Rh4BG382100

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006518
Physical Location & Seq
Forward (+)
53716017 .. 53723333
7317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG382100.1

Sequence Viewer

Length: 810 bp
ATGGATAGATCACCCTCTGCTTGGTTCACTACTGCTGCCAGCACAGAGCGGTCAGTTTCAAAGATGAGTCGGTTATATCCCAGTCCTTCTGCCATTTTTGTCCCCTCAAACAAAGCAAGAAACTTGGCATGGAATGGTGAAACAATAGCCTGCAATGGCCGTGTTGCCATAGCTCGGACCTGCCCCCCATGTTCTCTGAACGCCAAGCCCCGTACTGCTGCAGCTTCGTTCTCATATCTCTGCTCTGCATTTCGGCTCCGGTTTTCTCATCAGGCGGATCTTTCATCAGCTTGTCACCTGTGCCTAGAGCAAAATATGTCGGCTACAAACACGGAGGATGTGAAGGACCAAGAGCTTGCTGATAGTGCTCTCAGTAACCAAGGTCACGGTGACAGTGCCGAGCAAGACATAAAAGCTTCAGATGAAAGCCGCGATGAACATCCCATGCCTTCAGTTCAGAAGGAGGAGGAAACAATTAAGAAAAAGTATGGGGGTATTATTCCTAGGAAGCCTCCACTAATATCCAAGGACCATGAGCGGGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGGGAGCACATAAGCCGAAGGGACCACTTGAAGCACTCCGCCCAAAGCTGCAGCCTACACCACACCAGCAAGTGCGTTCGAGGCGCGCCTCCTATACACGCGCAGATGATGTTGAAGTAGATGGCGTCAATAACAACACTTCGGAGGAGGAAGTCCAATCCAGCGAAACCGATGGTAGCAGCAGTAACAACACCAGCACAAACACCGCTACTGAGGATGAGAGCCGCCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

269

Amino Acids

29.5

Weight (kDa)

