MD17G1267000.v1.1

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010750
Physical Location & Seq
Forward (+)
32727723 .. 32729656
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1267000.v1.1.491

Sequence Viewer

Length: 327 bp
ATGGAGGACGGGAAAGAGCAACGGGTGGATGAGGGGTCTGAAAAATCTTCCCCAGAGGAGGAGGAAGTTATAAAGAAAAAGTATGGTGGAATCATTCCAAAAAAACCACCACTAATTTCAAAGGACCATGAACGCGCTTATTTTGATTCTGCTGACTGGGCACTAGGAAAGCAAGGTGTTGAAAAGCCAAAAGGACCACTTGAAGCCCTTCGGCCAAAATTACAGCCCACACAGCAGCAAACACGATACAGAAAGTCTCCTTGTGCTCCAGCAGATGGTGAAGATGGAGGAAGTCCGGCTTCTGAGGATACAGCTGCCAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

109

Amino Acids

11.86

Weight (kDa)

5.16

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 16 - 86 7e-24 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 58, 275
AgsI TTSAA 3 cut(s) 120, 182, 203
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 235, 314
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 124, 194
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 124, 194
BaeGI GKGCMC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 247, 301
BccI CCATC 2 cut(s) 269, 278
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 2 cut(s) 236, 315
BlsI GCNGC 2 cut(s) 237, 316
Bme18I GGWCC 2 cut(s) 124, 194
BmgT120I GGNCC 2 cut(s) 124, 194
BmrI ACTGGG 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 275
Bse1I ACTGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 58, 275
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 2 cut(s) 71, 74
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 247, 301
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 58, 275
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 163, 268
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 135
BsrI ACTGG 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 158, 232
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 247, 301
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 34
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 124, 194
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 187, 206, 214, 226, 299, 314
CviKI_1 RGCY 6 cut(s) 187, 206, 214, 226, 299, 314
DdeI CTNAG 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 124, 194
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 71, 84, 129
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 283, 315
FatI CATG 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 236, 315
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 236, 315
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 236, 315
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 296
HhaI GCGC 1 cut(s) 137
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 90, 146
HpaII CCGG 1 cut(s) 296
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 40, 304
HpyAV CCTTC 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 232
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 66, 142, 282, 309
Lsp1109I GCAGC 2 cut(s) 247, 301
MaeI CTAG 1 cut(s) 164
MboII GAAGA 2 cut(s) 39, 293
MhlI GDGCHC 2 cut(s) 163, 268
MluCI AATT 2 cut(s) 114, 218
MnlI CCTC 6 cut(s) 25, 49, 52, 55, 281, 298
MroXI GAANNNNTTC 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 158, 232
NlaIII CATG 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 90, 146
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 237, 316
PsiI TTATAA 1 cut(s) 71
PspPI GGNCC 2 cut(s) 124, 194
PvuII CAGCTG 1 cut(s) 314
SatI GCNGC 2 cut(s) 236, 315
Sau96I GGNCC 2 cut(s) 124, 194
SduI GDGCHC 2 cut(s) 163, 268
SetI ASST 2 cut(s) 178, 316
SinI GGWCC 2 cut(s) 124, 194
Sse9I AATT 2 cut(s) 114, 218
SspMI CTAG 1 cut(s) 164
TasI AATT 2 cut(s) 114, 218
TfiI GAWTC 2 cut(s) 90, 146
TseI GCWGC 2 cut(s) 235, 314
TspDTI ATGAA 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 124, 194
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.