RLG00000006263

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006518
Physical Location & Seq
Reverse (-)
5720322 .. 5723805
3484 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006263

Sequence Viewer

Length: 603 bp
ATGCTTGAAGTGGAAACTTCTTCGTTCTCATATCTCTGCTCTGCATTTCGGCTCCGGTTTTCTCAGGCGGATCTTTCATCAGCTTGTCACCTGTGCCTAGAGCAAAATATGTCGGCTACAAACATGGAGGATGTGAAGGACCAAGAGCTTGCTGATAGTGCTGTCAATAACCAAGGTCACGGTGACAGTGCCGAGCAAGACATAAAAGCTTCAGATGAAAGCCGCAATGAACATCCCATGCCTTCAGTTCAGAAGGAGGAGGAAACAATTAAGAAAAAGTATGGGGGTATTATTCCTAAGAAGCCTCCACTAATATCCAAGGACCATGAGCGGGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGGGAGCACATAAGCCGAAAGGACCACTTGAAGCACTCCGCCCAAAGCTGCAGCCTACACCACACCAGCAAGTGCGTTCGAGGCGCGCCTCCTATACACGCGCAGATGATGTTGAAGTAGATGGCGTCAATAACAACACTTCGGAGGAGGAAGTCCAATCCAGCGAAACCGATGGTAGCAGCAGTAACAACACCAGCACAAACACCGCTGCTGAGGATGAGAGCCGCCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

201

Amino Acids

22.14

Weight (kDa)

