(s) 122, 203, 212, 218, 587
MalI GATC 1 cut(s) 108
MbiI CCGCTC 1 cut(s) 367
MboI GATC 1 cut(s) 106
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 2 cut(s) 199, 412
MluCI AATT 1 cut(s) 303
MnlI CCTC 9 cut(s) 157, 286, 289, 351, 477, 502, 541, 544, 610
MseI TTAA 2 cut(s) 36, 306
MspI CCGG 1 cut(s) 88
MvnI CGCG 3 cut(s) 261, 489, 504
MwoI GCNNNNNNNGC 3 cut(s) 194, 392, 484
NdeII GATC 1 cut(s) 106
NlaIII CATG 3 cut(s) 277, 365, 635
NlaIV GGNNCC 3 cut(s) 28, 86, 426
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 3 cut(s) 122, 212, 218
PalAI GGCGCGCC 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 22
PauI GCGCGC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 7 cut(s) 49, 52, 260, 453, 456, 584, 629
PspN4I GGNNCC 3 cut(s) 28, 86, 426
PspPI GGNCC 3 cut(s) 175, 358, 425
PstI CTGCAG 2 cut(s) 52, 456
PsuI RGATCY 1 cut(s) 106
PteI GCGCGC 1 cut(s) 487
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 36, 306
SatI GCNGC 7 cut(s) 48, 51, 259, 452, 455, 583, 628
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 3 cut(s) 175, 358, 425
SduI GDGCHC 2 cut(s) 199, 412
SetI ASST 8 cut(s) 16, 55, 121, 129, 186, 214, 247, 453
SfcI CTRYAG 2 cut(s) 48, 452
SgsI GGCGCGCC 1 cut(s) 487
SinI GGWCC 3 cut(s) 175, 358, 425
Sse9I AATT 1 cut(s) 303
SsiI CCGC 6 cut(s) 104, 259, 367, 442, 609, 628
SspMI CTAG 2 cut(s) 134, 333
StyI CCWWGG 3 cut(s) 208, 332, 354
TaaI ACNGT 2 cut(s) 218, 224
TaqI TCGA 1 cut(s) 482
TasI AATT 1 cut(s) 303
TauI GCSGC 2 cut(s) 261, 630
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 36, 306
Tru9I TTAA 2 cut(s) 36, 306
TscAI CASTG 2 cut(s) 28, 229
TseFI GTSAC 3 cut(s) 122, 212, 218
TseI GCWGC 5 cut(s) 47, 50, 451, 454, 582
Tsp45I GTSAC 3 cut(s) 122, 212, 218
TspDTI ATGAA 3 cut(s) 102, 267, 279
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 2 cut(s) 28, 229
VpaK11BI GGWCC 3 cut(s) 175, 358, 425
XmaJI CCTAGG 1 cut(s) 332
XspI CTAG 2 cut(s) 134, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.