Rh2CG327600

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010750
Physical Location & Seq
Reverse (-)
42661476 .. 42666048
4573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG327600.1

Sequence Viewer

Length: 318 bp
ATGGAGGATGGCAAGGAGCCACGAGTGGAGCAGTCGGAAAAACCATCCGCAGAGGAGGAAGAGGTTTTAAAGAAAAAGTATGGTGGAATCATTCCGAAGAAACCACCACTGATTTCCAAGGACCATGAACGTGCTTACTTTGATTCTGCTGATTGGGCGCTTGGAAAGCAAGGTGTTGAGAAGCCTAAAGGACCACTTGAAGCCCTTCGGCCAAAATTACAGCCTACACAACAGCAAACAAGATACAGAAAGTCTCCTTGTGCTCCATCCGAGGGTGAAGATCAAAAAACCCTAGCAGAGGGCCGCTGCCGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

105

Amino Acids

11.85

Weight (kDa)

8.51

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 17 - 85 1.5e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 312
AciI CCGC 3 cut(s) 48, 304, 310
AcoI YGGCCR 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 272, 298
AgsI TTSAA 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 258
AoxI GGCC 2 cut(s) 209, 301
ApeKI GCWGC 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 121, 191, 301
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 121, 191
BauI CACGAG 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 293
BccI CCATC 3 cut(s) 2, 52, 274
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 3 cut(s) 304, 307, 310
BlsI GCNGC 3 cut(s) 305, 308, 311
Bme18I GGWCC 2 cut(s) 121, 191
BmgT120I GGNCC 3 cut(s) 121, 191, 301
BmiI GGNNCC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 117, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 298
BseDI CCNNGG 2 cut(s) 117, 270
BseGI GGATG 3 cut(s) 13, 44, 266
BseLI CCNNNNNNNGG 2 cut(s) 272, 298
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 2 cut(s) 211, 303
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 272, 298
BsmAI GTCTC 1 cut(s) 258
BsnI GGCC 2 cut(s) 211, 303
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 3 cut(s) 48, 304, 310
BspANI GGCC 2 cut(s) 211, 303
BspLI GGNNCC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 117, 270
BssMI GATC 1 cut(s) 280
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 315
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 13, 44, 266
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 3 cut(s) 155, 166, 309
BstV1I GCAGC 1 cut(s) 293
BsuRI GGCC 2 cut(s) 211, 303
BtsCI GGATG 3 cut(s) 13, 44, 266
BtsIMutI CAGTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 121, 191, 301
CviAII CATG 1 cut(s) 125
CviJI RGCY 6 cut(s) 19, 184, 203, 211, 223, 303
CviKI_1 RGCY 6 cut(s) 19, 184, 203, 211, 223, 303
DdeI CTNAG 1 cut(s) 315
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraI TTTAAA 1 cut(s) 69
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 121, 191
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 128
FaiI YATR 2 cut(s) 81, 126
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 304, 307, 310
FokI GGATG 3 cut(s) 20, 31, 253
Fsp4HI GCNGC 3 cut(s) 304, 307, 310
FspBI CTAG 1 cut(s) 293
GlaI GCGC 1 cut(s) 159
GluI GCNGC 3 cut(s) 304, 307, 310
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 2 cut(s) 211, 303
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 87, 143
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 37, 96, 271
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 166, 309
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 130
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 3 cut(s) 16, 28, 268
Lsp1109I GCAGC 1 cut(s) 293
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 130
MalI GATC 1 cut(s) 282
MbiI CCGCTC 1 cut(s) 312
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 71, 109, 290
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 5 cut(s) 46, 49, 55, 265, 292
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 155, 166, 309
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 87, 143
PkrI GCNGC 3 cut(s) 305, 308, 311
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 121, 191, 301
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 304, 307, 310
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 3 cut(s) 121, 191, 301
SduI GDGCHC 1 cut(s) 265
SetI ASST 3 cut(s) 66, 133, 175
SinI GGWCC 2 cut(s) 121, 191
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 1 cut(s) 215
SsiI CCGC 3 cut(s) 48, 304, 310
SspMI CTAG 1 cut(s) 293
StyI CCWWGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 133
TasI AATT 1 cut(s) 215
TauI GCSGC 2 cut(s) 306, 312
TfiI GAWTC 2 cut(s) 87, 143
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 114
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 141
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 121, 191
XagI CCTNNNNNAGG 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.