Rorug02G0289200

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010750
Physical Location & Seq
Forward (+)
31615884 .. 31640286
24403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0289200.1

Sequence Viewer

Length: 1281 bp
ATGTTGATGGACCTGCCCTCGGATATCCTCGTCAAGATCCTTTCGAGATTGCCATCCGAATCAATCTGTCGCATTCGATGCGTGTCTAAGGCCTTGTTAAACATGGTTGATGACCCCTCTTTTGTTAAACTGCATATGGGCTACACCGACGAGGTACCTCTTCTCATGTCTTTTGCTGAACCTTTTGTTTCTGAGACCAGTGCAGTTATAGCATCCTTGCAATCAGTCACATACGATGGCAGTGGCAGTGGCAGTGCCTTGACAGCAAGAGGTCAATATGCATTTCAAGTCTCCACAACATACCAGCGAGATATTCCACCTTACTTCATAGATTGTGTTTTCCGCAACTTGTTTTGCTTTCGAAATAAATGTGATTATGGAGTTTGTTTTTTGATCAATCCTCTGAGAGGACAAGTTCTAAGGCTTCCTAGGAATCATATTTCCAAAATTGCAGTGTCCCAAGTATTCAATGACTGGTATGGTATGGGATTTGATAGTATAACTAACACCCTCAAGATTCTTGCTGTCACCCAATTTGGCCAATCTGGTAAGCCTTCCTGCCGGGCAGCCCAGGTTCTTGTATTGGGCACAAGCTCATGGCGAGATGTAACTCCTCCTCCTTGTCGATTGTCTGGTAACAGTAGTAAAAGTGCATCTGCAAATGGAGACATGCATTGGTTGATTTATGGTAATTTCAGTGAAAAAGAAATTTATGGAAGATGCCATATAATTTCTTTCGATTTTAAGAAAGAAAAGTTCTATTGGACTCCTCACCCCGCGGCACAAAGCTCAAACCATTACTGGCGTTTGTATTTGCTTACTTTCAGAGGATCTCTGGCCATCGTGGATACTTCTTCATCACAAGGTATGATTACGAAGATTGATATATGGGTATTGAAAGATTATGACAAAAAAGAGTGGGCAAGAGATTACAGCATAGGCATCAAAAATTTTGACTTGGTTAGGCAGTTTGGATTGTTGATAAAGGTTACTTGTGGCCAATGGGAGCATGGCATATATTTCAAAATTTTTGACAAAATCCGTACGTTCTTTTTGGATCTAAGATGTTATTCCATGAATACCGTAACATGTGGTAGTGGGGATCGTACCAAAATTTTGAGTTATACTGGGAGCTTGATATCCTTAAAAGATTATGAGAATTCTGTTGGAGCTGAAAACAGTACTGAAAGCCTAAAAAGTTATGGCAATTTGATCGAAGAAGAAGCACAAGGCTTTAGTTTATCTAAGAGGCATGTGCTGCGAGGAGTTTCAGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

426

Amino Acids

48.09

Weight (kDa)

8.79

Isoelectric Point (pI)

