RLG00000019100

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010750
Physical Location & Seq
Reverse (-)
46401661 .. 46403833
2173 bp
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UTR
Exon/CDS
Intron
RLM00000019100

Sequence Viewer

Length: 495 bp
ATGTCCTCCCTCTTCCCATCGTCTTCAACAAACCCATTTAACCCTTATTCCCATTCCCTTCCATTTTTCTCTCGCCGAGATTTGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATCGCTTCTTCCAGCTAGCATTTCCTACGGTGCTGTGAGGACTTTAACTTTGGGAATGGAGGATGGCAAGGAGCCACAAGTGGAGCAGTCGGAAAAACCATCCGCAGAGGAGGAAGAGGTTTTAAAGAAAAAGTATGGTGGAATCATTCCGAAGAAACCACCACTGATTTCTAAGGACCATGAACGTGCTTACTTTGATTCAGCTGATTGGGCGCTTGGAAAGCAAGGTGTTGAGAAGCCTAAAGGACCACTTGAAGCCCTTCGGCCAAAATTACAGCCTACACAACAGCAAACAAGATACAGAAAGTCTCCTTGTGCTCCATCCGAGGGTGAAGATGGAGGAGGTGCTCCCTCTGAGGACACAGCTGCAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

165

Amino Acids

17.91

Weight (kDa)

6.18

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 74 - 142 5.1e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 2 cut(s) 27, 371
AluBI AGCT 3 cut(s) 131, 320, 482
AluI AGCT 3 cut(s) 131, 320, 482
Alw21I GWGCWC 2 cut(s) 436, 466
Alw26I GTCTC 1 cut(s) 429
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 482
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
Asp700I GAANNNNTTC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 292, 362
AsuHPI GGTGA 1 cut(s) 458
AsuNHI GCTAGC 1 cut(s) 131
AvaII GGWCC 2 cut(s) 292, 362
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 436, 466
BbvI GCAGC 1 cut(s) 469
BccI CCATC 5 cut(s) 25, 173, 223, 445, 446
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 2 cut(s) 114, 132
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
Bme18I GGWCC 2 cut(s) 292, 362
BmgT120I GGNCC 2 cut(s) 292, 362
BmiI GGNNCC 1 cut(s) 189
BmtI GCTAGC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 3 cut(s) 184, 215, 437
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 462
BseRI GAGGAG 2 cut(s) 239, 471
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 436, 466
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 429
BsnI GGCC 1 cut(s) 382
Bsp1286I GDGCHC 2 cut(s) 436, 466
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 189
BspOI GCTAGC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 17, 225
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 288, 471
BstF5I GGATG 3 cut(s) 184, 215, 437
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 326, 337
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 184, 215, 437
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 292, 362
CviAII CATG 1 cut(s) 296
CviJI RGCY 8 cut(s) 131, 190, 320, 355, 374, 382, 394, 482
CviKI_1 RGCY 8 cut(s) 131, 190, 320, 355, 374, 382, 394, 482
DdeI CTNAG 2 cut(s) 288, 471
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
DraI TTTAAA 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 17, 225
EarI CTCTTC 2 cut(s) 17, 225
Eco47I GGWCC 2 cut(s) 292, 362
FaeI CATG 1 cut(s) 299
FaiI YATR 2 cut(s) 252, 297
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 3 cut(s) 191, 202, 424
Fsp4HI GCNGC 1 cut(s) 483
FspBI CTAG 2 cut(s) 114, 132
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 1 cut(s) 382
HhaI GCGC 1 cut(s) 331
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 2 cut(s) 258, 314
HphI GGTGA 1 cut(s) 458
Hpy188I TCNGA 4 cut(s) 208, 267, 442, 472
Hpy188III TCNNGA 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 68, 386
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 337
HpyF3I CTNAG 2 cut(s) 288, 471
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 4 cut(s) 187, 199, 439, 469
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 469
MaeI CTAG 2 cut(s) 114, 132
MaeII ACGT 1 cut(s) 301
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 6 cut(s) 4, 15, 116, 242, 280, 461
MhlI GDGCHC 2 cut(s) 436, 466
MluCI AATT 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 3 cut(s) 39, 161, 239
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 320, 482
MwoI GCNNNNNNNGC 2 cut(s) 326, 337
NdeII GATC 1 cut(s) 116
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 258, 314
PkrI GCNGC 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 292, 362
PvuII CAGCTG 2 cut(s) 320, 482
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 3 cut(s) 39, 161, 239
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 292, 362
SduI GDGCHC 2 cut(s) 436, 466
SetI ASST 7 cut(s) 133, 237, 304, 322, 346, 463, 484
SinI GGWCC 2 cut(s) 292, 362
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 1 cut(s) 386
SsiI CCGC 1 cut(s) 219
SspMI CTAG 2 cut(s) 114, 132
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 304
TasI AATT 1 cut(s) 386
TfiI GAWTC 2 cut(s) 258, 314
Tru1I TTAA 3 cut(s) 39, 161, 239
Tru9I TTAA 3 cut(s) 39, 161, 239
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 482
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 292, 362
XbaI TCTAGA 1 cut(s) 113
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 2 cut(s) 114, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.