4.99

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 81 - 152 7.7e-24 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 331
AccII CGCG 2 cut(s) 453, 468
AciI CCGC 6 cut(s) 68, 223, 331, 406, 573, 592
AclWI GGATC 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 195, 228
AcyI GRCGYC 1 cut(s) 492
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 8, 398, 482
AluBI AGCT 4 cut(s) 83, 148, 209, 415
AluI AGCT 4 cut(s) 83, 148, 209, 415
Alw21I GWGCWC 1 cut(s) 376
AlwI GGATC 1 cut(s) 78
ApeKI GCWGC 4 cut(s) 415, 418, 546, 575
AscI GGCGCGCC 1 cut(s) 451
AspLEI GCGC 3 cut(s) 453, 455, 470
AspS9I GGNCC 3 cut(s) 139, 322, 389
AsuHPI GGTGA 2 cut(s) 80, 194
AvaII GGWCC 3 cut(s) 139, 322, 389
Bbv12I GWGCWC 1 cut(s) 376
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 4 cut(s) 402, 430, 558, 562
BccI CCATC 2 cut(s) 482, 533
BfaI CTAG 1 cut(s) 98
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 6 cut(s) 223, 416, 419, 547, 576, 592
BlsI GCNGC 6 cut(s) 224, 417, 420, 548, 577, 593
Bme18I GGWCC 3 cut(s) 139, 322, 389
BmgT120I GGNCC 3 cut(s) 139, 322, 389
BmiI GGNNCC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 172, 318
BsaWI WCCGGW 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 172, 318
BseGI GGATG 3 cut(s) 136, 232, 589
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 77, 570
BsePI GCGCGC 1 cut(s) 451
BseRI GAGGAG 2 cut(s) 272, 527
BseXI GCAGC 4 cut(s) 402, 430, 558, 562
Bsh1236I CGCG 2 cut(s) 453, 468
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 6 cut(s) 68, 223, 331, 406, 573, 592
BspCNI CTCAG 2 cut(s) 76, 571
BspFNI CGCG 2 cut(s) 453, 468
BspLI GGNNCC 1 cut(s) 53
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 172, 318
BssHII GCGCGC 1 cut(s) 451
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 172, 318
Bst4CI ACNGT 2 cut(s) 182, 188
BstACI GRCGYC 1 cut(s) 492
BstC8I GCNNGC 3 cut(s) 150, 333, 453
BstDEI CTNAG 3 cut(s) 63, 297, 579
BstF5I GGATG 3 cut(s) 136, 232, 589
BstFNI CGCG 2 cut(s) 453, 468
BstHHI GCGC 3 cut(s) 453, 455, 470
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 158, 356, 448
BstSFI CTRYAG 1 cut(s) 416
BstUI CGCG 2 cut(s) 453, 468
BstV1I GCAGC 4 cut(s) 402, 430, 558, 562
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BtsCI GGATG 3 cut(s) 136, 232, 589
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 150, 333, 453
CfoI GCGC 3 cut(s) 453, 455, 470
Cfr13I GGNCC 3 cut(s) 139, 322, 389
CseI GACGC 1 cut(s) 481
CviAII CATG 4 cut(s) 124, 238, 326, 596
DdeI CTNAG 3 cut(s) 63, 297, 579
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EciI GGCGGA 2 cut(s) 83, 395
Eco130I CCWWGG 2 cut(s) 172, 318
Eco47I GGWCC 3 cut(s) 139, 322, 389
Eco57I CTGAAG 2 cut(s) 195, 228
EcoT14I CCWWGG 2 cut(s) 172, 318
ErhI CCWWGG 2 cut(s) 172, 318
FaeI CATG 4 cut(s) 127, 241, 329, 599
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 4 cut(s) 123, 237, 325, 595
FauI CCCGC 1 cut(s) 324
Fnu4HI GCNGC 6 cut(s) 223, 416, 419, 547, 576, 592
FokI GGATG 3 cut(s) 143, 219, 596
Fsp4HI GCNGC 6 cut(s) 223, 416, 419, 547, 576, 592
FspBI CTAG 1 cut(s) 98
GlaI GCGC 3 cut(s) 452, 454, 469
GluI GCNGC 6 cut(s) 223, 416, 419, 547, 576, 592
HapII CCGG 1 cut(s) 55
HgaI GACGC 1 cut(s) 481
HhaI GCGC 3 cut(s) 453, 455, 470
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 127, 241, 329, 599
Hin6I GCGC 3 cut(s) 451, 453, 468
HinP1I GCGC 3 cut(s) 451, 453, 468
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 1 cut(s) 344
HpaII CCGG 1 cut(s) 55
HphI GGTGA 2 cut(s) 80, 194
Hpy188I TCNGA 3 cut(s) 214, 252, 511
HpyAV CCTTC 3 cut(s) 130, 247, 252
HpyCH4III ACNGT 2 cut(s) 182, 188
HpyCH4V TGCA 2 cut(s) 44, 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 356, 448
HpyF3I CTNAG 3 cut(s) 63, 297, 579
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 127, 241, 329, 599
HspAI GCGC 3 cut(s) 451, 453, 468
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 57, 371
LpnPI CCDG 6 cut(s) 50, 68, 104, 446, 541, 574
Lsp1109I GCAGC 4 cut(s) 402, 430, 558, 562
MaeI CTAG 1 cut(s) 98
MaeIII GTNAC 4 cut(s) 86, 176, 182, 551
MalI GATC 1 cut(s) 72
MbiI CCGCTC 1 cut(s) 331
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 12
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 1 cut(s) 267
MnlI CCTC 9 cut(s) 121, 250, 253, 315, 441, 466, 505, 508, 574
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 55
MvnI CGCG 2 cut(s) 453, 468
MwoI GCNNNNNNNGC 3 cut(s) 158, 356, 448
NdeII GATC 1 cut(s) 70
NlaIII CATG 4 cut(s) 127, 241, 329, 599
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 3 cut(s) 86, 176, 182
PalAI GGCGCGCC 1 cut(s) 451
PauI GCGCGC 1 cut(s) 451
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 6 cut(s) 224, 417, 420, 548, 577, 593
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 3 cut(s) 139, 322, 389
PstI CTGCAG 1 cut(s) 420
PsuI RGATCY 1 cut(s) 70
PteI GCGCGC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 6 cut(s) 223, 416, 419, 547, 576, 592
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 3 cut(s) 139, 322, 389
SduI GDGCHC 1 cut(s) 376
SetI ASST 6 cut(s) 85, 93, 150, 178, 211, 417
SfcI CTRYAG 1 cut(s) 416
SgsI GGCGCGCC 1 cut(s) 451
SinI GGWCC 3 cut(s) 139, 322, 389
Sse9I AATT 1 cut(s) 267
SsiI CCGC 6 cut(s) 68, 223, 331, 406, 573, 592
SspMI CTAG 1 cut(s) 98
StyI CCWWGG 2 cut(s) 172, 318
TaaI ACNGT 2 cut(s) 182, 188
TaqI TCGA 1 cut(s) 446
TasI AATT 1 cut(s) 267
TauI GCSGC 2 cut(s) 225, 594
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 3 cut(s) 86, 176, 182
TseI GCWGC 4 cut(s) 415, 418, 546, 575
Tsp45I GTSAC 3 cut(s) 86, 176, 182
TspDTI ATGAA 3 cut(s) 66, 231, 243
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 3 cut(s) 139, 322, 389
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.