30.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 42 6.3e-09 F-box domain
F-box-like PF12937 4 - 40 1.2e-07 F-box-like
FBA_3 PF08268 99 - 331 8e-24 F-box associated beta propeller domain
FBA_1 PF07734 117 - 309 7.1e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 779
AciI CCGC 3 cut(s) 343, 777, 779
AclWI GGATC 4 cut(s) 31, 838, 1065, 1110
AcoI YGGCCR 3 cut(s) 538, 837, 997
AcsI RAATTY 5 cut(s) 708, 949, 1026, 1113, 1159
AfaI GTAC 4 cut(s) 156, 1045, 1108, 1183
AfiI CCNNNNNNNGG 2 cut(s) 19, 407
AflIII ACRYGT 1 cut(s) 1088
AgsI TTSAA 4 cut(s) 287, 469, 898, 1024
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 4 cut(s) 594, 789, 1134, 1172
AluI AGCT 4 cut(s) 594, 789, 1134, 1172
Alw26I GTCTC 3 cut(s) 188, 295, 660
AlwI GGATC 4 cut(s) 31, 838, 1065, 1110
AoxI GGCC 4 cut(s) 90, 538, 837, 997
ApeKI GCWGC 2 cut(s) 566, 1258
ApoI RAATTY 5 cut(s) 708, 949, 1026, 1113, 1159
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
Asp718I GGTACC 1 cut(s) 154
AspA2I CCTAGG 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 520, 764
AsuII TTCGAA 1 cut(s) 361
AvaII GGWCC 1 cut(s) 10
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 590
BalI TGGCCA 3 cut(s) 540, 839, 999
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 578, 1245
BccI CCATC 3 cut(s) 61, 230, 848
BcgI CGANNNNNNTGC 2 cut(s) 1195, 1229
BciT130I CCWGG 1 cut(s) 572
BciVI GTATCC 1 cut(s) 841
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 3 cut(s) 188, 295, 660
BfaI CTAG 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 21
BfuI GTATCC 1 cut(s) 841
BisI GCNGC 3 cut(s) 567, 780, 1259
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 568, 781, 1260
BmcAI AGTACT 1 cut(s) 1183
Bme1390I CCNGG 2 cut(s) 563, 572
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 563, 572
BmrI ACTGGG 1 cut(s) 1137
BmsI GCATC 5 cut(s) 68, 221, 662, 710, 951
BmuI ACTGGG 1 cut(s) 1137
Bpu14I TTCGAA 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 18, 428, 570, 777
BsaXI ACNNNNNCTCC 3 cut(s) 601, 631, 1257
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 407
Bse1I ACTGG 4 cut(s) 198, 479, 806, 1132
Bse8I GATNNNNATC 1 cut(s) 52
BseBI CCWGG 1 cut(s) 572
BseDI CCNNGG 4 cut(s) 18, 428, 570, 777
BseGI GGATG 2 cut(s) 53, 212
BseJI GATNNNNATC 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 19, 407
BseMII CTCAG 2 cut(s) 183, 395
BseNI ACTGG 4 cut(s) 198, 479, 806, 1132
BseRI GAGGAG 4 cut(s) 603, 606, 759, 1278
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 2 cut(s) 578, 1245
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 4 cut(s) 92, 540, 839, 999
BshNI GGYRCC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 562
BsiWI CGTACG 1 cut(s) 1043
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 2 cut(s) 19, 407
BsmAI GTCTC 3 cut(s) 188, 295, 660
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 4 cut(s) 92, 540, 839, 999
Bso31I GGTCTC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 590
Bsp143I GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
BspACI CCGC 3 cut(s) 343, 777, 779
BspANI GGCC 4 cut(s) 92, 540, 839, 999
BspCNI CTCAG 2 cut(s) 184, 396
BspFNI CGCG 1 cut(s) 779
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 21
BspPI GGATC 4 cut(s) 31, 838, 1065, 1110
