MD09G1236900.v1.1

Belongs to the endosulfine family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010750
Physical Location & Seq
Forward (+)
29937593 .. 29943833
6241 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1236900.v1.1.491

Sequence Viewer

Length: 327 bp
ATGGAGGACGGCAAAGAGCAACGGGTGGATGAGGGGTCTGAAAATTCTTCCCCACAGGAGGAGGAAGTTTTAAAGAAAAAGTATGGTGGAATCATTCCAAAAAAACCACCACTAATTTCGAAGGACCACGAACGTGCTTATTTTGATTCTGCTGATTGGGCACTTGGAAAGCAAGGGGTTGAGAAGCCAAAAGGACCACTTGAAGCCCTTCGGCCAAAACTACAGCCCACGCAGCAGCAAACACGATACAGAAAGTCTCCTTGTGCTCCAGCAGATGGTGAAGATGGAGGAAGTCCGGCTTCTGAGGATACAGTTGCGACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Endosulfine

Protein Analysis

109

Amino Acids

11.86

Weight (kDa)

5.13

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Endosulfine PF04667 16 - 86 1e-23 cAMP-regulated phosphoprotein/endosulfine conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010750)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64130
fragaria_vesca FvH4_6g27410
malus_domestica MD09G1236900.v1.1 MD17G1267000.v1.1
prunus_persica Prupe.3G117800_v2.0.a1 Prupe.3G117800_v2.0.a1
pyrus_communis pycom09g15550 pycom17g26610
rosa_chinensis RchiOBHm_Chr2g0128381 RchiOBHm_Chr2g0129711
rosa_laevigata RLG00000019100
rosa_multiflora Rmu_sc0001433.1_g000039
rosa_roxburghii Rroxscaffold_2G00114340
rosa_rugosa Rorug02G0289100 Rorug02G0289200
rosa_samantha Rh2AG340000 Rh2BG348600 Rh2CG327600 Rh2DG366900
rosa_wichuraiana Rw2G027820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 58, 275
AgsI TTSAA 1 cut(s) 203
AleI CACNNNNGTG 1 cut(s) 132
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 232, 235
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 2 cut(s) 124, 194
AsuHPI GGTGA 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 124, 194
BaeGI GKGCMC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 244, 247
BccI CCATC 2 cut(s) 269, 278
BceAI ACGGC 1 cut(s) 25
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 2 cut(s) 233, 236
BlsI GCNGC 2 cut(s) 234, 237
Bme18I GGWCC 2 cut(s) 124, 194
BmgT120I GGNCC 2 cut(s) 124, 194
BpmI CTGGAG 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 275
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 2 cut(s) 58, 275
BseMII CTCAG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 244, 247
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 58, 275
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 163, 268
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 158, 232
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 244, 247
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 124, 194
CviJI RGCY 5 cut(s) 187, 206, 214, 226, 299
CviKI_1 RGCY 5 cut(s) 187, 206, 214, 226, 299
DdeI CTNAG 1 cut(s) 303
DraI TTTAAA 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 124, 194
FaiI YATR 1 cut(s) 84
FalI AAGNNNNNCTT 4 cut(s) 183, 215, 283, 315
Fnu4HI GCNGC 2 cut(s) 233, 236
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 233, 236
GluI GCNGC 2 cut(s) 233, 236
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 296
HinfI GANTC 2 cut(s) 90, 146
HpaII CCGG 1 cut(s) 296
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 40, 304
HpyAV CCTTC 2 cut(s) 115, 218
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 232
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 133
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 3 cut(s) 41, 282, 309
Lsp1109I GCAGC 2 cut(s) 244, 247
MaeII ACGT 1 cut(s) 133
MboII GAAGA 2 cut(s) 39, 293
MhlI GDGCHC 2 cut(s) 163, 268
MluCI AATT 2 cut(s) 43, 114
MnlI CCTC 5 cut(s) 25, 52, 55, 281, 298
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 158, 232
NspV TTCGAA 1 cut(s) 119
OliI CACNNNNGTG 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 90, 146
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 234, 237
PspPI GGNCC 2 cut(s) 124, 194
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 2 cut(s) 233, 236
Sau96I GGNCC 2 cut(s) 124, 194
SduI GDGCHC 2 cut(s) 163, 268
SetI ASST 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 119
SinI GGWCC 2 cut(s) 124, 194
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 43, 114
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 136
TaqI TCGA 1 cut(s) 119
TasI AATT 2 cut(s) 43, 114
TfiI GAWTC 2 cut(s) 90, 146
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseI GCWGC 2 cut(s) 232, 235
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 124, 194
XapI RAATTY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.