RchiOBHm_Chr4g0439501

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006518
Physical Location & Seq
Forward (+)
61921741 .. 61924339
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40755

Sequence Viewer

Length: 495 bp
ATGTCGGCTACAAACACGGAGGATGTGAAGGACCAGGAGCTTGCTGATAGTGCTCTCAATAACCAAGGTCACGGTGACAGTGCCGAGCAAGACATAAAAGCTTCAGATGAAAGCCGCGATGAACATCCCATGCCTTCAGTTCAGAAGGAGGAGGAAACAATTAAGAAAAAGTATGGGGGTATTATTCCTAAGAAGCCTCCACTAATATCCAAGGACCATGAGCGGGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGGGAGCACATAAGCCGAAAGGACCACTTGAAGCACTCCGCCCAAAGCTGCAGCCTACACCACACCAGCAAGTGCGTTCAAGGCGCGCCTCCTATACACGCGCAGATGATGTTGAAGTAGATGGCGTCAATAACAACACTTTGGAGGAGGAAGTCCAATCCAGCAAAACTGATGTTAGCAGCAGTAACAACACCAGCACAAACACCGCTACTGAGGATGAGAGCCGCCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

164

Amino Acids

18.15

Weight (kDa)

5.09

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 45 - 116 4.7e-24 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 3 cut(s) 117, 345, 360
AciI CCGC 5 cut(s) 115, 223, 298, 465, 484
AcuI CTGAAG 2 cut(s) 87, 120
AcyI GRCGYC 1 cut(s) 384
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 290, 339, 374
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 3 cut(s) 40, 101, 307
AluI AGCT 3 cut(s) 40, 101, 307
Alw21I GWGCWC 2 cut(s) 55, 268
ApeKI GCWGC 3 cut(s) 307, 310, 438
AscI GGCGCGCC 1 cut(s) 343
AspLEI GCGC 3 cut(s) 345, 347, 362
AspS9I GGNCC 3 cut(s) 31, 214, 281
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 3 cut(s) 31, 214, 281
Bbv12I GWGCWC 2 cut(s) 55, 268
BbvI GCAGC 3 cut(s) 294, 322, 450
BccI CCATC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 308
BisI GCNGC 5 cut(s) 115, 308, 311, 439, 484
BlsI GCNGC 5 cut(s) 116, 309, 312, 440, 485
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 3 cut(s) 31, 214, 281
BmgT120I GGNCC 3 cut(s) 31, 214, 281
BmrFI CCNGG 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 2 cut(s) 64, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 64, 210
BseGI GGATG 3 cut(s) 28, 124, 481
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 462
BsePI GCGCGC 1 cut(s) 343
BseRI GAGGAG 2 cut(s) 164, 419
BseXI GCAGC 3 cut(s) 294, 322, 450
Bsh1236I CGCG 3 cut(s) 117, 345, 360
BsiHKAI GWGCWC 2 cut(s) 55, 268
BslI CCNNNNNNNGG 1 cut(s) 223
Bsp1286I GDGCHC 2 cut(s) 55, 268
BspACI CCGC 5 cut(s) 115, 223, 298, 465, 484
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 3 cut(s) 117, 345, 360
BspMAI CTGCAG 1 cut(s) 312
BsrBI CCGCTC 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 64, 210
BssHII GCGCGC 1 cut(s) 343
BssNI GRCGYC 1 cut(s) 384
BssT1I CCWWGG 2 cut(s) 64, 210
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 74, 80
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 3 cut(s) 42, 225, 345
BstDEI CTNAG 2 cut(s) 189, 471
BstF5I GGATG 3 cut(s) 28, 124, 481
BstFNI CGCG 3 cut(s) 117, 345, 360
BstHHI GCGC 3 cut(s) 345, 347, 362
BstMWI GCNNNNNNNGC 3 cut(s) 50, 248, 340
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 3 cut(s) 117, 345, 360
BstV1I GCAGC 3 cut(s) 294, 322, 450
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 3 cut(s) 28, 124, 481
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 42, 225, 345
CfoI GCGC 3 cut(s) 345, 347, 362
Cfr13I GGNCC 3 cut(s) 31, 214, 281
CseI GACGC 1 cut(s) 373
CviAII CATG 3 cut(s) 130, 218, 488
DdeI CTNAG 2 cut(s) 189, 471
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 64, 210
Eco47I GGWCC 3 cut(s) 31, 214, 281
Eco57I CTGAAG 2 cut(s) 87, 120
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 64, 210
ErhI CCWWGG 2 cut(s) 64, 210
FaeI CATG 3 cut(s) 133, 221, 491
FaiI YATR 7 cut(s) 95, 131, 174, 219, 270, 354, 489
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 3 cut(s) 129, 217, 487
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 5 cut(s) 115, 308, 311, 439, 484
FokI GGATG 3 cut(s) 35, 111, 488
Fsp4HI GCNGC 5 cut(s) 115, 308, 311, 439, 484
GlaI GCGC 3 cut(s) 344, 346, 361
GluI GCNGC 5 cut(s) 115, 308, 311, 439, 484
HgaI GACGC 1 cut(s) 373
HhaI GCGC 3 cut(s) 345, 347, 362
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 3 cut(s) 133, 221, 491
Hin6I GCGC 3 cut(s) 343, 345, 360
HinP1I GCGC 3 cut(s) 343, 345, 360
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 106, 144
HpyAV CCTTC 3 cut(s) 22, 139, 144
HpyCH4III ACNGT 2 cut(s) 74, 80
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 248, 340
HpyF3I CTNAG 2 cut(s) 189, 471
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 3 cut(s) 133, 221, 491
HspAI GCGC 3 cut(s) 343, 345, 360
LmnI GCTCC 2 cut(s) 37, 263
LpnPI CCDG 5 cut(s) 20, 47, 338, 433, 466
Lsp1109I GCAGC 3 cut(s) 294, 322, 450
MaeIII GTNAC 3 cut(s) 68, 74, 443
MbiI CCGCTC 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 55, 268
MluCI AATT 1 cut(s) 159
MnlI CCTC 8 cut(s) 13, 142, 145, 207, 358, 397, 400, 466
MseI TTAA 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 3 cut(s) 117, 345, 360
MwoI GCNNNNNNNGC 3 cut(s) 50, 248, 340
NlaIII CATG 3 cut(s) 133, 221, 491
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 68, 74
PalAI GGCGCGCC 1 cut(s) 343
PauI GCGCGC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 5 cut(s) 116, 309, 312, 440, 485
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspPI GGNCC 3 cut(s) 31, 214, 281
PstI CTGCAG 1 cut(s) 312
PteI GCGCGC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 5 cut(s) 115, 308, 311, 439, 484
Sau96I GGNCC 3 cut(s) 31, 214, 281
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 2 cut(s) 55, 268
SetI ASST 4 cut(s) 42, 70, 103, 309
SfcI CTRYAG 1 cut(s) 308
SgsI GGCGCGCC 1 cut(s) 343
SinI GGWCC 3 cut(s) 31, 214, 281
Sse9I AATT 1 cut(s) 159
SsiI CCGC 5 cut(s) 115, 223, 298, 465, 484
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 64, 210
TaaI ACNGT 2 cut(s) 74, 80
TasI AATT 1 cut(s) 159
TauI GCSGC 2 cut(s) 117, 486
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 2 cut(s) 68, 74
TseI GCWGC 3 cut(s) 307, 310, 438
Tsp45I GTSAC 2 cut(s) 68, 74
TspDTI ATGAA 2 cut(s) 123, 135
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 85
VpaK11BI GGWCC 3 cut(s) 31, 214, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.