BspT104I TTCGAA 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 4 cut(s) 198, 479, 806, 1132
BssECI CCNNGG 4 cut(s) 18, 428, 570, 777
BssMI GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 3 cut(s) 641, 1084, 1181
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 2 cut(s) 78, 1258
BstBI TTCGAA 1 cut(s) 361
BstDEI CTNAG 6 cut(s) 87, 192, 404, 419, 1061, 1245
BstDSI CCRYGG 1 cut(s) 777
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 53, 212
BstFNI CGCG 1 cut(s) 779
BstKTI GATC 6 cut(s) 39, 396, 833, 1060, 1105, 1215
BstMAI GTCTC 3 cut(s) 188, 295, 660
BstMBI GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
BstMWI GCNNNNNNNGC 4 cut(s) 78, 209, 263, 1258
BstNI CCWGG 1 cut(s) 572
BstNSI RCATGY 3 cut(s) 673, 1092, 1256
BstSCI CCNGG 2 cut(s) 561, 570
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 2 cut(s) 578, 1245
BstX2I RGATCY 3 cut(s) 36, 830, 1057
BstYI RGATCY 3 cut(s) 36, 830, 1057
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 4 cut(s) 92, 540, 839, 999
BtgI CCRYGG 1 cut(s) 777
BtsCI GGATG 2 cut(s) 53, 212
BtsI GCAGTG 4 cut(s) 247, 253, 259, 459
BtsIMutI CAGTG 6 cut(s) 205, 247, 253, 259, 459, 703
BveI ACCTGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 780
Csp6I GTAC 4 cut(s) 155, 1044, 1107, 1182
CviAII CATG 8 cut(s) 103, 166, 597, 670, 1010, 1075, 1089, 1253
CviQI GTAC 4 cut(s) 155, 1044, 1107, 1182
DdeI CTNAG 6 cut(s) 87, 192, 404, 419, 1061, 1245
DpnI GATC 6 cut(s) 38, 395, 832, 1059, 1104, 1214
DpnII GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
EaeI YGGCCR 3 cut(s) 538, 837, 997
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 428
Eco147I AGGCCT 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 188
Eco32I GATATC 2 cut(s) 25, 1140
Eco47I GGWCC 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 1159
EcoRII CCWGG 1 cut(s) 570
EcoRV GATATC 2 cut(s) 25, 1140
EcoT14I CCWWGG 1 cut(s) 428
EcoT22I ATGCAT 2 cut(s) 283, 675
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 8 cut(s) 106, 169, 600, 673, 1013, 1078, 1092, 1256
FaqI GGGAC 1 cut(s) 442
FatI CATG 8 cut(s) 102, 165, 596, 669, 1009, 1074, 1088, 1252
FauI CCCGC 1 cut(s) 784
FauNDI CATATG 1 cut(s) 135
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 567, 780, 1259
FokI GGATG 2 cut(s) 40, 199
Fsp4HI GCNGC 3 cut(s) 567, 780, 1259
FspBI CTAG 1 cut(s) 429
GluI GCNGC 3 cut(s) 567, 780, 1259
HaeIII GGCC 4 cut(s) 92, 540, 839, 999
HapII CCGG 1 cut(s) 562
Hin1II CATG 8 cut(s) 106, 169, 600, 673, 1013, 1078, 1092, 1256
HinfI GANTC 4 cut(s) 59, 433, 517, 766
HpaII CCGG 1 cut(s) 562
HphI GGTGA 2 cut(s) 520, 764
Hpy188I TCNGA 6 cut(s) 22, 58, 193, 405, 827, 1280
Hpy188III TCNNGA 3 cut(s) 34, 45, 514
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 564
HpyCH4III ACNGT 3 cut(s) 641, 1084, 1181
HpyCH4IV ACGT 1 cut(s) 1046
HpyCH4V TGCA 8 cut(s) 133, 203, 220, 281, 452, 653, 659, 673
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 209, 263, 1258
HpyF3I CTNAG 6 cut(s) 87, 192, 404, 419, 1061, 1245
HpySE526I ACGT 1 cut(s) 1046
Hsp92II CATG 8 cut(s) 106, 169, 600, 673, 1013, 1078, 1092, 1256
KpnI GGTACC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 393
KspI CCGCGG 1 cut(s) 780
Kzo9I GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
LmnI GCTCC 3 cut(s) 1006, 1131, 1169