5.94

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 150 - 221 3.9e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccBSI CCGCTC 2 cut(s) 49, 538
AccII CGCG 3 cut(s) 432, 660, 675
AciI CCGC 7 cut(s) 49, 275, 430, 538, 613, 780, 799
AclWI GGATC 1 cut(s) 285
AcoI YGGCCR 1 cut(s) 157
AcuI CTGAAG 2 cut(s) 402, 435
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 21, 174, 538
AgsI TTSAA 3 cut(s) 60, 605, 689
AluBI AGCT 6 cut(s) 173, 224, 290, 355, 416, 622
AluI AGCT 6 cut(s) 173, 224, 290, 355, 416, 622
Alw21I GWGCWC 2 cut(s) 370, 583
AlwI GGATC 1 cut(s) 285
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 6 cut(s) 35, 218, 221, 622, 625, 753
AscI GGCGCGCC 1 cut(s) 658
AspA2I CCTAGG 1 cut(s) 503
AspLEI GCGC 3 cut(s) 660, 662, 677
AspS9I GGNCC 4 cut(s) 177, 346, 529, 596
AsuHPI GGTGA 4 cut(s) 3, 149, 287, 401
AvaII GGWCC 4 cut(s) 177, 346, 529, 596
AvrII CCTAGG 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 370, 583
BbvI GCAGC 6 cut(s) 22, 205, 233, 609, 637, 765
BccI CCATC 2 cut(s) 689, 740
BceAI ACGGC 1 cut(s) 144
BfaI CTAG 2 cut(s) 305, 504
BfmI CTRYAG 2 cut(s) 219, 623
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 8 cut(s) 36, 219, 222, 430, 623, 626, 754, 799
BlnI CCTAGG 1 cut(s) 503
BlsI GCNGC 8 cut(s) 37, 220, 223, 431, 624, 627, 755, 800
Bme18I GGWCC 4 cut(s) 177, 346, 529, 596
BmgT120I GGNCC 4 cut(s) 177, 346, 529, 596
BmiI GGNNCC 2 cut(s) 257, 597
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 3 cut(s) 379, 503, 525
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 174, 538
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 160
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 379, 503, 525
BseGI GGATG 3 cut(s) 343, 439, 796
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 3 cut(s) 21, 174, 538
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 385, 777
BseNI ACTGG 1 cut(s) 81
BsePI GCGCGC 1 cut(s) 658
BseRI GAGGAG 2 cut(s) 479, 734
BseXI GCAGC 6 cut(s) 22, 205, 233, 609, 637, 765
Bsh1236I CGCG 3 cut(s) 432, 660, 675
BshFI GGCC 1 cut(s) 159
BsiHKAI GWGCWC 2 cut(s) 370, 583
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 86, 609
BslI CCNNNNNNNGG 3 cut(s) 21, 174, 538
BsmFI GGGAC 2 cut(s) 86, 609
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 370, 583
Bsp143I GATC 2 cut(s) 8, 277
BspACI CCGC 7 cut(s) 49, 275, 430, 538, 613, 780, 799
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 2 cut(s) 384, 778
BspFNI CGCG 3 cut(s) 432, 660, 675
BspLI GGNNCC 2 cut(s) 257, 597
BspMAI CTGCAG 2 cut(s) 223, 627
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 1 cut(s) 285
BsrBI CCGCTC 2 cut(s) 49, 538
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 379, 503, 525
BssHII GCGCGC 1 cut(s) 658
BssMI GATC 2 cut(s) 8, 277
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 3 cut(s) 379, 503, 525
Bst4CI ACNGT 2 cut(s) 389, 395
BstACI GRCGYC 1 cut(s) 699
BstC8I GCNNGC 5 cut(s) 40, 151, 357, 540, 660
BstDEI CTNAG 2 cut(s) 371, 786
BstF5I GGATG 3 cut(s) 343, 439, 796
BstFNI CGCG 3 cut(s) 432, 660, 675
BstHHI GCGC 3 cut(s) 660, 662, 677
BstKTI GATC 2 cut(s) 11, 280
BstMBI GATC 2 cut(s) 8, 277
BstMWI GCNNNNNNNGC 3 cut(s) 365, 563, 655
BstSFI CTRYAG 2 cut(s) 219, 623
BstUI CGCG 3 cut(s) 432, 660, 675
BstV1I GCAGC 6 cut(s) 22, 205, 233, 609, 637, 765
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 3 cut(s) 343, 439, 796
BtsIMutI CAGTG 1 cut(s) 400
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 5 cut(s) 40, 151, 357, 540, 660
CfoI GCGC 3 cut(s) 660, 662, 677
Cfr13I GGNCC 4 cut(s) 177, 346, 529, 596
CseI GACGC 1 cut(s) 688
Csp6I GTAC 1 cut(s) 213
CviAII CATG 5 cut(s) 129, 189, 445, 533, 803