Lsp1109I GCAGC 2 cut(s) 578, 1245
LweI GCATC 5 cut(s) 68, 221, 662, 710, 951
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 1046
MaeIII GTNAC 6 cut(s) 226, 526, 607, 635, 988, 1084
MalI GATC 6 cut(s) 38, 395, 832, 1059, 1104, 1214
MboI GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
MboII GAAGA 6 cut(s) 152, 729, 846, 889, 1229, 1232
MflI RGATCY 3 cut(s) 36, 830, 1057
MhlI GDGCHC 1 cut(s) 590
MlsI TGGCCA 3 cut(s) 540, 839, 999
MluNI TGGCCA 3 cut(s) 540, 839, 999
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 1 cut(s) 1147
Mox20I TGGCCA 3 cut(s) 540, 839, 999
Mph1103I ATGCAT 2 cut(s) 283, 675
MscI TGGCCA 3 cut(s) 540, 839, 999
MseI TTAA 4 cut(s) 98, 126, 744, 1145
Msp20I TGGCCA 3 cut(s) 540, 839, 999
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 2 cut(s) 563, 572
Mva1269I GAATGC 1 cut(s) 72
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 4 cut(s) 78, 209, 263, 1258
NciI CCSGG 1 cut(s) 563
NdeI CATATG 1 cut(s) 135
NdeII GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
NlaIII CATG 8 cut(s) 106, 169, 600, 673, 1013, 1078, 1092, 1256
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 226, 526
NsiI ATGCAT 2 cut(s) 283, 675
NspI RCATGY 3 cut(s) 673, 1092, 1256
NspV TTCGAA 1 cut(s) 361
PceI AGGCCT 1 cut(s) 92
PciI ACATGT 1 cut(s) 1088
PctI GAATGC 1 cut(s) 72
PfeI GAWTC 3 cut(s) 59, 433, 517
Pfl23II CGTACG 1 cut(s) 1043
PkrI GCNGC 3 cut(s) 568, 781, 1260
PleI GAGTC 1 cut(s) 760
PpsI GAGTC 1 cut(s) 760
PscI ACATGT 1 cut(s) 1088
Psp6I CCWGG 1 cut(s) 570
PspGI CCWGG 1 cut(s) 570
PspLI CGTACG 1 cut(s) 1043
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 3 cut(s) 36, 830, 1057
RsaI GTAC 4 cut(s) 156, 1045, 1108, 1183
RsaNI GTAC 4 cut(s) 155, 1044, 1107, 1182
SacII CCGCGG 1 cut(s) 780
SaqAI TTAA 4 cut(s) 98, 126, 744, 1145
SatI GCNGC 3 cut(s) 567, 780, 1259
Sau3AI GATC 6 cut(s) 36, 393, 830, 1057, 1102, 1212
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 1183
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 2 cut(s) 563, 572
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 5 cut(s) 68, 221, 662, 710, 951
Sfr303I CCGCGG 1 cut(s) 780
SfuI TTCGAA 1 cut(s) 361
SgrBI CCGCGG 1 cut(s) 780
SinI GGWCC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 3 cut(s) 343, 777, 779
SspMI CTAG 1 cut(s) 429
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 561, 570
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 3 cut(s) 641, 1084, 1181
TaiI ACGT 1 cut(s) 1049
TaqI TCGA 6 cut(s) 44, 76, 361, 625, 738, 1215
TatI WGTACW 1 cut(s) 1181
TauI GCSGC 1 cut(s) 782
TfiI GAWTC 3 cut(s) 59, 433, 517
Tru1I TTAA 4 cut(s) 98, 126, 744, 1145
Tru9I TTAA 4 cut(s) 98, 126, 744, 1145
TscAI CASTG 6 cut(s) 205, 247, 253, 259, 459, 703
TseFI GTSAC 2 cut(s) 226, 526
TseI GCWGC 2 cut(s) 566, 1258
Tsp45I GTSAC 2 cut(s) 226, 526
TspDTI ATGAA 3 cut(s) 316, 846, 1091
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 6 cut(s) 205, 247, 253, 259, 459, 703
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 5 cut(s) 708, 949, 1026, 1113, 1159
XceI RCATGY 3 cut(s) 673, 1092, 1256
XcmI CCANNNNNNNNNTGG 1 cut(s) 1007
XmaJI CCTAGG 1 cut(s) 428
XspI CTAG 1 cut(s) 429
ZrmI AGTACT 1 cut(s) 1183
Zsp2I ATGCAT 2 cut(s) 283, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.