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 371, 786
DpnI GATC 2 cut(s) 10, 279
DpnII GATC 2 cut(s) 8, 277
EaeI YGGCCR 1 cut(s) 157
EciI GGCGGA 2 cut(s) 290, 602
Eco130I CCWWGG 3 cut(s) 379, 503, 525
Eco47I GGWCC 4 cut(s) 177, 346, 529, 596
Eco57I CTGAAG 2 cut(s) 402, 435
EcoT14I CCWWGG 3 cut(s) 379, 503, 525
ErhI CCWWGG 3 cut(s) 379, 503, 525
FaeI CATG 5 cut(s) 132, 192, 448, 536, 806
FaqI GGGAC 2 cut(s) 86, 609
FatI CATG 5 cut(s) 128, 188, 444, 532, 802
FauI CCCGC 1 cut(s) 531
Fnu4HI GCNGC 8 cut(s) 36, 219, 222, 430, 623, 626, 754, 799
FokI GGATG 3 cut(s) 350, 426, 803
Fsp4HI GCNGC 8 cut(s) 36, 219, 222, 430, 623, 626, 754, 799
FspBI CTAG 2 cut(s) 305, 504
GlaI GCGC 3 cut(s) 659, 661, 676
GluI GCNGC 8 cut(s) 36, 219, 222, 430, 623, 626, 754, 799
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 259
HgaI GACGC 1 cut(s) 688
HhaI GCGC 3 cut(s) 660, 662, 677
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 5 cut(s) 132, 192, 448, 536, 806
Hin6I GCGC 3 cut(s) 658, 660, 675
HinP1I GCGC 3 cut(s) 658, 660, 675
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 2 cut(s) 67, 551
HpaII CCGG 1 cut(s) 259
HphI GGTGA 4 cut(s) 3, 149, 287, 401
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 5 cut(s) 177, 198, 421, 459, 718
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 5 cut(s) 96, 337, 454, 459, 586
HpyCH4III ACNGT 2 cut(s) 389, 395
HpyCH4V TGCA 4 cut(s) 153, 221, 248, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 563, 655
HpyF3I CTNAG 2 cut(s) 371, 786
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 5 cut(s) 132, 192, 448, 536, 806
HspAI GCGC 3 cut(s) 658, 660, 675
Kzo9I GATC 2 cut(s) 8, 277
LmnI GCTCC 2 cut(s) 261, 578
Lsp1109I GCAGC 6 cut(s) 22, 205, 233, 609, 637, 765
MaeI CTAG 2 cut(s) 305, 504
MaeIII GTNAC 5 cut(s) 293, 374, 383, 389, 758
MalI GATC 2 cut(s) 10, 279
MbiI CCGCTC 2 cut(s) 49, 538
MboI GATC 2 cut(s) 8, 277
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 370, 583
MluCI AATT 1 cut(s) 474
MlyI GAGTC 1 cut(s) 76
MseI TTAA 1 cut(s) 477
MspI CCGG 1 cut(s) 259
MvnI CGCG 3 cut(s) 432, 660, 675
MwoI GCNNNNNNNGC 3 cut(s) 365, 563, 655
NdeII GATC 2 cut(s) 8, 277
NlaIII CATG 5 cut(s) 132, 192, 448, 536, 806
NlaIV GGNNCC 2 cut(s) 257, 597
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 3 cut(s) 293, 383, 389
PalAI GGCGCGCC 1 cut(s) 658
PauI GCGCGC 1 cut(s) 658
PfeI GAWTC 1 cut(s) 551
PkrI GCNGC 8 cut(s) 37, 220, 223, 431, 624, 627, 755, 800
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 257, 597
PspPI GGNCC 4 cut(s) 177, 346, 529, 596
PstI CTGCAG 2 cut(s) 223, 627
PsuI RGATCY 1 cut(s) 277
PteI GCGCGC 1 cut(s) 658
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 8 cut(s) 36, 219, 222, 430, 623, 626, 754, 799
Sau3AI GATC 2 cut(s) 8, 277
Sau96I GGNCC 4 cut(s) 177, 346, 529, 596
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 2 cut(s) 370, 583
SetI ASST 9 cut(s) 175, 182, 226, 292, 300, 357, 385, 418, 624
SfcI CTRYAG 2 cut(s) 219, 623
SgsI GGCGCGCC 1 cut(s) 658
SinI GGWCC 4 cut(s) 177, 346, 529, 596
Sse9I AATT 1 cut(s) 474
SsiI CCGC 7 cut(s) 49, 275, 430, 538, 613, 780, 799
SspMI CTAG 2 cut(s) 305, 504
StyI CCWWGG 3 cut(s) 379, 503, 525
TaaI ACNGT 2 cut(s) 389, 395
TaqI TCGA 1 cut(s) 653
TasI AATT 1 cut(s) 474
TauI GCSGC 2 cut(s) 432, 801
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 3 cut(s) 293, 383, 389
TseI GCWGC 6 cut(s) 35, 218, 221, 622, 625, 753
Tsp45I GTSAC 3 cut(s) 293, 383, 389
TspDTI ATGAA 3 cut(s) 273, 438, 450
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 4 cut(s) 177, 346, 529, 596
XmaJI CCTAGG 1 cut(s) 503
XspI CTAG 2 cut(s) 305, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.